Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimG and fimF are separated by 12 nucleotides fimF and fimD are separated by 9 nucleotides fimD and fimC are separated by 66 nucleotides fimC and fimI are separated by 36 nucleotides
HEPCGN_09595: fimG - type 1 fimbria minor subunit FimG, at 659,036 to 659,539
fimG
HEPCGN_09600: fimF - type 1 fimbria minor subunit FimF, at 659,552 to 660,082
fimF
HEPCGN_09605: fimD - fimbrial usher FimD, at 660,092 to 662,728
fimD
HEPCGN_09610: fimC - type 1 fimbria chaperone FimC, at 662,795 to 663,520
fimC
HEPCGN_09615: fimI - Fimbrin-like protein fimI precursor, at 663,557 to 664,054
fimI
Position (kb) 660
661
662
663 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 659.180 kb on - strand, within fimG at 659.247 kb on + strand, within fimG at 659.248 kb on - strand, within fimG at 659.514 kb on - strand at 659.514 kb on - strand at 659.553 kb on + strand at 659.576 kb on - strand at 659.590 kb on + strand at 659.590 kb on + strand at 659.591 kb on - strand at 659.591 kb on - strand at 659.738 kb on + strand, within fimF at 659.968 kb on + strand, within fimF at 659.988 kb on + strand, within fimF at 659.988 kb on + strand, within fimF at 660.001 kb on + strand, within fimF at 660.002 kb on - strand, within fimF at 660.002 kb on - strand, within fimF at 660.122 kb on + strand at 660.123 kb on - strand at 660.123 kb on - strand at 660.154 kb on - strand at 660.232 kb on - strand at 660.311 kb on - strand at 660.311 kb on - strand at 660.313 kb on + strand at 660.313 kb on + strand at 660.342 kb on - strand at 660.439 kb on + strand, within fimD at 660.483 kb on + strand, within fimD at 660.484 kb on - strand, within fimD at 660.646 kb on - strand, within fimD at 660.659 kb on - strand, within fimD at 660.659 kb on - strand, within fimD at 660.679 kb on - strand, within fimD at 660.686 kb on - strand, within fimD at 660.781 kb on + strand, within fimD at 660.782 kb on - strand, within fimD at 660.784 kb on - strand, within fimD at 660.811 kb on + strand, within fimD at 660.816 kb on + strand, within fimD at 660.991 kb on + strand, within fimD at 660.993 kb on + strand, within fimD at 661.012 kb on + strand, within fimD at 661.061 kb on - strand, within fimD at 661.142 kb on + strand, within fimD at 661.159 kb on + strand, within fimD at 661.161 kb on + strand, within fimD at 661.173 kb on + strand, within fimD at 661.230 kb on + strand, within fimD at 661.248 kb on + strand, within fimD at 661.249 kb on - strand, within fimD at 661.409 kb on - strand, within fimD at 661.498 kb on - strand, within fimD at 661.530 kb on - strand, within fimD at 661.708 kb on + strand, within fimD at 661.712 kb on - strand, within fimD at 661.726 kb on + strand, within fimD at 661.738 kb on + strand, within fimD at 661.762 kb on + strand, within fimD at 661.766 kb on - strand, within fimD at 661.766 kb on - strand, within fimD at 661.767 kb on + strand, within fimD at 661.968 kb on - strand, within fimD at 662.038 kb on + strand, within fimD at 662.041 kb on - strand, within fimD at 662.113 kb on - strand, within fimD at 662.212 kb on + strand, within fimD at 662.212 kb on + strand, within fimD at 662.293 kb on + strand, within fimD at 662.350 kb on + strand, within fimD at 662.369 kb on - strand, within fimD at 662.465 kb on - strand at 662.467 kb on - strand at 662.496 kb on + strand at 662.887 kb on + strand, within fimC at 662.887 kb on + strand, within fimC at 662.970 kb on + strand, within fimC at 663.070 kb on - strand, within fimC at 663.131 kb on - strand, within fimC at 663.284 kb on + strand, within fimC at 663.340 kb on + strand, within fimC at 663.544 kb on - strand at 663.564 kb on + strand at 663.565 kb on - strand at 663.565 kb on - strand at 663.569 kb on + strand at 663.705 kb on - strand, within fimI
