Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09790 and A4249_RS09795 are separated by 16 nucleotides A4249_RS09795 and A4249_RS09800 overlap by 11 nucleotides A4249_RS09800 and A4249_RS09805 are separated by 47 nucleotides A4249_RS09805 and A4249_RS09810 overlap by 14 nucleotides
A4249_RS09790: A4249_RS09790 - alpha/beta hydrolase, at 1,951,551 to 1,952,576
_RS09790
A4249_RS09795: A4249_RS09795 - uracil-DNA glycosylase family protein, at 1,952,593 to 1,953,234
_RS09795
A4249_RS09800: A4249_RS09800 - DUF3253 domain-containing protein, at 1,953,224 to 1,953,526
_RS09800
A4249_RS09805: A4249_RS09805 - PaaI family thioesterase, at 1,953,574 to 1,954,005
_RS09805
A4249_RS09810: A4249_RS09810 - family 43 glycosylhydrolase, at 1,953,992 to 1,955,452
_RS09810
Position (kb) 1952
1953
1954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1951.651 kb on + strand at 1951.651 kb on + strand at 1951.652 kb on - strand at 1951.703 kb on - strand, within A4249_RS09790 at 1951.795 kb on + strand, within A4249_RS09790 at 1951.795 kb on + strand, within A4249_RS09790 at 1951.795 kb on + strand, within A4249_RS09790 at 1951.795 kb on + strand, within A4249_RS09790 at 1951.796 kb on - strand, within A4249_RS09790 at 1951.796 kb on - strand, within A4249_RS09790 at 1951.867 kb on + strand, within A4249_RS09790 at 1951.867 kb on + strand, within A4249_RS09790 at 1951.867 kb on + strand, within A4249_RS09790 at 1951.867 kb on + strand, within A4249_RS09790 at 1951.868 kb on - strand, within A4249_RS09790 at 1951.868 kb on - strand, within A4249_RS09790 at 1951.934 kb on + strand, within A4249_RS09790 at 1951.934 kb on + strand, within A4249_RS09790 at 1951.935 kb on - strand, within A4249_RS09790 at 1951.935 kb on - strand, within A4249_RS09790 at 1952.141 kb on + strand, within A4249_RS09790 at 1952.141 kb on + strand, within A4249_RS09790 at 1952.141 kb on + strand, within A4249_RS09790 at 1952.141 kb on + strand, within A4249_RS09790 at 1952.142 kb on - strand, within A4249_RS09790 at 1952.142 kb on - strand, within A4249_RS09790 at 1952.142 kb on - strand, within A4249_RS09790 at 1952.142 kb on - strand, within A4249_RS09790 at 1952.142 kb on - strand, within A4249_RS09790 at 1952.281 kb on + strand, within A4249_RS09790 at 1952.281 kb on + strand, within A4249_RS09790 at 1952.413 kb on + strand, within A4249_RS09790 at 1952.413 kb on + strand, within A4249_RS09790 at 1952.413 kb on + strand, within A4249_RS09790 at 1952.414 kb on - strand, within A4249_RS09790 at 1952.414 kb on - strand, within A4249_RS09790 at 1952.414 kb on - strand, within A4249_RS09790 at 1952.414 kb on - strand, within A4249_RS09790 at 1952.414 kb on - strand, within A4249_RS09790 at 1952.552 kb on + strand at 1952.552 kb on + strand at 1952.552 kb on + strand at 1952.552 kb on + strand at 1952.552 kb on + strand at 1952.553 kb on - strand at 1952.553 kb on - strand at 1952.553 kb on - strand at 1952.553 kb on - strand at 1952.681 kb on + strand, within A4249_RS09795 at 1952.682 kb on - strand, within A4249_RS09795 at 1952.682 kb on - strand, within A4249_RS09795 at 1952.730 kb on + strand, within A4249_RS09795 at 1952.730 kb on + strand, within A4249_RS09795 at 1952.731 kb on - strand, within A4249_RS09795 at 1952.731 kb on - strand, within A4249_RS09795 at 1952.774 kb on + strand, within A4249_RS09795 at 1952.774 kb on + strand, within A4249_RS09795 at 1952.774 kb on + strand, within A4249_RS09795 at 1952.774 kb on + strand, within A4249_RS09795 at 1952.775 kb on - strand, within A4249_RS09795 at 1952.775 kb on - strand, within A4249_RS09795 at 1952.775 kb on - strand, within A4249_RS09795 at 1952.847 kb on - strand, within A4249_RS09795 at 1952.966 kb on + strand, within A4249_RS09795 at 1953.008 kb on + strand, within A4249_RS09795 at 1953.008 kb on + strand, within A4249_RS09795 at 1953.008 kb on + strand, within A4249_RS09795 at 1953.008 kb on + strand, within A4249_RS09795 at 1953.009 kb on - strand, within A4249_RS09795 at 1953.009 kb on - strand, within A4249_RS09795 at 1953.009 kb on - strand, within A4249_RS09795 at 1953.009 kb on - strand, within A4249_RS09795 at 1953.009 kb on - strand, within A4249_RS09795 at 1953.009 kb on - strand, within A4249_RS09795 at 1953.020 kb on + strand, within A4249_RS09795 at 1953.020 kb on + strand, within A4249_RS09795 at 1953.020 kb on + strand, within A4249_RS09795 at 1953.020 kb on + strand, within A4249_RS09795 at 1953.020 kb on + strand, within A4249_RS09795 at 1953.020 kb on + strand, within A4249_RS09795 at 1953.021 kb on - strand, within A4249_RS09795 at 1953.021 kb on - strand, within A4249_RS09795 at 1953.021 kb on - strand, within A4249_RS09795 at 1953.117 kb on + strand, within A4249_RS09795 at 1953.117 kb on + strand, within A4249_RS09795 at 1953.117 kb on + strand, within A4249_RS09795 at 1953.117 kb on + strand, within A4249_RS09795 at 1953.117 kb on + strand, within A4249_RS09795 at 1953.118 kb on - strand, within A4249_RS09795 at 1953.118 kb on - strand, within A4249_RS09795 at 1953.118 kb on - strand, within A4249_RS09795 at 1953.118 kb on - strand, within A4249_RS09795 at 1953.118 kb on - strand, within A4249_RS09795 at 1953.213 kb on + strand at 1953.214 kb on - strand at 1953.434 kb on + strand, within A4249_RS09800 at 1953.434 kb on + strand, within A4249_RS09800 at 1953.434 kb on + strand, within A4249_RS09800 at 1953.434 kb on + strand, within A4249_RS09800 at 1953.434 kb on + strand, within A4249_RS09800 at 1953.434 kb on + strand, within A4249_RS09800 