Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03065

Experiment: Control_ECOR38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwcaI and manC are separated by 2 nucleotidesmanC and cpsG are separated by 101 nucleotides HEPCGN_03060: wcaI - colanic acid biosynthesis fucosyltransferase WcaI, at 520,091 to 521,314 wcaI HEPCGN_03065: manC - mannose-1-phosphate guanylyltransferase ManC, at 521,317 to 522,753 manC HEPCGN_03070: cpsG - colanic acid biosynthesis phosphomannomutase CpsG, at 522,855 to 524,225 cpsG Position (kb) 521 522 523Strain fitness (log2 ratio) -1 0 1at 520.594 kb on + strand, within wcaIat 520.648 kb on + strand, within wcaIat 520.649 kb on - strand, within wcaIat 520.797 kb on - strand, within wcaIat 520.807 kb on + strand, within wcaIat 520.837 kb on + strand, within wcaIat 521.050 kb on - strand, within wcaIat 521.249 kb on + strandat 521.295 kb on + strandat 521.302 kb on + strandat 521.303 kb on - strandat 521.316 kb on + strandat 521.317 kb on - strandat 521.563 kb on - strand, within manCat 521.632 kb on - strand, within manCat 521.651 kb on + strand, within manCat 521.652 kb on - strand, within manCat 521.652 kb on - strand, within manCat 521.728 kb on + strand, within manCat 521.729 kb on - strand, within manCat 521.795 kb on - strand, within manCat 521.797 kb on - strand, within manCat 521.893 kb on + strand, within manCat 521.894 kb on - strand, within manCat 521.953 kb on + strand, within manCat 521.953 kb on + strand, within manCat 522.250 kb on + strand, within manCat 522.250 kb on + strand, within manCat 522.251 kb on - strand, within manCat 522.251 kb on - strand, within manCat 522.251 kb on - strand, within manCat 522.251 kb on - strand, within manCat 522.251 kb on - strand, within manCat 522.251 kb on - strand, within manCat 522.251 kb on - strand, within manCat 522.251 kb on - strand, within manCat 522.257 kb on - strand, within manCat 522.425 kb on - strand, within manCat 522.442 kb on + strand, within manCat 522.516 kb on - strand, within manCat 522.620 kb on - strandat 522.700 kb on + strandat 522.700 kb on + strandat 522.701 kb on - strandat 522.751 kb on + strandat 522.752 kb on - strandat 522.752 kb on - strandat 522.754 kb on + strandat 522.775 kb on + strandat 522.854 kb on + strandat 522.882 kb on + strandat 523.139 kb on + strand, within cpsGat 523.340 kb on + strand, within cpsGat 523.340 kb on + strand, within cpsGat 523.359 kb on - strand, within cpsGat 523.464 kb on - strand, within cpsG

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR38
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520,594 + wcaI HEPCGN_03060 0.41 +0.1
520,648 + wcaI HEPCGN_03060 0.46 -0.2
520,649 - wcaI HEPCGN_03060 0.46 -0.1
520,797 - wcaI HEPCGN_03060 0.58 +0.5
520,807 + wcaI HEPCGN_03060 0.58 +0.5
520,837 + wcaI HEPCGN_03060 0.61 -0.0
521,050 - wcaI HEPCGN_03060 0.78 -0.0
521,249 + -0.2
521,295 + -0.1
521,302 + +0.6
521,303 - -0.1
521,316 + +0.4
521,317 - -0.2
521,563 - manC HEPCGN_03065 0.17 +0.6
521,632 - manC HEPCGN_03065 0.22 +0.3
521,651 + manC HEPCGN_03065 0.23 +0.1
521,652 - manC HEPCGN_03065 0.23 +0.1
521,652 - manC HEPCGN_03065 0.23 +0.7
521,728 + manC HEPCGN_03065 0.29 -0.2
521,729 - manC HEPCGN_03065 0.29 +0.6
521,795 - manC HEPCGN_03065 0.33 -0.2
521,797 - manC HEPCGN_03065 0.33 +1.4
521,893 + manC HEPCGN_03065 0.40 +0.3
521,894 - manC HEPCGN_03065 0.40 -0.9
521,953 + manC HEPCGN_03065 0.44 -0.5
521,953 + manC HEPCGN_03065 0.44 +1.1
522,250 + manC HEPCGN_03065 0.65 -1.2
522,250 + manC HEPCGN_03065 0.65 +0.4
522,251 - manC HEPCGN_03065 0.65 +0.8
522,251 - manC HEPCGN_03065 0.65 -0.2
522,251 - manC HEPCGN_03065 0.65 -0.6
522,251 - manC HEPCGN_03065 0.65 +0.5
522,251 - manC HEPCGN_03065 0.65 +1.3
522,251 - manC HEPCGN_03065 0.65 -0.1
522,251 - manC HEPCGN_03065 0.65 -1.1
522,251 - manC HEPCGN_03065 0.65 +0.6
522,257 - manC HEPCGN_03065 0.65 +0.3
522,425 - manC HEPCGN_03065 0.77 +0.3
522,442 + manC HEPCGN_03065 0.78 +0.4
522,516 - manC HEPCGN_03065 0.83 +0.1
522,620 - -0.2
522,700 + +0.0
522,700 + +0.3
522,701 - -0.3
522,751 + -1.5
522,752 - +0.1
522,752 - -0.6
522,754 + +1.6
522,775 + -0.2
522,854 + -0.5
522,882 + +0.1
523,139 + cpsG HEPCGN_03070 0.21 -1.3
523,340 + cpsG HEPCGN_03070 0.35 -0.1
523,340 + cpsG HEPCGN_03070 0.35 -0.0
523,359 - cpsG HEPCGN_03070 0.37 -0.0
523,464 - cpsG HEPCGN_03070 0.44 +1.1

Or see this region's nucleotide sequence