Strain Fitness in Escherichia coli ECOR38 around HEPCGN_06755

Experiment: Control_ECOR38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaes and hemH overlap by 4 nucleotideshemH and adk are separated by 131 nucleotidesadk and htpG are separated by 218 nucleotides HEPCGN_06750: aes - acetyl esterase, at 83,323 to 84,282 aes HEPCGN_06755: hemH - ferrochelatase, at 84,279 to 85,241 hemH HEPCGN_06760: adk - adenylate kinase, at 85,373 to 86,017 adk HEPCGN_06765: htpG - molecular chaperone HtpG, at 86,236 to 88,110 htpG Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1at 83.292 kb on + strandat 83.293 kb on - strandat 83.359 kb on - strandat 83.450 kb on - strand, within aesat 83.450 kb on - strand, within aesat 83.452 kb on + strand, within aesat 83.452 kb on + strand, within aesat 83.509 kb on + strand, within aesat 83.509 kb on + strand, within aesat 83.510 kb on - strand, within aesat 83.510 kb on - strand, within aesat 83.510 kb on - strand, within aesat 83.588 kb on - strand, within aesat 83.660 kb on - strand, within aesat 83.670 kb on + strand, within aesat 83.671 kb on - strand, within aesat 83.671 kb on - strand, within aesat 83.690 kb on - strand, within aesat 83.690 kb on - strand, within aesat 83.752 kb on + strand, within aesat 83.787 kb on + strand, within aesat 83.992 kb on + strand, within aesat 83.993 kb on - strand, within aesat 83.993 kb on - strand, within aesat 84.004 kb on + strand, within aesat 84.005 kb on - strand, within aesat 84.005 kb on - strand, within aesat 84.005 kb on - strand, within aesat 84.008 kb on + strand, within aesat 84.008 kb on + strand, within aesat 84.052 kb on - strand, within aesat 84.088 kb on - strand, within aesat 84.302 kb on + strandat 85.303 kb on - strandat 86.130 kb on + strandat 86.232 kb on + strandat 86.232 kb on + strandat 86.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR38
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83,292 + -2.7
83,293 - -0.0
83,359 - +0.6
83,450 - aes HEPCGN_06750 0.13 +0.5
83,450 - aes HEPCGN_06750 0.13 +0.3
83,452 + aes HEPCGN_06750 0.13 +0.6
83,452 + aes HEPCGN_06750 0.13 +0.5
83,509 + aes HEPCGN_06750 0.19 +0.3
83,509 + aes HEPCGN_06750 0.19 +0.0
83,510 - aes HEPCGN_06750 0.19 +0.4
83,510 - aes HEPCGN_06750 0.19 -0.1
83,510 - aes HEPCGN_06750 0.19 +0.4
83,588 - aes HEPCGN_06750 0.28 +1.1
83,660 - aes HEPCGN_06750 0.35 +0.5
83,670 + aes HEPCGN_06750 0.36 -0.1
83,671 - aes HEPCGN_06750 0.36 +0.5
83,671 - aes HEPCGN_06750 0.36 -0.1
83,690 - aes HEPCGN_06750 0.38 +1.3
83,690 - aes HEPCGN_06750 0.38 -0.1
83,752 + aes HEPCGN_06750 0.45 -0.2
83,787 + aes HEPCGN_06750 0.48 +1.1
83,992 + aes HEPCGN_06750 0.70 +0.2
83,993 - aes HEPCGN_06750 0.70 -0.2
83,993 - aes HEPCGN_06750 0.70 +1.6
84,004 + aes HEPCGN_06750 0.71 +1.4
84,005 - aes HEPCGN_06750 0.71 +0.9
84,005 - aes HEPCGN_06750 0.71 +0.2
84,005 - aes HEPCGN_06750 0.71 +0.3
84,008 + aes HEPCGN_06750 0.71 -1.1
84,008 + aes HEPCGN_06750 0.71 +0.6
84,052 - aes HEPCGN_06750 0.76 +0.3
84,088 - aes HEPCGN_06750 0.80 +0.2
84,302 + -0.4
85,303 - -1.3
86,130 + +0.5
86,232 + -0.3
86,232 + -2.1
86,233 - +0.1

Or see this region's nucleotide sequence