Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06525

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06520 and A4249_RS06525 are separated by 105 nucleotidesA4249_RS06525 and A4249_RS06530 are separated by 86 nucleotidesA4249_RS06530 and A4249_RS06535 are separated by 72 nucleotides A4249_RS06520: A4249_RS06520 - acyl-CoA dehydrogenase family protein, at 1,328,466 to 1,329,692 _RS06520 A4249_RS06525: A4249_RS06525 - SCP2 sterol-binding domain-containing protein, at 1,329,798 to 1,330,103 _RS06525 A4249_RS06530: A4249_RS06530 - PQ-loop domain-containing transporter, at 1,330,190 to 1,330,474 _RS06530 A4249_RS06535: A4249_RS06535 - amidase, at 1,330,547 to 1,332,040 _RS06535 Position (kb) 1329 1330 1331Strain fitness (log2 ratio) -3 -2 -1 0 1at 1328.884 kb on - strand, within A4249_RS06520at 1328.884 kb on - strand, within A4249_RS06520at 1328.884 kb on - strand, within A4249_RS06520at 1328.906 kb on + strand, within A4249_RS06520at 1328.907 kb on - strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.208 kb on + strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.209 kb on - strand, within A4249_RS06520at 1329.352 kb on + strand, within A4249_RS06520at 1329.352 kb on + strand, within A4249_RS06520at 1329.352 kb on + strand, within A4249_RS06520at 1329.353 kb on - strand, within A4249_RS06520at 1329.353 kb on - strand, within A4249_RS06520at 1329.353 kb on - strand, within A4249_RS06520at 1329.353 kb on - strand, within A4249_RS06520at 1329.353 kb on - strand, within A4249_RS06520at 1329.353 kb on - strand, within A4249_RS06520at 1329.353 kb on - strand, within A4249_RS06520at 1329.353 kb on - strand, within A4249_RS06520at 1329.353 kb on - strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.356 kb on + strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.357 kb on - strand, within A4249_RS06520at 1329.372 kb on - strand, within A4249_RS06520at 1329.451 kb on + strand, within A4249_RS06520at 1329.452 kb on - strand, within A4249_RS06520at 1329.452 kb on - strand, within A4249_RS06520at 1329.452 kb on - strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.512 kb on + strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.513 kb on - strand, within A4249_RS06520at 1329.601 kb on + strandat 1329.601 kb on + strandat 1329.776 kb on + strandat 1329.777 kb on - strandat 1329.997 kb on + strand, within A4249_RS06525at 1329.997 kb on + strand, within A4249_RS06525at 1329.998 kb on - strand, within A4249_RS06525at 1329.998 kb on - strand, within A4249_RS06525at 1329.998 kb on - strand, within A4249_RS06525at 1329.998 kb on - strand, within A4249_RS06525at 1330.136 kb on - strandat 1330.136 kb on - strandat 1330.136 kb on - strandat 1330.136 kb on - strandat 1330.311 kb on + strand, within A4249_RS06530at 1330.311 kb on + strand, within A4249_RS06530at 1330.311 kb on + strand, within A4249_RS06530at 1330.311 kb on + strand, within