Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt brnQ and phoR are separated by 406 nucleotides phoR and phoB are separated by 57 nucleotides phoB and sbcD are separated by 189 nucleotides
HEPCGN_07175: brnQ - branched-chain amino acid transporter carrier protein BrnQ, at 168,344 to 169,663
brnQ
HEPCGN_07180: phoR - phosphate regulon sensor histidine kinase PhoR, at 170,070 to 171,365
phoR
HEPCGN_07185: phoB - phosphate response regulator transcription factor PhoB, at 171,423 to 172,112
phoB
HEPCGN_07190: sbcD - exonuclease subunit SbcD, at 172,302 to 173,504
sbcD
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1 at 169.145 kb on - strand, within brnQ at 169.162 kb on + strand, within brnQ at 169.290 kb on + strand, within brnQ at 169.294 kb on + strand, within brnQ at 169.295 kb on - strand, within brnQ at 169.360 kb on + strand, within brnQ at 169.396 kb on - strand, within brnQ at 169.396 kb on - strand, within brnQ at 169.415 kb on + strand, within brnQ at 169.513 kb on + strand, within brnQ at 169.582 kb on + strand at 169.618 kb on + strand at 169.650 kb on - strand at 169.728 kb on + strand at 169.739 kb on - strand at 169.739 kb on - strand at 169.822 kb on - strand at 169.822 kb on - strand at 169.893 kb on + strand at 169.893 kb on + strand at 169.894 kb on - strand at 169.896 kb on - strand at 169.923 kb on + strand at 169.986 kb on + strand at 169.993 kb on + strand at 170.138 kb on + strand at 170.138 kb on + strand at 170.139 kb on - strand at 170.310 kb on - strand, within phoR at 170.370 kb on - strand, within phoR at 170.387 kb on - strand, within phoR at 170.447 kb on + strand, within phoR at 170.652 kb on + strand, within phoR at 170.722 kb on - strand, within phoR at 170.820 kb on - strand, within phoR at 170.822 kb on - strand, within phoR at 170.871 kb on - strand, within phoR at 171.108 kb on - strand, within phoR at 171.182 kb on + strand, within phoR at 171.182 kb on + strand, within phoR at 171.182 kb on + strand, within phoR at 171.216 kb on + strand, within phoR at 171.322 kb on - strand at 171.322 kb on - strand at 171.367 kb on + strand at 171.367 kb on + strand at 171.367 kb on + strand at 171.367 kb on + strand at 171.367 kb on + strand at 171.368 kb on - strand at 171.368 kb on - strand at 171.372 kb on + strand at 171.381 kb on + strand at 171.382 kb on - strand at 171.382 kb on - strand at 171.503 kb on + strand, within phoB at 171.547 kb on + strand, within phoB at 171.548 kb on - strand, within phoB at 171.574 kb on - strand, within phoB at 171.593 kb on - strand, within phoB at 171.703 kb on - strand, within phoB at 171.747 kb on - strand, within phoB at 171.747 kb on - strand, within phoB at 171.806 kb on + strand, within phoB at 171.808 kb on + strand, within phoB at 171.809 kb on - strand, within phoB at 171.966 kb on + strand, within phoB at 171.966 kb on + strand, within phoB at 171.967 kb on - strand, within phoB at 172.127 kb on + strand at 172.131 kb on - strand at 172.134 kb on + strand at 172.206 kb on + strand at 172.266 kb on - strand at 172.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 169,145 - brnQ HEPCGN_07175 0.61 +0.4 169,162 + brnQ HEPCGN_07175 0.62 +0.3 169,290 + brnQ HEPCGN_07175 0.72 +0.6 169,294 + brnQ HEPCGN_07175 0.72 +0.6 169,295 - brnQ HEPCGN_07175 0.72 -1.3 169,360 + brnQ HEPCGN_07175 0.77 -0.1 169,396 - brnQ HEPCGN_07175 0.80 -1.2 169,396 - brnQ HEPCGN_07175 0.80 -0.0 169,415 + brnQ HEPCGN_07175 0.81 -0.8 169,513 + brnQ HEPCGN_07175 0.89 +1.0 169,582 + -0.2 169,618 + +0.6 169,650 - +0.2 169,728 + +0.9 169,739 - -0.1 169,739 - +1.6 169,822 - +0.2 169,822 - -0.5 169,893 + +0.4 169,893 + -1.1 169,894 - -1.1 169,896 - -0.5 169,923 + -0.4 169,986 + -0.7 169,993 + -0.4 170,138 + +0.2 170,138 + -0.3 170,139 - -0.1 170,310 - phoR HEPCGN_07180 0.19 +0.7 170,370 - phoR HEPCGN_07180 0.23 +0.3 170,387 - phoR HEPCGN_07180 0.24 +0.2 170,447 + phoR HEPCGN_07180 0.29 +0.3 170,652 + phoR HEPCGN_07180 0.45 +0.4 170,722 - phoR HEPCGN_07180 0.50 -0.9 170,820 - phoR HEPCGN_07180 0.58 +0.0 170,822 - phoR HEPCGN_07180 0.58 +0.3 170,871 - phoR HEPCGN_07180 0.62 -0.3 171,108 - phoR HEPCGN_07180 0.80 -0.3 171,182 + phoR HEPCGN_07180 0.86 -0.5 171,182 + phoR HEPCGN_07180 0.86 +1.1 171,182 + phoR HEPCGN_07180 0.86 -0.6 171,216 + phoR HEPCGN_07180 0.88 +0.2 171,322 - -0.8 171,322 - -0.0 171,367 + -1.4 171,367 + -0.3 171,367 + -0.1 171,367 + -0.3 171,367 + -0.3 171,368 - +0.7 171,368 - +0.0 171,372 + +0.0 171,381 + +1.1 171,382 - +0.3 171,382 - -0.2 171,503 + phoB HEPCGN_07185 0.12 +0.2 171,547 + phoB HEPCGN_07185 0.18 +0.5 171,548 - phoB HEPCGN_07185 0.18 +0.3 171,574 - phoB HEPCGN_07185 0.22 -0.3 171,593 - phoB HEPCGN_07185 0.25 +0.0 171,703 - phoB HEPCGN_07185 0.41 +0.3 171,747 - phoB HEPCGN_07185 0.47 +0.7 171,747 - phoB HEPCGN_07185 0.47 +0.4 171,806 + phoB HEPCGN_07185 0.56 +0.0 171,808 + phoB HEPCGN_07185 0.56 +0.3 171,809 - phoB HEPCGN_07185 0.56 +0.3 171,966 + phoB HEPCGN_07185 0.79 +0.8 171,966 + phoB HEPCGN_07185 0.79 -0.3 171,967 - phoB HEPCGN_07185 0.79 -1.8 172,127 + +0.6 172,131 - -0.1 172,134 + +0.2 172,206 + +0.3 172,266 - -0.1 172,302 - +0.0
Or see this region's nucleotide sequence