at 1953.435 kb on - strand, within A4249_RS09800 at 1953.435 kb on - strand, within A4249_RS09800 at 1953.435 kb on - strand, within A4249_RS09800 at 1953.435 kb on - strand, within A4249_RS09800 at 1953.533 kb on + strand at 1953.533 kb on + strand at 1953.533 kb on + strand at 1953.533 kb on + strand at 1953.533 kb on + strand at 1953.533 kb on + strand at 1953.534 kb on - strand at 1953.534 kb on - strand at 1953.534 kb on - strand at 1953.534 kb on - strand at 1953.535 kb on + strand at 1953.535 kb on + strand at 1953.535 kb on + strand at 1953.535 kb on + strand at 1953.535 kb on + strand at 1953.535 kb on + strand at 1953.535 kb on + strand at 1953.535 kb on + strand at 1953.536 kb on - strand at 1953.536 kb on - strand at 1953.536 kb on - strand at 1953.536 kb on - strand at 1953.536 kb on - strand at 1953.536 kb on - strand at 1953.536 kb on - strand at 1953.536 kb on - strand at 1953.555 kb on + strand at 1953.555 kb on + strand at 1953.555 kb on + strand at 1953.556 kb on - strand at 1953.556 kb on - strand at 1953.556 kb on - strand at 1953.559 kb on + strand at 1953.559 kb on + strand at 1953.559 kb on + strand at 1953.559 kb on + strand at 1953.560 kb on - strand at 1953.560 kb on - strand at 1953.560 kb on - strand at 1953.560 kb on - strand at 1953.560 kb on - strand at 1953.560 kb on - strand at 1953.625 kb on + strand, within A4249_RS09805 at 1953.625 kb on + strand, within A4249_RS09805 at 1953.625 kb on + strand, within A4249_RS09805 at 1953.625 kb on + strand, within A4249_RS09805 at 1953.626 kb on - strand, within A4249_RS09805 at 1953.626 kb on - strand, within A4249_RS09805 at 1953.626 kb on - strand, within A4249_RS09805 at 1953.626 kb on - strand, within A4249_RS09805 at 1953.667 kb on + strand, within A4249_RS09805 at 1953.667 kb on + strand, within A4249_RS09805 at 1953.667 kb on + strand, within A4249_RS09805 at 1953.667 kb on + strand, within A4249_RS09805 at 1953.667 kb on + strand, within A4249_RS09805 at 1953.668 kb on - strand, within A4249_RS09805 at 1953.668 kb on - strand, within A4249_RS09805 at 1953.668 kb on - strand, within A4249_RS09805 at 1953.726 kb on + strand, within A4249_RS09805 at 1953.726 kb on + strand, within A4249_RS09805 at 1953.726 kb on + strand, within A4249_RS09805 at 1953.726 kb on + strand, within A4249_RS09805 at 1953.726 kb on + strand, within A4249_RS09805 at 1953.726 kb on + strand, within A4249_RS09805 at 1953.726 kb on + strand, within A4249_RS09805 at 1953.726 kb on + strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.727 kb on - strand, within A4249_RS09805 at 1953.865 kb on + strand, within A4249_RS09805 at 1953.865 kb on + strand, within A4249_RS09805 at 1953.866 kb on - strand, within A4249_RS09805 at 1953.866 kb