Strain Fitness in Escherichia coli ECOR38 around HEPCGN_09025

Experiment: Control_ECOR38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_09020 and HEPCGN_09025 are separated by 129 nucleotidesHEPCGN_09025 and HEPCGN_09030 are separated by 19 nucleotides HEPCGN_09020: HEPCGN_09020 - cytoplasmic protein, at 551,486 to 552,730 _09020 HEPCGN_09025: HEPCGN_09025 - arylsulfatase, at 552,860 to 554,353 _09025 HEPCGN_09030: HEPCGN_09030 - Nucleoside-specific channel-forming protein, Tsx, at 554,373 to 555,134 _09030 Position (kb) 552 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 551.887 kb on + strand, within HEPCGN_09020at 551.892 kb on + strand, within HEPCGN_09020at 551.979 kb on - strand, within HEPCGN_09020at 552.029 kb on - strand, within HEPCGN_09020at 552.087 kb on + strand, within HEPCGN_09020at 552.106 kb on - strand, within HEPCGN_09020at 552.199 kb on + strand, within HEPCGN_09020at 552.200 kb on - strand, within HEPCGN_09020at 552.281 kb on - strand, within HEPCGN_09020at 552.283 kb on - strand, within HEPCGN_09020at 552.419 kb on + strand, within HEPCGN_09020at 552.463 kb on - strand, within HEPCGN_09020at 552.716 kb on + strandat 552.767 kb on - strandat 552.886 kb on + strandat 552.931 kb on + strandat 552.934 kb on - strandat 552.951 kb on + strandat 552.952 kb on - strandat 552.983 kb on + strandat 553.023 kb on + strand, within HEPCGN_09025at 553.023 kb on + strand, within HEPCGN_09025at 553.023 kb on + strand, within HEPCGN_09025at 553.024 kb on - strand, within HEPCGN_09025at 553.025 kb on + strand, within HEPCGN_09025at 553.029 kb on + strand, within HEPCGN_09025at 553.029 kb on + strand, within HEPCGN_09025at 553.046 kb on - strand, within HEPCGN_09025at 553.241 kb on - strand, within HEPCGN_09025at 553.241 kb on - strand, within HEPCGN_09025at 553.310 kb on - strand, within HEPCGN_09025at 553.364 kb on + strand, within HEPCGN_09025at 553.364 kb on + strand, within HEPCGN_09025at 553.487 kb on - strand, within HEPCGN_09025at 553.487 kb on - strand, within HEPCGN_09025at 553.494 kb on - strand, within HEPCGN_09025at 553.536 kb on + strand, within HEPCGN_09025at 553.537 kb on - strand, within HEPCGN_09025at 553.537 kb on - strand, within HEPCGN_09025at 553.547 kb on - strand, within HEPCGN_09025at 553.583 kb on + strand, within HEPCGN_09025at 553.618 kb on - strand, within HEPCGN_09025at 553.618 kb on - strand, within HEPCGN_09025at 553.626 kb on + strand, within HEPCGN_09025at 553.626 kb on + strand, within HEPCGN_09025at 553.627 kb on - strand, within HEPCGN_09025at 553.675 kb on + strand, within HEPCGN_09025at 553.750 kb on - strand, within HEPCGN_09025at 553.855 kb on + strand, within HEPCGN_09025at 553.883 kb on - strand, within HEPCGN_09025at 553.893 kb on + strand, within HEPCGN_09025at 553.893 kb on + strand, within HEPCGN_09025at 553.907 kb on - strand, within HEPCGN_09025at 553.998 kb on - strand, within HEPCGN_09025at 553.998 kb on - strand, within HEPCGN_09025at 554.096 kb on + strand, within HEPCGN_09025at 554.136 kb on + strand, within HEPCGN_09025at 554.137 kb on - strand, within HEPCGN_09025at 554.208 kb on + strandat 554.208 kb on + strandat 554.209 kb on - strandat 554.231 kb on + strandat 554.394 kb on - strandat 554.395 kb on + strandat 554.539 kb on + strand, within HEPCGN_09030at 554.607 kb on - strand, within HEPCGN_09030at 554.617 kb on - strand, within HEPCGN_09030at 554.665 kb on + strand, within HEPCGN_09030at 554.680 kb on + strand, within HEPCGN_09030at 554.696 kb on + strand, within HEPCGN_09030at 554.700 kb on + strand, within HEPCGN_09030at 554.701 kb on - strand, within HEPCGN_09030at 554.711 kb on - strand, within HEPCGN_09030at 554.718 kb on - strand, within HEPCGN_09030at 554.828 kb on + strand, within HEPCGN_09030at 554.829 kb on - strand, within HEPCGN_09030at 554.829 kb on - strand, within HEPCGN_09030at 555.052 kb on + strand, within HEPCGN_09030at 555.136 kb on + strandat 555.137 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR38
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551,887 + HEPCGN_09020 0.32 +0.4
551,892 + HEPCGN_09020 0.33 +0.4
551,979 - HEPCGN_09020 0.40 +2.4
552,029 - HEPCGN_09020 0.44 +0.8
552,087 + HEPCGN_09020 0.48 -0.3
552,106 - HEPCGN_09020 0.50 +0.2
552,199 + HEPCGN_09020 0.57 +0.4
552,200 - HEPCGN_09020 0.57 -0.1
552,281 - HEPCGN_09020 0.64 -0.4
552,283 - HEPCGN_09020 0.64 +0.1
552,419 + HEPCGN_09020 0.75 +0.8
552,463 - HEPCGN_09020 0.78 -0.8
552,716 + +0.1
552,767 - -0.1
552,886 + -0.0
552,931 + +0.5
552,934 - -0.7
552,951 + -0.5
552,952 - -0.3
552,983 + -0.5
553,023 + HEPCGN_09025 0.11 +0.6
553,023 + HEPCGN_09025 0.11 -0.2
553,023 + HEPCGN_09025 0.11 +0.5
553,024 - HEPCGN_09025 0.11 +1.2
553,025 + HEPCGN_09025 0.11 -0.0
553,029 + HEPCGN_09025 0.11 -1.0
553,029 + HEPCGN_09025 0.11 +0.0
553,046 - HEPCGN_09025 0.12 +0.1
553,241 - HEPCGN_09025 0.26 -0.4
553,241 - HEPCGN_09025 0.26 +0.2
553,310 - HEPCGN_09025 0.30 +0.8
553,364 + HEPCGN_09025 0.34 +0.2
553,364 + HEPCGN_09025 0.34 -0.5
553,487 - HEPCGN_09025 0.42 -2.9
553,487 - HEPCGN_09025 0.42 +0.2
553,494 - HEPCGN_09025 0.42 +0.8
553,536 + HEPCGN_09025 0.45 +0.1
553,537 - HEPCGN_09025 0.45 -0.2
553,537 - HEPCGN_09025 0.45 +0.6
553,547 - HEPCGN_09025 0.46 -0.5
553,583 + HEPCGN_09025 0.48 +0.3
553,618 - HEPCGN_09025 0.51 -0.1
553,618 - HEPCGN_09025 0.51 -0.5
553,626 + HEPCGN_09025 0.51 +0.1
553,626 + HEPCGN_09025 0.51 -1.8
553,627 - HEPCGN_09025 0.51 +1.1
553,675 + HEPCGN_09025 0.55 -0.1
553,750 - HEPCGN_09025 0.60 -2.5
553,855 + HEPCGN_09025 0.67 +1.5
553,883 - HEPCGN_09025 0.68 -0.3
553,893 + HEPCGN_09025 0.69 -0.5
553,893 + HEPCGN_09025 0.69 +0.4
553,907 - HEPCGN_09025 0.70 -0.9
553,998 - HEPCGN_09025 0.76 +0.1
553,998 - HEPCGN_09025 0.76 +0.3
554,096 + HEPCGN_09025 0.83 -0.4
554,136 + HEPCGN_09025 0.85 -1.4
554,137 - HEPCGN_09025 0.85 +0.6
554,208 + +0.3
554,208 + +0.3
554,209 - -1.0
554,231 + -0.5
554,394 - -1.3
554,395 + -1.8
554,539 + HEPCGN_09030 0.22 -2.0
554,607 - HEPCGN_09030 0.31 +0.4
554,617 - HEPCGN_09030 0.32 -1.2
554,665 + HEPCGN_09030 0.38 -0.0
554,680 + HEPCGN_09030 0.40 +0.8
554,696 + HEPCGN_09030 0.42 -0.5
554,700 + HEPCGN_09030 0.43 -0.6
554,701 - HEPCGN_09030 0.43 +0.3
554,711 - HEPCGN_09030 0.44 +0.3
554,718 - HEPCGN_09030 0.45 -0.3
554,828 + HEPCGN_09030 0.60 -0.5
554,829 - HEPCGN_09030 0.60 +0.9
554,829 - HEPCGN_09030 0.60 +1.1
555,052 + HEPCGN_09030 0.89 +0.7
555,136 + +0.4
555,137 - -0.4

Or see this region's nucleotide sequence