Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10735

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10725 and A4249_RS10730 overlap by 8 nucleotidesA4249_RS10730 and A4249_RS10735 are separated by 1 nucleotidesA4249_RS10735 and A4249_RS17005 are separated by 29 nucleotidesA4249_RS17005 and A4249_RS17010 are separated by 34 nucleotides A4249_RS10725: A4249_RS10725 - glucose-6-phosphate dehydrogenase, at 2,155,318 to 2,156,778 _RS10725 A4249_RS10730: A4249_RS10730 - 6-phosphogluconolactonase, at 2,156,771 to 2,157,487 _RS10730 A4249_RS10735: A4249_RS10735 - phosphogluconate dehydratase, at 2,157,489 to 2,159,378 _RS10735 A4249_RS17005: A4249_RS17005 - glucokinase, at 2,159,408 to 2,159,950 _RS17005 A4249_RS17010: A4249_RS17010 - glucokinase, at 2,159,985 to 2,160,395 _RS17010 Position (kb) 2157 2158 2159 2160Strain fitness (log2 ratio) -2 -1 0 1 2at 2157.562 kb on - strandat 2157.715 kb on - strand, within A4249_RS10735at 2157.715 kb on - strand, within A4249_RS10735at 2157.715 kb on - strand, within A4249_RS10735at 2157.715 kb on - strand, within A4249_RS10735at 2158.082 kb on - strand, within A4249_RS10735at 2159.377 kb on - strandat 2159.377 kb on - strandat 2159.377 kb on - strandat 2159.377 kb on - strandat 2159.543 kb on + strand, within A4249_RS17005at 2159.543 kb on + strand, within A4249_RS17005at 2159.544 kb on - strand, within A4249_RS17005at 2160.210 kb on + strand, within A4249_RS17010at 2160.210 kb on + strand, within A4249_RS17010at 2160.210 kb on + strand, within A4249_RS17010at 2160.210 kb on + strand, within A4249_RS17010at 2160.210 kb on + strand, within A4249_RS17010at 2160.211 kb on - strand, within A4249_RS17010at 2160.211 kb on - strand, within A4249_RS17010at 2160.211 kb on - strand, within A4249_RS17010at 2160.303 kb on + strand, within A4249_RS17010at 2160.303 kb on + strand, within A4249_RS17010at 2160.303 kb on + strand, within A4249_RS17010at 2160.304 kb on - strand, within A4249_RS17010at 2160.304 kb on - strand, within A4249_RS17010at 2160.304 kb on - strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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2,157,562 - +0.6
2,157,715 - A4249_RS10735 0.12 +0.1
2,157,715 - A4249_RS10735 0.12 -0.5
2,157,715 - A4249_RS10735 0.12 +0.1
2,157,715 - A4249_RS10735 0.12 +0.6
2,158,082 - A4249_RS10735 0.31 +0.0
2,159,377 - -2.7
2,159,377 - -0.4
2,159,377 - -0.5
2,159,377 - +0.0
2,159,543 + A4249_RS17005 0.25 +0.3
2,159,543 + A4249_RS17005 0.25 +0.6
2,159,544 - A4249_RS17005 0.25 -0.3
2,160,210 + A4249_RS17010 0.55 +0.1
2,160,210 + A4249_RS17010 0.55 -0.1
2,160,210 + A4249_RS17010 0.55 +1.1
2,160,210 + A4249_RS17010 0.55 -0.4
2,160,210 + A4249_RS17010 0.55 +0.6
2,160,211 - A4249_RS17010 0.55 +0.1
2,160,211 - A4249_RS17010 0.55 +0.1
2,160,211 - A4249_RS17010 0.55 +0.2
2,160,303 + A4249_RS17010 0.77 +0.2
2,160,303 + A4249_RS17010 0.77 -1.4
2,160,303 + A4249_RS17010 0.77 -0.5
2,160,304 - A4249_RS17010 0.78 -0.1
2,160,304 - A4249_RS17010 0.78 -0.2
2,160,304 - A4249_RS17010 0.78 +0.3
2,160,305 + A4249_RS17010 0.78 +0.1
2,160,305 + A4249_RS17010 0.78 +2.2
2,160,305 + A4249_RS17010 0.78 +0.3
2,160,305 + A4249_RS17010 0.78 -0.3
2,160,305 + A4249_RS17010 0.78 -0.2
2,160,305 + A4249_RS17010 0.78 +0.0
2,160,305 + A4249_RS17010 0.78 -0.0
2,160,305 + A4249_RS17010 0.78 +0.1
2,160,305 + A4249_RS17010 0.78 +0.3
2,160,305 + A4249_RS17010 0.78 +0.3
2,160,306 - A4249_RS17010 0.78 +0.4
2,160,306 - A4249_RS17010 0.78 -0.3
2,160,306 - A4249_RS17010 0.78 +0.2
2,160,306 - A4249_RS17010 0.78 +0.4
2,160,306 - A4249_RS17010 0.78 +0.8
2,160,306 - A4249_RS17010 0.78 +0.3

Or see this region's nucleotide sequence