Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10225

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10220 and A4249_RS10225 are separated by 707 nucleotidesA4249_RS10225 and A4249_RS10230 are separated by 44 nucleotides A4249_RS10220: A4249_RS10220 - PAS domain S-box protein, at 2,049,073 to 2,051,967 _RS10220 A4249_RS10225: A4249_RS10225 - energy transducer TonB, at 2,052,675 to 2,053,841 _RS10225 A4249_RS10230: A4249_RS10230 - ABC transporter substrate-binding protein, at 2,053,886 to 2,054,926 _RS10230 Position (kb) 2052 2053 2054Strain fitness (log2 ratio) -2 -1 0 1 2at 2051.687 kb on + strandat 2051.687 kb on + strandat 2051.687 kb on + strandat 2051.687 kb on + strandat 2051.687 kb on + strandat 2051.688 kb on - strandat 2051.688 kb on - strandat 2051.688 kb on - strandat 2051.726 kb on + strandat 2051.727 kb on - strandat 2051.750 kb on + strandat 2051.750 kb on + strandat 2051.750 kb on + strandat 2051.750 kb on + strandat 2051.750 kb on + strandat 2051.751 kb on - strandat 2051.828 kb on + strandat 2051.828 kb on + strandat 2051.828 kb on + strandat 2051.828 kb on + strandat 2051.829 kb on - strandat 2051.829 kb on - strandat 2051.928 kb on + strandat 2051.934 kb on + strandat 2051.934 kb on + strandat 2051.934 kb on + strandat 2051.935 kb on - strandat 2051.935 kb on - strandat 2051.935 kb on - strandat 2051.938 kb on + strandat 2051.938 kb on + strandat 2051.938 kb on + strandat 2051.938 kb on + strandat 2051.938 kb on + strandat 2051.938 kb on + strandat 2051.938 kb on + strandat 2051.938 kb on + strandat 2051.938 kb on + strandat 2051.939 kb on - strandat 2051.939 kb on - strandat 2051.939 kb on - strandat 2051.949 kb on + strandat 2051.950 kb on - strandat 2052.054 kb on + strandat 2052.054 kb on + strandat 2052.054 kb on + strandat 2052.054 kb on + strandat 2052.055 kb on - strandat 2052.055 kb on - strandat 2052.062 kb on + strandat 2052.063 kb on - strandat 2052.063 kb on - strandat 2052.063 kb on - strandat 2052.199 kb on - strandat 2052.199 kb on - strandat 2052.199 kb on - strandat 2052.322 kb on + strandat 2052.322 kb on + strandat 2052.323 kb on - strandat 2052.419 kb on + strandat 2052.420 kb on - strandat 2052.420 kb on - strandat 2052.460 kb on + strandat 2052.461 kb on - strandat 2052.461 kb on - strandat 2052.461 kb on - strandat 2052.625 kb on + strandat 2052.830 kb on + strand, within A4249_RS10225at 2052.831 kb on - strand, within A4249_RS10225at 2052.866 kb on + strand, within A4249_RS10225at 2052.866 kb on + strand, within A4249_RS10225at 2052.867 kb on - strand, within A4249_RS10225at 2052.867 kb on - strand, within A4249_RS10225at 2052.971 kb on + strand, within A4249_RS10225at 2052.971 kb on + strand, within A4249_RS10225at 2052.971 kb on + strand, within A4249_RS10225at 2052.972 kb on - strand, within A4249_RS10225at 2052.972 kb on - strand, within A4249_RS10225at 2053.128 kb on + strand, within A4249_RS10225at 2053.128 kb on + strand, within A4249_RS10225at 2053.129 kb on - strand, within A4249_RS10225at 2053.129 kb on - strand, within A4249_RS10225at 2053.249 kb on - strand, within A4249_RS10225at 2053.257 kb on + strand, within A4249_RS10225at 2053.258 kb on - strand, within A4249_RS10225at 2053.258 kb on - strand, within A4249_RS10225at 2053.370 kb on + strand, within A4249_RS10225at 2053.370 kb on + strand, within A4249_RS10225at 2053.371 kb on - strand, within A4249_RS10225at 2053.371 kb on - strand, within A4249_RS10225at 2053.371 kb on - strand, within A4249_RS10225at 2053.458 kb on + strand, within A4249_RS10225at 2053.458 kb on + strand, within A4249_RS10225at 2053.458 kb on + strand, within A4249_RS10225at 2053.459 kb on - strand, within A4249_RS10225at 2053.459 kb on - strand, within A4249_RS10225at 2053.576 kb on - strand, within A4249_RS10225at 2053.660 kb on + strand, within A4249_RS10225at 2053.660 kb on + strand, within A4249_RS10225at 2053.660 kb on + strand, within A4249_RS10225at 2053.660 kb on + strand, within A4249_RS10225at 2053.661 kb on - strand, within A4249_RS10225at 2053.661 kb on - strand, within A4249_RS10225at 2053.661 kb on - strand, within A4249_RS10225at 2053.661 kb on - strand, within A4249_RS10225at 2053.661 kb on - strand, within A4249_RS10225at 2053.661 kb on - strand, within A4249_RS10225at 2053.661 kb on - strand, within A4249_RS10225at 2053.765 kb on + strandat 2053.765 kb on + strandat 2053.765 kb on + strandat 2053.766 kb on - strandat 2053.766 kb on - strandat 2053.766 kb on - strandat 2053.779 kb on + strandat 2053.779 kb on + strandat 2053.779 kb on + strandat 2053.779 kb on + strandat 2053.780 kb on - strandat 2053.780 kb on - strandat 2053.780 kb on - strandat 2053.780 kb on - strandat 2053.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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2,051,687 + +0.2
2,051,687 + +0.1
2,051,687 + +0.7
2,051,687 + +0.5
2,051,687 + +0.0
2,051,688 - +0.7
2,051,688 - -0.2
2,051,688 - -0.3
2,051,726 + -0.2
2,051,727 - +0.4
2,051,750 + -0.3
2,051,750 + -0.3
2,051,750 + +0.2
2,051,750 + +0.8
2,051,750 + -1.1
2,051,751 - -0.4
2,051,828 + -0.2
2,051,828 + +0.2
2,051,828 + -0.4
2,051,828 + +0.2
2,051,829 - +0.3
2,051,829 - +1.7
2,051,928 + +0.5
2,051,934 + +0.5
2,051,934 + +0.1
2,051,934 + -0.5
2,051,935 - +0.0
2,051,935 - +0.6
2,051,935 - -0.5
2,051,938 + +1.2
2,051,938 + +0.4
2,051,938 + +0.0
2,051,938 + -0.3
2,051,938 + -0.0
2,051,938 + +0.9
2,051,938 + -1.1
2,051,938 + -0.1
2,051,938 + -0.2
2,051,939 - -1.8
2,051,939 - -0.4
2,051,939 - +0.9
2,051,949 + -1.0
2,051,950 - -0.8
2,052,054 + -0.3
2,052,054 + +0.0
2,052,054 + +0.7
2,052,054 + -0.1
2,052,055 - +0.1
2,052,055 - -0.2
2,052,062 + -0.3
2,052,063 - -0.0
2,052,063 - -0.2
2,052,063 - +0.1
2,052,199 - +0.2
2,052,199 - -0.1
2,052,199 - +0.5
2,052,322 + +0.0
2,052,322 + -0.2
2,052,323 - +0.1
2,052,419 + +0.1
2,052,420 - -0.4
2,052,420 - +0.1
2,052,460 + -0.2
2,052,461 - -1.4
2,052,461 - -0.4
2,052,461 - -0.4
2,052,625 + +0.5
2,052,830 + A4249_RS10225 0.13 -0.3
2,052,831 - A4249_RS10225 0.13 +0.5
2,052,866 + A4249_RS10225 0.16 +0.1
2,052,866 + A4249_RS10225 0.16 +0.2
2,052,867 - A4249_RS10225 0.16 -0.2
2,052,867 - A4249_RS10225 0.16 -0.0
2,052,971 + A4249_RS10225 0.25 +0.2
2,052,971 + A4249_RS10225 0.25 -0.3
2,052,971 + A4249_RS10225 0.25 -1.7
2,052,972 - A4249_RS10225 0.25 +0.2
2,052,972 - A4249_RS10225 0.25 -0.3
2,053,128 + A4249_RS10225 0.39 -0.3
2,053,128 + A4249_RS10225 0.39 +0.1
2,053,129 - A4249_RS10225 0.39 -0.3
2,053,129 - A4249_RS10225 0.39 -0.6
2,053,249 - A4249_RS10225 0.49 +0.1
2,053,257 + A4249_RS10225 0.50 -0.8
2,053,258 - A4249_RS10225 0.50 +0.1
2,053,258 - A4249_RS10225 0.50 +0.9
2,053,370 + A4249_RS10225 0.60 -0.6
2,053,370 + A4249_RS10225 0.60 +0.3
2,053,371 - A4249_RS10225 0.60 -0.6
2,053,371 - A4249_RS10225 0.60 +0.4
2,053,371 - A4249_RS10225 0.60 -0.2
2,053,458 + A4249_RS10225 0.67 -0.2
2,053,458 + A4249_RS10225 0.67 -0.5
2,053,458 + A4249_RS10225 0.67 +0.3
2,053,459 - A4249_RS10225 0.67 +0.1
2,053,459 - A4249_RS10225 0.67 -0.0
2,053,576 - A4249_RS10225 0.77 -0.4
2,053,660 + A4249_RS10225 0.84 -0.1
2,053,660 + A4249_RS10225 0.84 -0.4
2,053,660 + A4249_RS10225 0.84 -0.6
2,053,660 + A4249_RS10225 0.84 -0.7
2,053,661 - A4249_RS10225 0.84 +0.5
2,053,661 - A4249_RS10225 0.84 +0.0
2,053,661 - A4249_RS10225 0.84 -1.5
2,053,661 - A4249_RS10225 0.84 +0.5
2,053,661 - A4249_RS10225 0.84 +0.6
2,053,661 - A4249_RS10225 0.84 -0.4
2,053,661 - A4249_RS10225 0.84 +0.1
2,053,765 + +0.5
2,053,765 + -0.6
2,053,765 + +0.9
2,053,766 - -0.6
2,053,766 - +0.2
2,053,766 - +0.3
2,053,779 + -0.4
2,053,779 + +1.8
2,053,779 + -0.3
2,053,779 + -0.6
2,053,780 - +0.0
2,053,780 - +0.5
2,053,780 - +0.0
2,053,780 - +0.1
2,053,780 - +0.3

Or see this region's nucleotide sequence