Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04755

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04745 and A4249_RS04750 overlap by 4 nucleotidesA4249_RS04750 and A4249_RS04755 overlap by 1 nucleotidesA4249_RS04755 and A4249_RS04760 overlap by 4 nucleotidesA4249_RS04760 and A4249_RS04765 overlap by 4 nucleotides A4249_RS04745: A4249_RS04745 - dTMP kinase, at 985,971 to 986,603 _RS04745 A4249_RS04750: A4249_RS04750 - DNA polymerase III subunit delta', at 986,600 to 987,589 _RS04750 A4249_RS04755: A4249_RS04755 - TatD family hydrolase, at 987,589 to 988,371 _RS04755 A4249_RS04760: A4249_RS04760 - MBL fold metallo-hydrolase, at 988,368 to 989,162 _RS04760 A4249_RS04765: A4249_RS04765 - ATP-dependent DNA helicase RecG, at 989,159 to 991,246 _RS04765 Position (kb) 987 988 989Strain fitness (log2 ratio) -1 0 1at 987.762 kb on + strand, within A4249_RS04755at 987.762 kb on + strand, within A4249_RS04755at 987.762 kb on + strand, within A4249_RS04755at 987.762 kb on + strand, within A4249_RS04755at 987.763 kb on - strand, within A4249_RS04755at 987.763 kb on - strand, within A4249_RS04755at 987.973 kb on - strand, within A4249_RS04755at 988.056 kb on + strand, within A4249_RS04755at 988.207 kb on + strand, within A4249_RS04755at 988.207 kb on + strand, within A4249_RS04755at 988.207 kb on + strand, within A4249_RS04755at 988.208 kb on - strand, within A4249_RS04755at 988.208 kb on - strand, within A4249_RS04755at 988.252 kb on + strand, within A4249_RS04755at 988.253 kb on - strand, within A4249_RS04755at 988.253 kb on - strand, within A4249_RS04755at 988.253 kb on - strand, within A4249_RS04755at 988.253 kb on - strand, within A4249_RS04755at 988.253 kb on - strand, within A4249_RS04755at 988.321 kb on - strandat 988.355 kb on + strandat 988.599 kb on + strand, within A4249_RS04760at 988.599 kb on + strand, within A4249_RS04760at 988.599 kb on + strand, within A4249_RS04760at 988.599 kb on + strand, within A4249_RS04760at 988.599 kb on + strand, within A4249_RS04760at 988.599 kb on + strand, within A4249_RS04760at 988.600 kb on - strand, within A4249_RS04760at 988.600 kb on - strand, within A4249_RS04760at 988.600 kb on - strand, within A4249_RS04760at 988.600 kb on - strand, within A4249_RS04760at 988.600 kb on - strand, within A4249_RS04760at 988.600 kb on - strand, within A4249_RS04760at 988.600 kb on - strand, within A4249_RS04760at 988.600 kb on - strand, within A4249_RS04760at 988.728 kb on + strand, within A4249_RS04760at 988.728 kb on + strand, within A4249_RS04760at 988.728 kb on + strand, within A4249_RS04760at 988.728 kb on + strand, within A4249_RS04760at 988.729 kb on - strand, within A4249_RS04760at 988.729 kb on - strand, within A4249_RS04760at 988.729 kb on - strand, within A4249_RS04760at 988.729 kb on - strand, within A4249_RS04760at 988.729 kb on - strand, within A4249_RS04760at 988.729 kb on - strand, within A4249_RS04760at 988.899 kb on + strand, within A4249_RS04760at 988.900 kb on - strand, within A4249_RS04760at 988.983 kb on + strand, within A4249_RS04760at 988.984 kb on - strand, within A4249_RS04760at 989.048 kb on - strand, within A4249_RS04760at 989.048 kb on - strand, within A4249_RS04760at 989.160 kb on + strandat 989.196 kb on - strandat 989.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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987,762 + A4249_RS04755 0.22 -0.3
987,762 + A4249_RS04755 0.22 -0.6
987,762 + A4249_RS04755 0.22 -0.0
987,762 + A4249_RS04755 0.22 -0.0
987,763 - A4249_RS04755 0.22 -0.8
987,763 - A4249_RS04755 0.22 -1.0
987,973 - A4249_RS04755 0.49 -1.7
988,056 + A4249_RS04755 0.60 -0.8
988,207 + A4249_RS04755 0.79 +1.0
988,207 + A4249_RS04755 0.79 +0.0
988,207 + A4249_RS04755 0.79 +0.1
988,208 - A4249_RS04755 0.79 +0.5
988,208 - A4249_RS04755 0.79 -0.9
988,252 + A4249_RS04755 0.85 -0.0
988,253 - A4249_RS04755 0.85 +0.9
988,253 - A4249_RS04755 0.85 -0.3
988,253 - A4249_RS04755 0.85 -0.4
988,253 - A4249_RS04755 0.85 +0.3
988,253 - A4249_RS04755 0.85 +0.4
988,321 - +0.4
988,355 + +0.2
988,599 + A4249_RS04760 0.29 +0.9
988,599 + A4249_RS04760 0.29 +0.0
988,599 + A4249_RS04760 0.29 +0.1
988,599 + A4249_RS04760 0.29 +0.5
988,599 + A4249_RS04760 0.29 +0.0
988,599 + A4249_RS04760 0.29 +0.0
988,600 - A4249_RS04760 0.29 +0.1
988,600 - A4249_RS04760 0.29 +0.7
988,600 - A4249_RS04760 0.29 -1.0
988,600 - A4249_RS04760 0.29 +0.0
988,600 - A4249_RS04760 0.29 -0.3
988,600 - A4249_RS04760 0.29 -0.4
988,600 - A4249_RS04760 0.29 +0.6
988,600 - A4249_RS04760 0.29 -0.5
988,728 + A4249_RS04760 0.45 +0.1
988,728 + A4249_RS04760 0.45 -0.3
988,728 + A4249_RS04760 0.45 -0.1
988,728 + A4249_RS04760 0.45 +0.2
988,729 - A4249_RS04760 0.45 -0.5
988,729 - A4249_RS04760 0.45 +0.1
988,729 - A4249_RS04760 0.45 -0.4
988,729 - A4249_RS04760 0.45 -0.6
988,729 - A4249_RS04760 0.45 -0.7
988,729 - A4249_RS04760 0.45 +0.1
988,899 + A4249_RS04760 0.67 -0.1
988,900 - A4249_RS04760 0.67 -0.4
988,983 + A4249_RS04760 0.77 +0.3
988,984 - A4249_RS04760 0.77 -0.0
989,048 - A4249_RS04760 0.86 -0.0
989,048 - A4249_RS04760 0.86 -0.3
989,160 + +0.1
989,196 - -0.6
989,326 - -0.3

Or see this region's nucleotide sequence