A4249_RS06530at 1330.311 kb on + strand, within A4249_RS06530at 1330.311 kb on + strand, within A4249_RS06530at 1330.312 kb on - strand, within A4249_RS06530at 1330.312 kb on - strand, within A4249_RS06530at 1330.312 kb on - strand, within A4249_RS06530at 1330.312 kb on - strand, within A4249_RS06530at 1330.350 kb on + strand, within A4249_RS06530at 1330.350 kb on + strand, within A4249_RS06530at 1330.350 kb on + strand, within A4249_RS06530at 1330.350 kb on + strand, within A4249_RS06530at 1330.350 kb on + strand, within A4249_RS06530at 1330.350 kb on + strand, within A4249_RS06530at 1330.350 kb on + strand, within A4249_RS06530at 1330.351 kb on - strand, within A4249_RS06530at 1330.351 kb on - strand, within A4249_RS06530at 1330.351 kb on - strand, within A4249_RS06530at 1330.453 kb on + strandat 1330.454 kb on - strandat 1330.503 kb on + strandat 1330.504 kb on - strandat 1330.504 kb on - strandat 1330.504 kb on - strandat 1330.603 kb on - strandat 1330.744 kb on + strand, within A4249_RS06535at 1330.744 kb on + strand, within A4249_RS06535at 1330.744 kb on + strand, within A4249_RS06535at 1330.744 kb on + strand, within A4249_RS06535at 1330.744 kb on + strand, within A4249_RS06535at 1330.744 kb on + strand, within A4249_RS06535at 1330.745 kb on - strand, within A4249_RS06535at 1330.745 kb on - strand, within A4249_RS06535at 1330.858 kb on + strand, within A4249_RS06535at 1330.858 kb on + strand, within A4249_RS06535at 1330.859 kb on - strand, within A4249_RS06535at 1330.859 kb on - strand, within A4249_RS06535at 1330.859 kb on - strand, within A4249_RS06535at 1330.884 kb on + strand, within A4249_RS06535at 1330.884 kb on + strand, within A4249_RS06535at 1330.884 kb on + strand, within A4249_RS06535at 1330.885 kb on - strand, within A4249_RS06535at 1330.885 kb on - strand, within A4249_RS06535at 1330.885 kb on - strand, within A4249_RS06535at 1331.034 kb on + strand, within A4249_RS06535at 1331.034 kb on + strand, within A4249_RS06535at 1331.035 kb on - strand, within A4249_RS06535at 1331.035 kb on - strand, within A4249_RS06535at 1331.061 kb on + strand, within A4249_RS06535at 1331.061 kb on + strand, within A4249_RS06535at 1331.061 kb on + strand, within A4249_RS06535at 1331.062 kb on - strand, within A4249_RS06535at 1331.062 kb on - strand, within A4249_RS06535at 1331.062 kb on - strand, within A4249_RS06535at 1331.090 kb on + strand, within A4249_RS06535at 1331.091 kb on - strand, within A4249_RS06535at 1331.091 kb on - strand, within A4249_RS06535at 1331.091 kb on - strand, within A4249_RS06535

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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1,328,884 - A4249_RS06520 0.34 -0.6
1,328,884 - A4249_RS06520 0.34 +1.4
1,328,884 - A4249_RS06520 0.34 -0.3
1,328,906 + A4249_RS06520 0.36 -0.6
1,328,907 - A4249_RS06520 0.36 -0.4
1,329,208 + A4249_RS06520 0.60 +0.1
1,329,208 + A4249_RS06520 0.60 -0.1
