Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04095

Experiment: Cytosine 0.9 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS04090 and A4249_RS04095 are separated by 39 nucleotidesA4249_RS04095 and A4249_RS04100 are separated by 4 nucleotidesA4249_RS04100 and A4249_RS04105 are separated by 45 nucleotides A4249_RS04090: A4249_RS04090 - N-acetylmuramoyl-L-alanine amidase, at 850,580 to 851,755 _RS04090 A4249_RS04095: A4249_RS04095 - SDR family oxidoreductase, at 851,795 to 852,472 _RS04095 A4249_RS04100: A4249_RS04100 - J domain-containing protein, at 852,477 to 853,145 _RS04100 A4249_RS04105: A4249_RS04105 - BolA family transcriptional regulator, at 853,191 to 853,487 _RS04105 Position (kb) 851 852 853Strain fitness (log2 ratio) -1 0 1 2at 850.838 kb on + strand, within A4249_RS04090at 850.838 kb on + strand, within A4249_RS04090at 850.838 kb on + strand, within A4249_RS04090at 850.838 kb on + strand, within A4249_RS04090at 850.838 kb on + strand, within A4249_RS04090at 850.839 kb on - strand, within A4249_RS04090at 850.839 kb on - strand, within A4249_RS04090at 850.839 kb on - strand, within A4249_RS04090at 850.839 kb on - strand, within A4249_RS04090at 850.839 kb on - strand, within A4249_RS04090at 850.946 kb on + strand, within A4249_RS04090at 850.952 kb on + strand, within A4249_RS04090at 850.952 kb on + strand, within A4249_RS04090at 850.952 kb on + strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 850.953 kb on - strand, within A4249_RS04090at 851.207 kb on + strand, within A4249_RS04090at 851.207 kb on + strand, within A4249_RS04090at 851.207 kb on + strand, within A4249_RS04090at 851.220 kb on - strand, within A4249_RS04090at 851.318 kb on + strand, within A4249_RS04090at 851.318 kb on + strand, within A4249_RS04090at 851.318 kb on + strand, within A4249_RS04090at 851.318 kb on + strand, within A4249_RS04090at 851.318 kb on + strand, within A4249_RS04090at 851.318 kb on + strand, within A4249_RS04090at 851.319 kb on - strand, within A4249_RS04090at 851.319 kb on - strand, within A4249_RS04090at 851.319 kb on - strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.320 kb on + strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.321 kb on - strand, within A4249_RS04090at 851.491 kb on - strand, within A4249_RS04090at 851.690 kb on + strandat 851.691 kb on - strandat 851.848 kb on + strandat 851.849 kb on - strandat 851.849 kb on - strandat 851.920 kb on + strand, within A4249_RS04095at 851.920 kb on + strand, within A4249_RS04095at 851.920 kb on + strand, within A4249_RS04095at 851.921 kb on - strand, within A4249_RS04095at 852.200 kb on + strand, within A4249_RS04095at 852.200 kb on + strand, within A4249_RS04095at 852.200 kb on + strand, within A4249_RS04095at 852.200 kb on + strand, within A4249_RS04095at 852.201 kb on - strand, within A4249_RS04095at 852.201 kb on - strand, within A4249_RS04095at 852.201 kb on - strand, within A4249_RS04095at 852.201 kb on - strand, within A4249_RS04095at 852.201 kb on - strand, within A4249_RS04095at 852.201 kb on - strand, within A4249_RS04095at 852.389 