Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03430 and A4249_RS03435 are separated by 184 nucleotides A4249_RS03435 and A4249_RS03440 are separated by 9 nucleotides A4249_RS03440 and A4249_RS03445 overlap by 4 nucleotides A4249_RS03445 and A4249_RS03450 overlap by 8 nucleotides A4249_RS03450 and A4249_RS03455 are separated by 3 nucleotides
A4249_RS03430: A4249_RS03430 - exodeoxyribonuclease III, at 718,637 to 719,410
_RS03430
A4249_RS03435: A4249_RS03435 - plasmid stabilization protein, at 719,595 to 719,900
_RS03435
A4249_RS03440: A4249_RS03440 - hypothetical protein, at 719,910 to 720,122
_RS03440
A4249_RS03445: A4249_RS03445 - hypothetical protein, at 720,119 to 720,325
_RS03445
A4249_RS03450: A4249_RS03450 - ferritin-like domain-containing protein, at 720,318 to 720,818
_RS03450
A4249_RS03455: A4249_RS03455 - cysteine hydrolase, at 720,822 to 721,424
_RS03455
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 718.938 kb on + strand, within A4249_RS03430 at 718.938 kb on + strand, within A4249_RS03430 at 718.938 kb on + strand, within A4249_RS03430 at 718.938 kb on + strand, within A4249_RS03430 at 718.938 kb on + strand, within A4249_RS03430 at 718.938 kb on + strand, within A4249_RS03430 at 718.938 kb on + strand, within A4249_RS03430 at 718.938 kb on + strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 718.939 kb on - strand, within A4249_RS03430 at 719.052 kb on + strand, within A4249_RS03430 at 719.052 kb on + strand, within A4249_RS03430 at 719.053 kb on - strand, within A4249_RS03430 at 719.053 kb on - strand, within A4249_RS03430 at 719.053 kb on - strand, within A4249_RS03430 at 719.094 kb on + strand, within A4249_RS03430 at 719.094 kb on + strand, within A4249_RS03430 at 719.094 kb on + strand, within A4249_RS03430 at 719.095 kb on - strand, within A4249_RS03430 at 719.136 kb on + strand, within A4249_RS03430 at 719.136 kb on + strand, within A4249_RS03430 at 719.137 kb on - strand, within A4249_RS03430 at 719.137 kb on - strand, within A4249_RS03430 at 719.137 kb on - strand, within A4249_RS03430 at 719.445 kb on + strand at 719.445 kb on + strand at 719.445 kb on + strand at 719.445 kb on + strand at 719.446 kb on - strand at 719.446 kb on - strand at 719.446 kb on - strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.528 kb on + strand at 719.529 kb on - strand at 719.529 kb on - strand at 719.529 kb on - strand at 719.529 kb on - strand at 719.529 kb on - strand at 719.529 kb on - strand at 719.529 kb on - strand at 719.529 kb on - strand at 719.529 kb on - strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.530 kb on + strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.531 kb on - strand at 719.534 kb on + strand at 719.534 kb on + strand at 719.534 kb on + strand at 719.534 kb on + strand at 719.534 kb on + strand at 719.534 kb on + strand at 719.534 kb on + strand at 719.534 kb on + strand at 719.534 kb on + strand at 719.534 kb on + strand at 719.535 kb on - strand at 719.535 kb on - strand at 719.535 kb on - strand at 719.535 kb on - strand at 719.535 kb on - strand at 719.535 kb on - strand at 719.535 kb on - strand at 719.535 kb on - strand at 719.535 kb on - strand at 719.600 kb on + strand at 719.600 kb on + strand at 719.600 kb on + strand at 719.619 kb on + strand at 719.621 kb on + strand at 719.621 kb on + strand at 719.622 kb