1,329,208 + A4249_RS06520 0.60 +0.1
1,329,208 + A4249_RS06520 0.60 -0.4
1,329,208 + A4249_RS06520 0.60 -0.7
1,329,208 + A4249_RS06520 0.60 +0.2
1,329,208 + A4249_RS06520 0.60 -0.2
1,329,208 + A4249_RS06520 0.60 -0.7
1,329,208 + A4249_RS06520 0.60 -0.2
1,329,208 + A4249_RS06520 0.60 +0.2
1,329,208 + A4249_RS06520 0.60 -0.5
1,329,208 + A4249_RS06520 0.60 +0.2
1,329,209 - A4249_RS06520 0.61 -0.2
1,329,209 - A4249_RS06520 0.61 +0.1
1,329,209 - A4249_RS06520 0.61 +0.8
1,329,209 - A4249_RS06520 0.61 -1.6
1,329,209 - A4249_RS06520 0.61 -0.1
1,329,209 - A4249_RS06520 0.61 +0.6
1,329,209 - A4249_RS06520 0.61 +0.0
1,329,209 - A4249_RS06520 0.61 -0.8
1,329,209 - A4249_RS06520 0.61 -0.2
1,329,209 - A4249_RS06520 0.61 -0.7
1,329,209 - A4249_RS06520 0.61 -0.2
1,329,209 - A4249_RS06520 0.61 -0.3
1,329,209 - A4249_RS06520 0.61 -0.6
1,329,352 + A4249_RS06520 0.72 +0.4
1,329,352 + A4249_RS06520 0.72 -0.1
1,329,352 + A4249_RS06520 0.72 -1.2
1,329,353 - A4249_RS06520 0.72 +0.3
1,329,353 - A4249_RS06520 0.72 -0.6
1,329,353 - A4249_RS06520 0.72 -0.5
1,329,353 - A4249_RS06520 0.72 -1.0
1,329,353 - A4249_RS06520 0.72 -0.1
1,329,353 - A4249_RS06520 0.72 -0.9
1,329,353 - A4249_RS06520 0.72 -0.6
1,329,353 - A4249_RS06520 0.72 -0.0
1,329,353 - A4249_RS06520 0.72 -2.4
1,329,356 + A4249_RS06520 0.73 -0.2
1,329,356 + A4249_RS06520 0.73 +0.2
1,329,356 + A4249_RS06520 0.73 -0.3
1,329,356 + A4249_RS06520 0.73 +0.7
1,329,356 + A4249_RS06520 0.73 +0.0
1,329,356 + A4249_RS06520 0.73 +0.0
1,329,356 + A4249_RS06520 0.73 -0.4
1,329,356 + A4249_RS06520 0.73 +0.7
1,329,356 + A4249_RS06520 0.73 -0.6
1,329,356 + A4249_RS06520 0.73 +0.0
1,329,356 + A4249_RS06520 0.73 +1.2
1,329,356 + A4249_RS06520 0.73 -0.2
1,329,356 + A4249_RS06520 0.73 -0.5
1,329,356 + A4249_RS06520 0.73 -0.4
1,329,357 - A4249_RS06520 0.73 -0.2
1,329,357 - A4249_RS06520 0.73 -0.3
1,329,357 - A4249_RS06520 0.73 -0.2
1,329,357 - A4249_RS06520 0.73 -1.5
1,329,357 - A4249_RS06520 0.73 -0.4
1,329,357 - A4249_RS06520 0.73 -0.7
1,329,357 - A4249_RS06520 0.73 -0.1
1,329,357 - A4249_RS06520 0.73 +0.3
1,329,357 - A4249_RS06520 0.73 -0.2
1,329,357 - A4249_RS06520 0.73 -0.7
1,329,357 - A4249_RS06520 0.73 -1.0
1,329,357 - A4249_RS06520 0.73 -0.2
1,329,372 - A4249_RS06520 0.74 -0.1
1,329,451 + A4249_RS06520 0.80 -0.0
1,329,452 - A4249_RS06520 0.80 -0.3
1,329,452 - A4249_RS06520 0.80 -0.3
1,329,452 - A4249_RS06520 0.80 -0.1
1,329,512 + A4249_RS06520 0.85 +0.2
1,329,512 + A4249_RS06520 0.85 -0.9
1,329,512 + A4249_RS06520 0.85 -0.0
1,329,512 + A4249_RS06520 0.85 -3.4
1,329,512 + A4249_RS06520 0.85 -0.3
1,329,512 + A4249_RS06520 0.85 +0.6
1,329,512 + A4249_RS06520 0.85 -0.0
1,329,512 + A4249_RS06520 0.85 -0.2
1,329,512 + A4249_RS06520 0.85 +0.6
1,329,512 + A4249_RS06520 0.85 -0.4
1,329,512 + A4249_RS06520 0.85 +0.1
1,329,512 + A4249_RS06520 0.85 -0.7
1,329,512 + A4249_RS06520 0.85 -1.1
1,329,513 - A4249_RS06520 0.85 +0.2
1,329,513 - A4249_RS06520 0.85 -0.4
