Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiI and HEPCGN_01795 are separated by 73 nucleotides HEPCGN_01795 and fiu are separated by 44 nucleotides fiu and mcbA are separated by 264 nucleotides mcbA and rlmF are separated by 275 nucleotides
HEPCGN_01790: ybiI - C4-type zinc finger protein YbiI, at 281,862 to 282,128
ybiI
HEPCGN_01795: HEPCGN_01795 - PKHD-type hydroxylase YbiX, at 282,202 to 282,876
_01795
HEPCGN_01800: fiu - catecholate siderophore receptor Fiu, at 282,921 to 285,203
fiu
HEPCGN_01805: mcbA - DUF1471 domain-containing protein, at 285,468 to 285,728
mcbA
HEPCGN_01810: rlmF - 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF, at 286,004 to 286,930
rlmF
Position (kb) 282
283
284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 282.019 kb on + strand, within ybiI at 282.077 kb on + strand, within ybiI at 282.160 kb on + strand at 282.161 kb on - strand at 282.161 kb on - strand at 282.170 kb on + strand at 282.170 kb on + strand at 282.171 kb on - strand at 282.173 kb on + strand at 282.174 kb on - strand at 282.175 kb on + strand at 282.175 kb on + strand at 282.175 kb on + strand at 282.176 kb on - strand at 282.176 kb on - strand at 282.176 kb on - strand at 282.231 kb on + strand at 282.364 kb on - strand, within HEPCGN_01795 at 282.426 kb on - strand, within HEPCGN_01795 at 282.426 kb on - strand, within HEPCGN_01795 at 282.481 kb on - strand, within HEPCGN_01795 at 282.546 kb on + strand, within HEPCGN_01795 at 282.722 kb on + strand, within HEPCGN_01795 at 282.724 kb on + strand, within HEPCGN_01795 at 282.742 kb on + strand, within HEPCGN_01795 at 282.742 kb on + strand, within HEPCGN_01795 at 282.760 kb on - strand, within HEPCGN_01795 at 282.872 kb on + strand at 282.873 kb on - strand at 282.873 kb on - strand at 282.873 kb on - strand at 282.873 kb on - strand at 282.880 kb on - strand at 282.880 kb on - strand at 283.006 kb on + strand at 283.006 kb on + strand at 283.007 kb on - strand at 283.027 kb on + strand at 283.139 kb on + strand at 283.140 kb on - strand at 283.145 kb on + strand at 283.145 kb on + strand at 283.146 kb on - strand at 283.156 kb on + strand, within fiu at 283.301 kb on + strand, within fiu at 283.377 kb on - strand, within fiu at 283.390 kb on + strand, within fiu at 283.434 kb on - strand, within fiu at 283.456 kb on - strand, within fiu at 283.606 kb on + strand, within fiu at 283.607 kb on - strand, within fiu at 283.610 kb on + strand, within fiu at 283.610 kb on + strand, within fiu at 283.610 kb on + strand, within fiu at 283.610 kb on + strand, within fiu at 283.610 kb on + strand, within fiu at 283.610 kb on + strand, within fiu at 283.611 kb on - strand, within fiu at 283.611 kb on - strand, within fiu at 283.611 kb on - strand, within fiu at 283.613 kb on + strand, within fiu at 283.615 kb on + strand, within fiu at 283.615 kb on + strand, within fiu at 283.616 kb on - strand, within fiu at 283.620 kb on - strand, within fiu at 283.620 kb on - strand, within fiu at 283.620 kb on - strand, within fiu at 283.620 kb on - strand, within fiu at 283.620 kb on - strand, within fiu at 283.620 kb on - strand, within fiu at 283.642 kb on + strand, within