Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS12140 and A4249_RS12145 are separated by 77 nucleotides A4249_RS12145 and A4249_RS12150 overlap by 4 nucleotides A4249_RS12150 and A4249_RS12155 are separated by 120 nucleotides A4249_RS12155 and A4249_RS12160 overlap by 4 nucleotides
A4249_RS12140: A4249_RS12140 - ATP-binding protein, at 2,438,687 to 2,439,742
_RS12140
A4249_RS12145: A4249_RS12145 - HPr family phosphocarrier protein, at 2,439,820 to 2,440,092
_RS12145
A4249_RS12150: A4249_RS12150 - PTS sugar transporter subunit IIA, at 2,440,089 to 2,440,493
_RS12150
A4249_RS12155: A4249_RS12155 - HPr kinase/phosphatase C-terminal domain-containing protein, at 2,440,614 to 2,441,042
_RS12155
A4249_RS12160: A4249_RS12160 - ATP-binding protein, at 2,441,039 to 2,442,649
_RS12160
Position (kb)
2439
2440
2441 Strain fitness (log2 ratio)
-2
-1
0
1 at 2438.858 kb on + strand, within A4249_RS12140 at 2438.858 kb on + strand, within A4249_RS12140 at 2438.858 kb on + strand, within A4249_RS12140 at 2438.858 kb on + strand, within A4249_RS12140 at 2438.858 kb on + strand, within A4249_RS12140 at 2438.858 kb on + strand, within A4249_RS12140 at 2438.859 kb on - strand, within A4249_RS12140 at 2438.859 kb on - strand, within A4249_RS12140 at 2438.859 kb on - strand, within A4249_RS12140 at 2438.859 kb on - strand, within A4249_RS12140 at 2438.859 kb on - strand, within A4249_RS12140 at 2439.738 kb on + strand at 2439.739 kb on - strand at 2439.739 kb on - strand at 2439.740 kb on + strand at 2439.741 kb on - strand at 2439.741 kb on - strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.129 kb on + strand at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.130 kb on - strand, within A4249_RS12150 at 2440.571 kb on + strand at 2440.571 kb on + strand at 2440.571 kb on + strand at 2440.572 kb on - strand at 2440.594 kb on + strand at 2440.594 kb on + strand at 2440.594 kb on + strand at 2440.595 kb on - strand at 2440.595 kb on - strand at 2440.595 kb on - strand at 2440.595 kb on - strand at 2440.595 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 2,438,858 + A4249_RS12140 0.16 -0.3 2,438,858 + A4249_RS12140 0.16 +0.4 2,438,858 + A4249_RS12140 0.16 -0.6 2,438,858 + A4249_RS12140 0.16 -1.8 2,438,858 + A4249_RS12140 0.16 +0.2 2,438,858 + A4249_RS12140 0.16 +0.9 2,438,859 - A4249_RS12140 0.16 +0.8 2,438,859 - A4249_RS12140 0.16 -0.8 2,438,859 - A4249_RS12140 0.16 +0.0 2,438,859 - A4249_RS12140 0.16 +0.3 2,438,859 - A4249_RS12140 0.16 -0.7 2,439,738 + -0.4 2,439,739 - +0.9 2,439,739 - +0.3 2,439,740 + -0.3 2,439,741 - -0.3 2,439,741 - +0.2 2,440,129 + +0.1 2,440,129 + -0.5 2,440,129 + -0.4 2,440,129 + -0.4 2,440,129 + -0.2 2,440,129 + +0.0 2,440,129 + -0.5 2,440,129 + -0.6 2,440,129 + -0.2 2,440,129 + -0.5 2,440,129 + +0.0 2,440,129 + +0.0 2,440,129 + +0.4 2,440,130 - A4249_RS12150 0.10 -1.0 2,440,130 - A4249_RS12150 0.10 -0.5 2,440,130 - A4249_RS12150 0.10 +1.4 2,440,130 - A4249_RS12150 0.10 +0.2 2,440,130 - A4249_RS12150 0.10 +0.0 2,440,130 - A4249_RS12150 0.10 -0.4 2,440,130 - A4249_RS12150 0.10 -0.6 2,440,130 - A4249_RS12150 0.10 +0.2 2,440,130 - A4249_RS12150 0.10 -0.2 2,440,130 - A4249_RS12150 0.10 -0.9 2,440,130 - A4249_RS12150 0.10 -0.8 2,440,130 - A4249_RS12150 0.10 -0.7 2,440,130 - A4249_RS12150 0.10 -0.1 2,440,571 + -0.1 2,440,571 + -0.8 2,440,571 + +0.0 2,440,572 - -0.1 2,440,594 + +0.1 2,440,594 + -0.3 2,440,594 + +0.2 2,440,595 - -0.8 2,440,595 - +0.0 2,440,595 - -0.0 2,440,595 - -0.1 2,440,595 - -0.1
Or see this region's nucleotide sequence