1,329,513 - A4249_RS06520 0.85 -0.3
1,329,513 - A4249_RS06520 0.85 +0.2
1,329,513 - A4249_RS06520 0.85 -0.9
1,329,513 - A4249_RS06520 0.85 +0.2
1,329,513 - A4249_RS06520 0.85 +0.2
1,329,513 - A4249_RS06520 0.85 +0.3
1,329,513 - A4249_RS06520 0.85 +0.1
1,329,513 - A4249_RS06520 0.85 +0.7
1,329,513 - A4249_RS06520 0.85 -0.1
1,329,513 - A4249_RS06520 0.85 -0.4
1,329,513 - A4249_RS06520 0.85 +0.1
1,329,513 - A4249_RS06520 0.85 +0.5
1,329,513 - A4249_RS06520 0.85 -0.7
1,329,513 - A4249_RS06520 0.85 -0.4
1,329,601 + -0.8
1,329,601 + +0.2
1,329,776 + +0.3
1,329,777 - -0.3
1,329,997 + A4249_RS06525 0.65 +1.6
1,329,997 + A4249_RS06525 0.65 -0.4
1,329,998 - A4249_RS06525 0.65 -0.0
1,329,998 - A4249_RS06525 0.65 -0.4
1,329,998 - A4249_RS06525 0.65 -1.0
1,329,998 - A4249_RS06525 0.65 -0.0
1,330,136 - -0.2
1,330,136 - -0.1
1,330,136 - +0.0
1,330,136 - -1.0
1,330,311 + A4249_RS06530 0.42 +0.2
1,330,311 + A4249_RS06530 0.42 -0.5
1,330,311 + A4249_RS06530 0.42 +0.6
1,330,311 + A4249_RS06530 0.42 -0.8
1,330,311 + A4249_RS06530 0.42 -0.9
1,330,311 + A4249_RS06530 0.42 -0.6
1,330,312 - A4249_RS06530 0.43 -0.3
1,330,312 - A4249_RS06530 0.43 +0.8
1,330,312 - A4249_RS06530 0.43 -0.3
1,330,312 - A4249_RS06530 0.43 -0.0
1,330,350 + A4249_RS06530 0.56 -0.1
1,330,350 + A4249_RS06530 0.56 +0.2
1,330,350 + A4249_RS06530 0.56 -1.2
1,330,350 + A4249_RS06530 0.56 -0.1
1,330,350 + A4249_RS06530 0.56 -0.0
1,330,350 + A4249_RS06530 0.56 -0.8
1,330,350 + A4249_RS06530 0.56 +0.3
1,330,351 - A4249_RS06530 0.56 +0.0
1,330,351 - A4249_RS06530 0.56 -0.3
1,330,351 - A4249_RS06530 0.56 -0.1
1,330,453 + -0.3
1,330,454 - -0.1
1,330,503 + -0.5
1,330,504 - +1.4
1,330,504 - +0.0
1,330,504 - -0.4
1,330,603 - -1.5
1,330,744 + A4249_RS06535 0.13 -0.6
1,330,744 + A4249_RS06535 0.13 +0.1
1,330,744 + A4249_RS06535 0.13 -0.0
1,330,744 + A4249_RS06535 0.13 +1.1
1,330,744 + A4249_RS06535 0.13 -1.1
1,330,744 + A4249_RS06535 0.13 +0.4
1,330,745 - A4249_RS06535 0.13 -0.4
1,330,745 - A4249_RS06535 0.13 -0.1
1,330,858 + A4249_RS06535 0.21 -0.0
1,330,858 + A4249_RS06535 0.21 -0.0
1,330,859 - A4249_RS06535 0.21 -1.2
1,330,859 - A4249_RS06535 0.21 +0.1
1,330,859 - A4249_RS06535 0.21 -0.2
1,330,884 + A4249_RS06535 0.23 -0.7
1,330,884 + A4249_RS06535 0.23 -0.2
1,330,884 + A4249_RS06535 0.23 +0.4
1,330,885 - A4249_RS06535 0.23 +0.6
1,330,885 - A4249_RS06535 0.23 -0.5
1,330,885 - A4249_RS06535 0.23 -0.3
1,331,034 + A4249_RS06535 0.33 +1.4
1,331,034 + A4249_RS06535 0.33 +1.6
1,331,035 - A4249_RS06535 0.33 +0.1
1,331,035 - A4249_RS06535 0.33 -0.0
1,331,061 + A4249_RS06535 0.34 +0.8
1,331,061 + A4249_RS06535 0.34 -0.7
1,331,061 + A4249_RS06535 0.34 +0.8
1,331,062 - A4249_RS06535 0.34 +0.4
1,331,062 - A4249_RS06535 0.34 +0.1
1,331,062 - A4249_RS06535 0.34 +1.4
1,331,090 + A4249_RS06535 0.36 -0.4
1,331,091 - A4249_RS06535 0.36 -0.4
1,331,091 - A4249_RS06535 0.36 -0.6
1,331,091 - A4249_RS06535 0.36 -0.4

Or see this region's nucleotide sequence