Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS600 and HEPCGN_06310 are separated by 130 nucleotides HEPCGN_06310 and istB are separated by 43 nucleotides istB and istA overlap by 1 nucleotides
HEPCGN_06305: tnp-IS600 - IS3 family IS600 transposase, at 1,128,154 to 1,128,972
tnp-IS600
HEPCGN_06310: HEPCGN_06310 - antitermination protein, at 1,129,103 to 1,129,531
_06310
HEPCGN_06315: istB - IS21-like element IS100kyp family helper ATPase IstB, at 1,129,575 to 1,130,354
istB
HEPCGN_06320: istA - IS21-like element IS100 family transposase, at 1,130,354 to 1,131,376
istA
Position (kb) 1129
1130
1131 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1129.026 kb on - strand at 1129.087 kb on - strand at 1129.093 kb on + strand at 1129.206 kb on + strand, within HEPCGN_06310 at 1129.307 kb on + strand, within HEPCGN_06310 at 1129.327 kb on + strand, within HEPCGN_06310 at 1129.364 kb on + strand, within HEPCGN_06310 at 1129.365 kb on - strand, within HEPCGN_06310 at 1129.367 kb on - strand, within HEPCGN_06310 at 1129.367 kb on - strand, within HEPCGN_06310 at 1129.367 kb on - strand, within HEPCGN_06310 at 1129.371 kb on + strand, within HEPCGN_06310 at 1129.440 kb on + strand, within HEPCGN_06310 at 1129.492 kb on + strand at 1129.493 kb on - strand at 1129.539 kb on - strand at 1129.539 kb on - strand at 1130.291 kb on + strand at 1130.382 kb on + strand at 1130.826 kb on + strand, within istA at 1130.826 kb on + strand, within istA at 1130.827 kb on - strand, within istA at 1130.827 kb on - strand, within istA at 1130.869 kb on + strand, within istA at 1130.980 kb on + strand, within istA at 1130.980 kb on + strand, within istA at 1130.981 kb on - strand, within istA at 1130.986 kb on + strand, within istA at 1131.157 kb on - strand, within istA at 1131.189 kb on + strand, within istA at 1131.190 kb on - strand, within istA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 1,129,026 - -0.4 1,129,087 - +0.1 1,129,093 + +0.5 1,129,206 + HEPCGN_06310 0.24 -0.3 1,129,307 + HEPCGN_06310 0.48 -0.2 1,129,327 + HEPCGN_06310 0.52 -0.6 1,129,364 + HEPCGN_06310 0.61 +1.2 1,129,365 - HEPCGN_06310 0.61 -0.1 1,129,367 - HEPCGN_06310 0.62 -0.4 1,129,367 - HEPCGN_06310 0.62 -1.1 1,129,367 - HEPCGN_06310 0.62 -0.2 1,129,371 + HEPCGN_06310 0.62 -0.6 1,129,440 + HEPCGN_06310 0.79 -3.0 1,129,492 + +1.0 1,129,493 - +0.2 1,129,539 - +1.6 1,129,539 - +0.4 1,130,291 + -0.2 1,130,382 + +0.4 1,130,826 + istA HEPCGN_06320 0.46 +0.2 1,130,826 + istA HEPCGN_06320 0.46 -1.6 1,130,827 - istA HEPCGN_06320 0.46 -0.4 1,130,827 - istA HEPCGN_06320 0.46 -0.2 1,130,869 + istA HEPCGN_06320 0.50 -0.3 1,130,980 + istA HEPCGN_06320 0.61 -0.4 1,130,980 + istA HEPCGN_06320 0.61 +1.4 1,130,981 - istA HEPCGN_06320 0.61 +0.2 1,130,986 + istA HEPCGN_06320 0.62 +0.9 1,131,157 - istA HEPCGN_06320 0.78 +0.2 1,131,189 + istA HEPCGN_06320 0.82 -0.1 1,131,190 - istA HEPCGN_06320 0.82 -1.2
Or see this region's nucleotide sequence