fiu at 283.859 kb on - strand, within fiu at 283.871 kb on + strand, within fiu at 283.946 kb on + strand, within fiu at 283.946 kb on + strand, within fiu at 283.959 kb on + strand, within fiu at 284.037 kb on - strand, within fiu at 284.047 kb on + strand, within fiu at 284.047 kb on + strand, within fiu at 284.048 kb on - strand, within fiu at 284.195 kb on - strand, within fiu at 284.226 kb on - strand, within fiu at 284.226 kb on - strand, within fiu at 284.243 kb on + strand, within fiu at 284.446 kb on + strand, within fiu at 284.446 kb on + strand, within fiu at 284.450 kb on + strand, within fiu at 284.450 kb on + strand, within fiu at 284.451 kb on - strand, within fiu at 284.582 kb on + strand, within fiu at 284.744 kb on + strand, within fiu at 284.748 kb on + strand, within fiu at 284.815 kb on + strand, within fiu at 284.816 kb on - strand, within fiu at 284.816 kb on - strand, within fiu at 284.816 kb on - strand, within fiu at 284.819 kb on + strand, within fiu at 284.820 kb on - strand, within fiu at 284.825 kb on + strand, within fiu at 284.847 kb on - strand, within fiu at 284.848 kb on + strand, within fiu at 284.848 kb on + strand, within fiu at 284.848 kb on + strand, within fiu at 284.849 kb on - strand, within fiu at 284.874 kb on - strand, within fiu at 285.137 kb on + strand at 285.137 kb on + strand at 285.224 kb on - strand at 285.225 kb on + strand at 285.225 kb on + strand at 285.225 kb on + strand at 285.225 kb on + strand at 285.226 kb on - strand at 285.226 kb on - strand at 285.226 kb on - strand at 285.226 kb on - strand at 285.385 kb on - strand at 285.469 kb on + strand at 285.476 kb on - strand at 285.489 kb on - strand at 285.521 kb on + strand, within mcbA at 285.521 kb on + strand, within mcbA at 285.529 kb on + strand, within mcbA at 285.529 kb on + strand, within mcbA at 285.586 kb on - strand, within mcbA at 285.586 kb on - strand, within mcbA at 285.648 kb on - strand, within mcbA at 285.667 kb on + strand, within mcbA at 285.728 kb on + strand at 285.747 kb on - strand at 285.747 kb on - strand at 285.772 kb on - strand at 285.872 kb on + strand at 285.948 kb on + strand at 285.948 kb on + strand at 285.949 kb on - strand at 285.949 kb on - strand at 285.978 kb on + strand at 285.979 kb on - strand at 286.003 kb on + strand at 286.135 kb on - strand, within rlmF
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 282,019 + ybiI HEPCGN_01790 0.59 +1.6 282,077 + ybiI HEPCGN_01790 0.81 -0.5 282,160 + +0.4 282,161 - -0.4 282,161 - +0.5 282,170 + +0.6 282,170 + +0.1 282,171 - -0.5 282,173 + -0.1 282,174 - +0.5 282,175 + +0.6 282,175 + -0.6 282,175 + +0.6 282,176 - +0.2 282,176 - +0.2 282,176 - -0.1 282,231 + +0.4 282,364 - HEPCGN_01795 0.24 +1.0 282,426 - HEPCGN_01795 0.33 +0.4 282,426 - HEPCGN_01795 0.33 +0.3 282,481 - HEPCGN_01795 0.41 +0.5 282,546 + HEPCGN_01795 0.51 -0.2 282,722 + HEPCGN_01795 0.77 -0.1 282,724 + HEPCGN_01795 0.77 +0.0 282,742 + HEPCGN_01795 0.80 +0.5 282,742 + HEPCGN_01795 0.80 -0.7 282,760 - HEPCGN_01795 0.83 -0.2 282,872 + -1.5 282,873 - -0.0 282,873 - -0.0 282,873 - +0.0 282,873 - -0.0 282,880 - -0.1 282,880 - -1.8 283,006 + -0.4 283,006 + -3.1 283,007 - -0.1 283,027 + -0.6 283,139 + -0.5 283,140 - -0.6 283,145 + +0.7 283,145 + +0.2 283,146 - -1.7 283,156 + fiu HEPCGN_01800 0.10 -0.7 283,301 + fiu HEPCGN_01800 0.17 -0.0 283,377 - fiu HEPCGN_01800 0.20 -0.5 283,390 + fiu HEPCGN_01800 0.21 +0.7 283,434 - fiu HEPCGN_01800 0.22 +0.3 283,456 - fiu HEPCGN_01800 0.23 +0.2 283,606 + fiu HEPCGN_01800 0.30 +0.8 283,607 - fiu HEPCGN_01800 0.30 -0.9 283,610 + fiu HEPCGN_01800 0.30 -2.2 283,610 + fiu HEPCGN_01800 0.30 -0.8 283,610 + fiu HEPCGN_01800 0.30 -1.2 283,610 + fiu HEPCGN_01800 0.30 -0.4 283,610 + fiu HEPCGN_01800 0.30 +0.4 283,610 + fiu HEPCGN_01800 0.30 +0.2 283,611 - fiu HEPCGN_01800 0.30 +0.3 283,611 - fiu HEPCGN_01800 0.30 -0.5 283,611 - fiu HEPCGN_01800 0.30 -1.6 283,613 + fiu HEPCGN_01800 0.30 +0.0 283,615 + fiu HEPCGN_01800 0.30 -1.0 283,615 + fiu HEPCGN_01800 0.30 -0.3 283,616 - fiu HEPCGN_01800 0.30 +1.1 283,620 - fiu HEPCGN_01800 0.31 +0.2 283,620 - fiu HEPCGN_01800 0.31 -0.4 283,620 - fiu HEPCGN_01800 0.31 +0.5 283,620 - fiu HEPCGN_01800 0.31 -1.4 283,620 - fiu HEPCGN_01800 0.31 -0.9 283,620 - fiu HEPCGN_01800 0.31 +0.0 283,642 + fiu HEPCGN_01800 0.32 -0.6 283,859 - fiu HEPCGN_01800 0.41 -0.5 283,871 + fiu HEPCGN_01800 0.42 -0.1 283,946 + fiu HEPCGN_01800 0.45 +1.0 283,946 + fiu HEPCGN_01800 0.45 +1.0 283,959 + fiu HEPCGN_01800 0.45 +0.4 284,037 - fiu HEPCGN_01800 0.49 -0.2 284,047 + fiu HEPCGN_01800 0.49 +1.4 284,047 + fiu HEPCGN_01800 0.49 -0.0 284,048 - fiu HEPCGN_01800 0.49 +0.3 284,195 - fiu HEPCGN_01800 0.56 +0.2 284,226 - fiu HEPCGN_01800 0.57 -0.5 284,226 - fiu HEPCGN_01800 0.57 +0.7 284,243 + fiu HEPCGN_01800 0.58 -0.4 284,446 + fiu HEPCGN_01800 0.67 -0.2 284,446 + fiu HEPCGN_01800 0.67 -0.6 284,450 + fiu HEPCGN_01800 0.67 +0.8 284,450 + fiu HEPCGN_01800 0.67 +0.2 284,451 - fiu HEPCGN_01800 0.67 -1.0 284,582 + fiu HEPCGN_01800 0.73 -0.5 284,744 + fiu HEPCGN_01800 0.80 +0.3 284,748 + fiu HEPCGN_01800 0.80 -0.7 284,815 + fiu HEPCGN_01800 0.83 -1.2 284,816 - fiu HEPCGN_01800 0.83 +0.2 284,816 - fiu HEPCGN_01800 0.83 -0.2 284,816 - fiu HEPCGN_01800 0.83 +0.3 284,819 + fiu HEPCGN_01800 0.83 -0.6 284,820 - fiu HEPCGN_01800 0.83 +0.7 284,825 + fiu HEPCGN_01800 0.83 -1.8 284,847 - fiu HEPCGN_01800 0.84 +0.1 284,848 + fiu HEPCGN_01800 0.84 +0.2 284,848 + fiu HEPCGN_01800 0.84 +0.1 284,848 + fiu HEPCGN_01800 0.84 -0.3 284,849 - fiu HEPCGN_01800 0.84 -0.8 284,874 - fiu HEPCGN_01800 0.86 +0.4 285,137 + +0.3 285,137 + -0.6 285,224 - -0.0 285,225 + +0.3 285,225 + +0.4 285,225 + +1.0 285,225 + -0.3 285,226 - +0.1 285,226 - +1.0 285,226 - -0.1 285,226 - -2.0 285,385 - +0.5 285,469 + -2.0 285,476 - -3.2 285,489 - +0.2 285,521 + mcbA HEPCGN_01805 0.20 +0.1 285,521 + mcbA HEPCGN_01805 0.20 +1.1 285,529 + mcbA HEPCGN_01805 0.23 -0.2 285,529 + mcbA HEPCGN_01805 0.23 +1.1 285,586 - mcbA HEPCGN_01805 0.45 +0.4 285,586 - mcbA HEPCGN_01805 0.45 +0.7 285,648 - mcbA HEPCGN_01805 0.69 +0.4 285,667 + mcbA HEPCGN_01805 0.76 -0.2 285,728 + +0.5 285,747 - +0.7 285,747 - -0.1 285,772 - +0.2 285,872 + +0.6 285,948 + -0.2 285,948 + -0.3 285,949 - +0.0 285,949 - -0.1 285,978 + +0.1 285,979 - -1.7 286,003 + +0.3 286,135 - rlmF HEPCGN_01810 0.14 +0.4
Or see this region's nucleotide sequence