kb on + strand, within A4249_RS04095at 852.389 kb on + strand, within A4249_RS04095at 852.389 kb on + strand, within A4249_RS04095at 852.390 kb on - strand, within A4249_RS04095at 852.390 kb on - strand, within A4249_RS04095at 852.390 kb on - strand, within A4249_RS04095at 852.390 kb on - strand, within A4249_RS04095at 852.461 kb on + strandat 852.461 kb on + strandat 852.462 kb on - strandat 852.462 kb on - strandat 852.462 kb on - strandat 852.471 kb on - strandat 852.471 kb on - strandat 852.471 kb on - strandat 852.595 kb on + strand, within A4249_RS04100at 852.596 kb on - strand, within A4249_RS04100at 852.596 kb on - strand, within A4249_RS04100at 852.596 kb on - strand, within A4249_RS04100at 852.904 kb on + strand, within A4249_RS04100at 852.904 kb on + strand, within A4249_RS04100at 852.905 kb on - strand, within A4249_RS04100at 852.905 kb on - strand, within A4249_RS04100at 852.905 kb on - strand, within A4249_RS04100at 852.925 kb on + strand, within A4249_RS04100at 852.925 kb on + strand, within A4249_RS04100at 852.925 kb on + strand, within A4249_RS04100at 852.926 kb on - strand, within A4249_RS04100at 852.955 kb on + strand, within A4249_RS04100at 852.955 kb on + strand, within A4249_RS04100at 852.956 kb on - strand, within A4249_RS04100at 852.956 kb on - strand, within A4249_RS04100at 852.956 kb on - strand, within A4249_RS04100at 852.956 kb on - strand, within A4249_RS04100at 852.956 kb on - strand, within A4249_RS04100at 852.956 kb on - strand, within A4249_RS04100at 852.956 kb on - strand, within A4249_RS04100at 852.956 kb on - strand, within A4249_RS04100at 853.126 kb on + strandat 853.127 kb on - strandat 853.127 kb on - strandat 853.127 kb on - strandat 853.157 kb on + strandat 853.157 kb on + strandat 853.157 kb on + strandat 853.157 kb on + strandat 853.157 kb on + strandat 853.157 kb on + strandat 853.158 kb on - strandat 853.218 kb on - strandat 853.218 kb on - strandat 853.218 kb on - strandat 853.218 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
remove
850,838 + A4249_RS04090 0.22 -1.0
850,838 + A4249_RS04090 0.22 -0.2
850,838 + A4249_RS04090 0.22 +0.5
850,838 + A4249_RS04090 0.22 -0.1
850,838 + A4249_RS04090 0.22 -1.0
850,839 - A4249_RS04090 0.22 -0.5
850,839 - A4249_RS04090 0.22 +0.0
850,839 - A4249_RS04090 0.22 -0.4
850,839 - A4249_RS04090 0.22 -0.6
850,839 - A4249_RS04090 0.22 -0.0
850,946 + A4249_RS04090 0.31 +0.3
850,952 + A4249_RS04090 0.32 -0.1
850,952 + A4249_RS04090 0.32 -0.4
850,952 + A4249_RS04090 0.32 -0.4
850,953 - A4249_RS04090 0.32 -0.4
850,953 - A4249_RS04090 0.32 -0.1
850,953 - A4249_RS04090 0.32 +0.1
850,953 - A4249_RS04090 0.32 +0.0
850,953 - A4249_RS04090 0.32 +0.5
850,953 - A4249_RS04090 0.32 +0.2
850,953 - A4249_RS04090 0.32 -0.1
850,953 - A4249_RS04090 0.32 -0.5
850,953 - A4249_RS04090 0.32 -0.1
850,953 - A4249_RS04090 0.32 +0.1
850,953 - A4249_RS04090 0.32 -1.3
850,953 - A4249_RS04090 0.32 -0.3
851,207 + A4249_RS04090 0.53 -0.3
851,207 + A4249_RS04090 0.53 +0.3
851,207 + A4249_RS04090 0.53 -0.2
851,220 - A4249_RS04090 0.54 -0.5
851,318 + A4249_RS04090 0.63 -0.4