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 659,180 - fimG HEPCGN_09595 0.29 -0.7 659,247 + fimG HEPCGN_09595 0.42 +0.2 659,248 - fimG HEPCGN_09595 0.42 +0.1 659,514 - -2.9 659,514 - +0.4 659,553 + -0.0 659,576 - -0.0 659,590 + -0.4 659,590 + +0.5 659,591 - -0.2 659,591 - +0.1 659,738 + fimF HEPCGN_09600 0.35 +0.4 659,968 + fimF HEPCGN_09600 0.78 +2.2 659,988 + fimF HEPCGN_09600 0.82 -0.8 659,988 + fimF HEPCGN_09600 0.82 +1.5 660,001 + fimF HEPCGN_09600 0.85 +0.5 660,002 - fimF HEPCGN_09600 0.85 -0.9 660,002 - fimF HEPCGN_09600 0.85 -1.8 660,122 + +0.8 660,123 - +0.4 660,123 - -1.0 660,154 - -0.6 660,232 - -0.0 660,311 - -0.8 660,311 - +0.3 660,313 + +1.1 660,313 + +0.9 660,342 - -1.6 660,439 + fimD HEPCGN_09605 0.13 -0.5 660,483 + fimD HEPCGN_09605 0.15 +0.1 660,484 - fimD HEPCGN_09605 0.15 +0.0 660,646 - fimD HEPCGN_09605 0.21 +1.4 660,659 - fimD HEPCGN_09605 0.22 +0.7 660,659 - fimD HEPCGN_09605 0.22 +0.2 660,679 - fimD HEPCGN_09605 0.22 +1.3 660,686 - fimD HEPCGN_09605 0.23 -0.1 660,781 + fimD HEPCGN_09605 0.26 -0.3 660,782 - fimD HEPCGN_09605 0.26 -1.4 660,784 - fimD HEPCGN_09605 0.26 -0.5 660,811 + fimD HEPCGN_09605 0.27 -0.2 660,816 + fimD HEPCGN_09605 0.27 -0.0 660,991 + fimD HEPCGN_09605 0.34 -1.4 660,993 + fimD HEPCGN_09605 0.34 +0.1 661,012 + fimD HEPCGN_09605 0.35 -0.0 661,061 - fimD HEPCGN_09605 0.37 +0.1 661,142 + fimD HEPCGN_09605 0.40 +0.4 661,159 + fimD HEPCGN_09605 0.40 +0.4 661,161 + fimD HEPCGN_09605 0.41 -0.5 661,173 + fimD HEPCGN_09605 0.41 +1.5 661,230 + fimD HEPCGN_09605 0.43 -0.5 661,248 + fimD HEPCGN_09605 0.44 -0.3 661,249 - fimD HEPCGN_09605 0.44 -0.3 661,409 - fimD HEPCGN_09605 0.50 +0.5 661,498 - fimD HEPCGN_09605 0.53 +0.7 661,530 - fimD HEPCGN_09605 0.55 -0.2 661,708 + fimD HEPCGN_09605 0.61 -1.2 661,712 - fimD HEPCGN_09605 0.61 +0.5 661,726 + fimD HEPCGN_09605 0.62 +0.4 661,738 + fimD HEPCGN_09605 0.62 +0.4 661,762 + fimD HEPCGN_09605 0.63 -0.4 661,766 - fimD HEPCGN_09605 0.63 +0.5 661,766 - fimD HEPCGN_09605 0.63 -0.9 661,767 + fimD HEPCGN_09605 0.64 +0.0 661,968 - fimD HEPCGN_09605 0.71 +0.3 662,038 + fimD HEPCGN_09605 0.74 +0.5 662,041 - fimD HEPCGN_09605 0.74 -0.5 662,113 - fimD HEPCGN_09605 0.77 -0.4 662,212 + fimD HEPCGN_09605 0.80 -0.3 662,212 + fimD HEPCGN_09605 0.80 +0.8 662,293 + fimD HEPCGN_09605 0.83 -1.3 662,350 + fimD HEPCGN_09605 0.86 -0.7 662,369 - fimD HEPCGN_09605 0.86 +0.1 662,465 - +0.3 662,467 - -2.0 662,496 + +0.2 662,887 + fimC HEPCGN_09610 0.13 -1.7 662,887 + fimC HEPCGN_09610 0.13 -1.1 662,970 + fimC HEPCGN_09610 0.24 -0.2 663,070 - fimC HEPCGN_09610 0.38 -0.2 663,131 - fimC HEPCGN_09610 0.46 -1.6 663,284 + fimC HEPCGN_09610 0.67 +0.5 663,340 + fimC HEPCGN_09610 0.75 +0.1 663,544 - +0.5 663,564 + -0.5 663,565 - +0.4 663,565 - +0.5 663,569 + -1.0 663,705 - fimI HEPCGN_09615 0.30 +0.5
Or see this region's nucleotide sequence