on - strand, within A4249_RS09805 at 1954.026 kb on + strand at 1954.026 kb on + strand at 1954.026 kb on + strand at 1954.027 kb on - strand at 1954.027 kb on - strand at 1954.027 kb on - strand at 1954.027 kb on - strand at 1954.068 kb on + strand at 1954.068 kb on + strand at 1954.068 kb on + strand at 1954.068 kb on + strand at 1954.068 kb on + strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.069 kb on - strand at 1954.176 kb on + strand, within A4249_RS09810 at 1954.176 kb on + strand, within A4249_RS09810 at 1954.176 kb on + strand, within A4249_RS09810 at 1954.176 kb on + strand, within A4249_RS09810 at 1954.177 kb on - strand, within A4249_RS09810 at 1954.177 kb on - strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.182 kb on + strand, within A4249_RS09810 at 1954.183 kb on - strand, within A4249_RS09810 at 1954.183 kb on - strand, within A4249_RS09810 at 1954.183 kb on - strand, within A4249_RS09810 at 1954.183 kb on - strand, within A4249_RS09810 at 1954.183 kb on - strand, within A4249_RS09810 at 1954.183 kb on - strand, within A4249_RS09810 at 1954.183 kb on - strand, within A4249_RS09810 at 1954.183 kb on - strand, within A4249_RS09810 at 1954.183 kb on - strand, within A4249_RS09810
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 1,951,651 + -0.5 1,951,651 + -0.3 1,951,652 - -0.0 1,951,703 - A4249_RS09790 0.15 -0.3 1,951,795 + A4249_RS09790 0.24 +0.2 1,951,795 + A4249_RS09790 0.24 -0.3 1,951,795 + A4249_RS09790 0.24 -0.5 1,951,795 + A4249_RS09790 0.24 -0.9 1,951,796 - A4249_RS09790 0.24 +0.2 1,951,796 - A4249_RS09790 0.24 -0.2 1,951,867 + A4249_RS09790 0.31 +0.0 1,951,867 + A4249_RS09790 0.31 -0.2 1,951,867 + A4249_RS09790 0.31 +0.5 1,951,867 + A4249_RS09790 0.31 -0.1 1,951,868 - A4249_RS09790 0.31 -1.0 1,951,868 - A4249_RS09790 0.31 -0.1 1,951,934 + A4249_RS09790 0.37 -0.6 1,951,934 + A4249_RS09790 0.37 +0.3 1,951,935 - A4249_RS09790 0.37 +0.1 1,951,935 - A4249_RS09790 0.37 +1.3 1,952,141 + A4249_RS09790 0.58 +0.7 1,952,141 + A4249_RS09790 0.58 -0.6 1,952,141 + A4249_RS09790 0.58 -0.0 1,952,141 + A4249_RS09790 0.58 +0.2 1,952,142 - A4249_RS09790 0.58 -0.5 1,952,142 - A4249_RS09790 0.58 +1.0 1,952,142 - A4249_RS09790 0.58 -0.3 1,952,142 - A4249_RS09790 0.58 -0.2 1,952,142 - A4249_RS09790 0.58 -1.0 1,952,281 + A4249_RS09790 0.71 +0.2 1,952,281 + A4249_RS09790 0.71 +0.9 1,952,413 + A4249_RS09790 0.84 -0.2 1,952,413 + A4249_RS09790 0.84 -0.1 1,952,413 + A4249_RS09790 0.84 -0.1 1,952,414 - A4249_RS09790 0.84 +0.8 1,952,414 - A4249_RS09790 0.84 -0.6 1,952,414 - A4249_RS09790 0.84 +0.7 1,952,414 - A4249_RS09790 0.84 +0.1 1,952,414 - A4249_RS09790 0.84 -0.6 1,952,552 + -1.5 1,952,552 + -0.4 1,952,552 + -0.4 1,952,552 + +0.3 1,952,552 + -0.7 1,952,553 - +0.4 1,952,553 - -0.1 1,952,553 - -0.5 1,952,553 - +0.2 1,952,681 + A4249_RS09795 0.14 -0.7 1,952,682 - A4249_RS09795 0.14 +0.1 1,952,682 - A4249_RS09795 0.14 +1.3 1,952,730 + A4249_RS09795 0.21 -1.1 1,952,730 + A4249_RS09795 0.21 -1.1 1,952,731 - A4249_RS09795 0.21 +0.4 1,952,731 - A4249_RS09795 0.21 -0.5 1,952,774 + A4249_RS09795 0.28 -0.4 1,952,774 + A4249_RS09795 0.28 -2.0 1,952,774 + A4249_RS09795 0.28 -0.7 1,952,774 + A4249_RS09795 0.28 +0.1 1,952,775 - A4249_RS09795 0.28 +0.6 1,952,775 - A4249_RS09795 0.28 +0.0 1,952,775 - A4249_RS09795 0.28 -0.1 1,952,847 - A4249_RS09795 0.40 -0.5 1,952,966 + A4249_RS09795 0.58 -0.5 1,953,008 + A4249_RS09795 0.65 +0.2 1,953,008 + A4249_RS09795 0.65 -0.2 1,953,008 + A4249_RS09795 0.65 -1.2 1,953,008 + A4249_RS09795 0.65 -0.1 1,953,009 - A4249_RS09795 0.65 +0.0 1,953,009 - A4249_RS09795 0.65 +0.4 1,953,009 - A4249_RS09795 0.65 -0.1 1,953,009 - A4249_RS09795 0.65 -0.1 1,953,009 - A4249_RS09795 0.65 +0.1 1,953,009 - A4249_RS09795 0.65 -0.9 1,953,020 + A4249_RS09795 0.67 -0.7 1,953,020 + A4249_RS09795 0.67 -0.3 1,953,020 + A4249_RS09795 0.67 -0.7 1,953,020 + A4249_RS09795 0.67 +0.2 1,953,020 + A4249_RS09795 0.67 -0.5 1,953,020 + A4249_RS09795 0.67 -1.4 1,953,021 - A4249_RS09795 0.67 +0.1 1,953,021 - A4249_RS09795 0.67 -0.3 1,953,021 - A4249_RS09795 0.67 -0.2 1,953,117 + A4249_RS09795 0.82 +0.1 1,953,117 + A4249_RS09795 0.82 -0.6 1,953,117 + A4249_RS09795 0.82 +0.3 1,953,117 + A4249_RS09795 0.82 -0.8 1,953,117 + A4249_RS09795 0.82 -0.2 1,953,118 - A4249_RS09795 0.82 -0.5 1,953,118 - A4249_RS09795 0.82 -0.9 1,953,118 - A4249_RS09795 0.82 -1.0 1,953,118 - A4249_RS09795 0.82 -0.2 1,953,118 - A4249_RS09795 0.82 -0.5 1,953,213 + +0.4 1,953,214 - -0.6 1,953,434 + A4249_RS09800 0.69 +0.7 1,953,434 + A4249_RS09800 0.69 +0.0 1,953,434 + A4249_RS09800 0.69 -0.3 1,953,434 + A4249_RS09800 0.69 -1.2 1,953,434 + A4249_RS09800 0.69 +0.3 1,953,434 + A4249_RS09800 0.69 -1.0 1,953,435 - A4249_RS09800 0.70 +0.6 1,953,435 - A4249_RS09800 0.70 +0.8 1,953,435 - A4249_RS09800 0.70 +0.0 1,953,435 - A4249_RS09800 0.70 +0.4 1,953,533 + +1.0 1,953,533 + -0.7 1,953,533 + +0.9 1,953,533 + -0.1 1,953,533 + +0.8 1,953,533 + -1.6 1,953,534 - +0.7 1,953,534 - -0.2 1,953,534 - -0.3 1,953,534 - +0.4 1,953,535 + -1.5 1,953,535 + +0.4 1,953,535 + -0.3 1,953,535 + +0.4 1,953,535 + +0.9 1,953,535 + -0.0 1,953,535 + -0.2 1,953,535 + +0.5 1,953,536 - -0.4 1,953,536 - +0.0 1,953,536 - -0.4 1,953,536 - +0.0 1,953,536 - +0.0 1,953,536 - +0.5 1,953,536 - -0.5 1,953,536 - -0.7 1,953,555 + +0.0 1,953,555 + -0.1 1,953,555 + -0.4 1,953,556 - +0.3 1,953,556 - -0.9 1,953,556 - -0.4 1,953,559 + -0.1 1,953,559 + -0.8 1,953,559 + -0.1 1,953,559 + +0.6 1,953,560 - -0.4 1,953,560 - -0.1 1,953,560 - +0.0 1,953,560 - -0.7 1,953,560 - -0.1 1,953,560 - +0.5 1,953,625 + A4249_RS09805 0.12 +0.2 1,953,625 + A4249_RS09805 0.12 +0.9 1,953,625 + A4249_RS09805 0.12 +1.7 1,953,625 + A4249_RS09805 0.12 +0.1 1,953,626 - A4249_RS09805 0.12 +0.2 1,953,626 - A4249_RS09805 0.12 -0.4 1,953,626 - A4249_RS09805 0.12 +0.4 1,953,626 - A4249_RS09805 0.12 +0.3 1,953,667 + A4249_RS09805 0.22 -0.6 1,953,667 + A4249_RS09805 0.22 -0.3 1,953,667 + A4249_RS09805 0.22 -0.7 1,953,667 + A4249_RS09805 0.22 -0.9 1,953,667 + A4249_RS09805 0.22 -0.5 1,953,668 - A4249_RS09805 0.22 +0.9 1,953,668 - A4249_RS09805 0.22 -0.2 1,953,668 - A4249_RS09805 0.22 -0.3 1,953,726 + A4249_RS09805 0.35 +0.0 1,953,726 + A4249_RS09805 0.35 -0.0 1,953,726 + A4249_RS09805 0.35 -1.2 1,953,726 + A4249_RS09805 0.35 -0.5 1,953,726 + A4249_RS09805 0.35 +0.0 1,953,726 + A4249_RS09805 0.35 -0.7 1,953,726 + A4249_RS09805 0.35 -0.4 1,953,726 + A4249_RS09805 0.35 -0.4 1,953,727 - A4249_RS09805 0.35 +0.1 1,953,727 - A4249_RS09805 0.35 +0.0 1,953,727 - A4249_RS09805 0.35 -0.3 1,953,727 - A4249_RS09805 0.35 -1.4 1,953,727 - A4249_RS09805 0.35 -0.6 1,953,727 - A4249_RS09805 0.35 -0.3 1,953,727 - A4249_RS09805 0.35 -1.0 1,953,727 - A4249_RS09805 0.35 +0.2 1,953,727 - A4249_RS09805 0.35 +0.1 1,953,727 - A4249_RS09805 0.35 -0.0 1,953,865 + A4249_RS09805 0.67 +1.2 1,953,865 + A4249_RS09805 0.67 +0.6 1,953,866 - A4249_RS09805 0.68 -0.4 1,953,866 - A4249_RS09805 0.68 -0.0 1,954,026 + -0.2 1,954,026 + -0.6 1,954,026 + +0.7 1,954,027 - +0.2 1,954,027 - -0.3 1,954,027 - +0.7 1,954,027 - +0.2 1,954,068 + +0.1 1,954,068 + +0.0 1,954,068 + -0.1 1,954,068 + -0.1 1,954,068 + -0.2 1,954,069 - +0.6 1,954,069 - -0.2 1,954,069 - +0.4 1,954,069 - -0.3 1,954,069 - -0.2 1,954,069 - -0.0 1,954,069 - -1.2 1,954,069 - -0.2 1,954,069 - -0.4 1,954,069 - +0.0 1,954,069 - +1.8 1,954,069 - -0.3 1,954,176 + A4249_RS09810 0.13 +0.1 1,954,176 + A4249_RS09810 0.13 -0.2 1,954,176 + A4249_RS09810 0.13 +0.0 1,954,176 + A4249_RS09810 0.13 -0.6 1,954,177 - A4249_RS09810 0.13 +0.5 1,954,177 - A4249_RS09810 0.13 -0.2 1,954,182 + A4249_RS09810 0.13 +0.8 1,954,182 + A4249_RS09810 0.13 +0.2 1,954,182 + A4249_RS09810 0.13 +0.0 1,954,182 + A4249_RS09810 0.13 +0.1 1,954,182 + A4249_RS09810 0.13 -1.5 1,954,182 + A4249_RS09810 0.13 +0.4 1,954,182 + A4249_RS09810 0.13 +0.6 1,954,182 + A4249_RS09810 0.13 +0.0 1,954,182 + A4249_RS09810 0.13 +1.1 1,954,182 + A4249_RS09810 0.13 +0.4 1,954,183 - A4249_RS09810 0.13 -2.2 1,954,183 - A4249_RS09810 0.13 -1.4 1,954,183 - A4249_RS09810 0.13 +0.2 1,954,183 - A4249_RS09810 0.13 -0.2 1,954,183 - A4249_RS09810 0.13 -0.1 1,954,183 - A4249_RS09810 0.13 +0.7 1,954,183 - A4249_RS09810 0.13 +1.1 1,954,183 - A4249_RS09810 0.13 +0.5 1,954,183 - A4249_RS09810 0.13 -0.7
Or see this region's nucleotide sequence