851,318 + A4249_RS04090 0.63 -0.1
851,318 + A4249_RS04090 0.63 -0.2
851,318 + A4249_RS04090 0.63 +0.2
851,318 + A4249_RS04090 0.63 -0.2
851,318 + A4249_RS04090 0.63 +0.3
851,319 - A4249_RS04090 0.63 -0.1
851,319 - A4249_RS04090 0.63 -0.7
851,319 - A4249_RS04090 0.63 -0.6
851,320 + A4249_RS04090 0.63 -0.5
851,320 + A4249_RS04090 0.63 +0.1
851,320 + A4249_RS04090 0.63 +1.1
851,320 + A4249_RS04090 0.63 -0.3
851,320 + A4249_RS04090 0.63 +0.1
851,320 + A4249_RS04090 0.63 -0.4
851,320 + A4249_RS04090 0.63 -0.1
851,320 + A4249_RS04090 0.63 +0.3
851,320 + A4249_RS04090 0.63 +0.1
851,320 + A4249_RS04090 0.63 +0.1
851,320 + A4249_RS04090 0.63 -0.6
851,320 + A4249_RS04090 0.63 +0.5
851,320 + A4249_RS04090 0.63 -0.2
851,321 - A4249_RS04090 0.63 +0.2
851,321 - A4249_RS04090 0.63 +0.7
851,321 - A4249_RS04090 0.63 -0.2
851,321 - A4249_RS04090 0.63 +0.0
851,321 - A4249_RS04090 0.63 +0.3
851,321 - A4249_RS04090 0.63 -0.1
851,321 - A4249_RS04090 0.63 +0.3
851,321 - A4249_RS04090 0.63 +0.5
851,321 - A4249_RS04090 0.63 -1.5
851,321 - A4249_RS04090 0.63 -0.4
851,321 - A4249_RS04090 0.63 -0.0
851,491 - A4249_RS04090 0.77 -0.5
851,690 + +1.2
851,691 - +0.5
851,848 + +0.4
851,849 - +0.1
851,849 - -0.3
851,920 + A4249_RS04095 0.18 -0.1
851,920 + A4249_RS04095 0.18 +0.9
851,920 + A4249_RS04095 0.18 +0.2
851,921 - A4249_RS04095 0.19 +0.3
852,200 + A4249_RS04095 0.60 +0.2
852,200 + A4249_RS04095 0.60 -0.3
852,200 + A4249_RS04095 0.60 -0.1
852,200 + A4249_RS04095 0.60 -1.0
852,201 - A4249_RS04095 0.60 -0.3
852,201 - A4249_RS04095 0.60 -0.2
852,201 - A4249_RS04095 0.60 -0.5
852,201 - A4249_RS04095 0.60 -0.1
852,201 - A4249_RS04095 0.60 -0.5
852,201 - A4249_RS04095 0.60 +0.1
852,389 + A4249_RS04095 0.88 -0.1
852,389 + A4249_RS04095 0.88 +0.3
852,389 + A4249_RS04095 0.88 -0.5
852,390 - A4249_RS04095 0.88 -0.5
852,390 - A4249_RS04095 0.88 +0.2
852,390 - A4249_RS04095 0.88 -0.5
852,390 - A4249_RS04095 0.88 +0.0
852,461 + -0.4
852,461 + +0.0
852,462 - -0.3
852,462 - +0.0
852,462 - +0.4
852,471 - -0.1
852,471 - +0.2
852,471 - +1.4
852,595 + A4249_RS04100 0.18 +1.1
852,596 - A4249_RS04100 0.18 +0.6
852,596 - A4249_RS04100 0.18 -0.0
852,596 - A4249_RS04100 0.18 -1.0
852,904 + A4249_RS04100 0.64 -1.0
852,904 + A4249_RS04100 0.64 -0.3
852,905 - A4249_RS04100 0.64 +0.1
852,905 - A4249_RS04100 0.64 -0.5
852,905 - A4249_RS04100 0.64 +0.2
852,925 + A4249_RS04100 0.67 -0.2
852,925 + A4249_RS04100 0.67 +0.7
852,925 + A4249_RS04100 0.67 +0.3
852,926 - A4249_RS04100 0.67 -0.0
852,955 + A4249_RS04100 0.71 -0.5
852,955 + A4249_RS04100 0.71 -0.4
852,956 - A4249_RS04100 0.72 -0.3
852,956 - A4249_RS04100 0.72 -0.4
852,956 - A4249_RS04100 0.72 +0.1
852,956 - A4249_RS04100 0.72 -0.8
852,956 - A4249_RS04100 0.72 +0.2
852,956 - A4249_RS04100 0.72 -0.1
852,956 - A4249_RS04100 0.72 +0.1
852,956 - A4249_RS04100 0.72 -0.3
853,126 + -0.0
853,127 - +0.2
853,127 - -0.0
853,127 - -0.1
853,157 + -0.2
853,157 + -0.2
853,157 + -0.4
853,157 + +0.1
853,157 + +0.4
853,157 + +0.8
853,158 - +0.3
853,218 - +0.7
853,218 - -0.2
853,218 - +2.1
853,218 - +0.6

Or see this region's nucleotide sequence