on - strand at 719.664 kb on + strand, within A4249_RS03435 at 719.680 kb on + strand, within A4249_RS03435 at 719.919 kb on + strand at 719.919 kb on + strand at 719.919 kb on + strand at 719.919 kb on + strand at 719.919 kb on + strand at 719.920 kb on - strand at 719.920 kb on - strand at 719.920 kb on - strand at 720.034 kb on + strand, within A4249_RS03440 at 720.034 kb on + strand, within A4249_RS03440 at 720.034 kb on + strand, within A4249_RS03440 at 720.035 kb on - strand, within A4249_RS03440 at 720.035 kb on - strand, within A4249_RS03440 at 720.035 kb on - strand, within A4249_RS03440 at 720.063 kb on + strand, within A4249_RS03440 at 720.348 kb on + strand at 720.348 kb on + strand at 720.348 kb on + strand at 720.348 kb on + strand at 720.348 kb on + strand at 720.348 kb on + strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.349 kb on - strand at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.369 kb on + strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.370 kb on - strand, within A4249_RS03450 at 720.372 kb on + strand, within A4249_RS03450 at 720.588 kb on + strand, within A4249_RS03450 at 720.588 kb on + strand, within A4249_RS03450 at 720.588 kb on + strand, within A4249_RS03450 at 720.589 kb on - strand, within A4249_RS03450 at 720.589 kb on - strand, within A4249_RS03450 at 720.648 kb on + strand, within A4249_RS03450 at 720.648 kb on + strand, within A4249_RS03450 at 720.648 kb on + strand, within A4249_RS03450 at 720.648 kb on + strand, within A4249_RS03450 at 720.648 kb on + strand, within A4249_RS03450 at 720.649 kb on - strand, within A4249_RS03450 at 720.649 kb on - strand, within A4249_RS03450 at 720.649 kb on - strand, within A4249_RS03450 at 720.649 kb on - strand, within A4249_RS03450 at 720.649 kb on - strand, within A4249_RS03450 at 720.649 kb on - strand, within A4249_RS03450 at 720.649 kb on - strand, within A4249_RS03450 at 720.649 kb on - strand, within A4249_RS03450 at 720.664 kb on - strand, within A4249_RS03450 at 720.664 kb on - strand, within A4249_RS03450 at 720.699 kb on + strand, within A4249_RS03450 at 720.934 kb on + strand, within A4249_RS03455 at 720.934 kb on + strand, within A4249_RS03455 at 721.041 kb on + strand, within A4249_RS03455
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 718,938 + A4249_RS03430 0.39 +1.2 718,938 + A4249_RS03430 0.39 +0.4 718,938 + A4249_RS03430 0.39 +0.3 718,938 + A4249_RS03430 0.39 +0.5 718,938 + A4249_RS03430 0.39 +0.6 718,938 + A4249_RS03430 0.39 -0.0 718,938 + A4249_RS03430 0.39 +0.9 718,938 + A4249_RS03430 0.39 -0.1 718,939 - A4249_RS03430 0.39 +0.0 718,939 - A4249_RS03430 0.39 -0.0 718,939 - A4249_RS03430 0.39 +0.1 718,939 - A4249_RS03430 0.39 -0.3 718,939 - A4249_RS03430 0.39 +0.0 718,939 - A4249_RS03430 0.39 -0.6 718,939 - A4249_RS03430 0.39 -0.4 718,939 - A4249_RS03430 0.39 -0.1 718,939 - A4249_RS03430 0.39 -0.3 718,939 - A4249_RS03430 0.39 -0.2 719,052 + A4249_RS03430 0.54 -1.0 719,052 + A4249_RS03430 0.54 +0.0 719,053 - A4249_RS03430 0.54 +0.3 719,053 - A4249_RS03430 0.54 +0.1 719,053 - A4249_RS03430 0.54 +0.9 719,094 + A4249_RS03430 0.59 +0.8 719,094 + A4249_RS03430 0.59 +0.0 719,094 + A4249_RS03430 0.59 +0.3 719,095 - A4249_RS03430 0.59 +0.1 719,136 + A4249_RS03430 0.64 -0.9 719,136 + A4249_RS03430 0.64 -0.7 719,137 - A4249_RS03430 0.65 +0.6 719,137 - A4249_RS03430 0.65 +0.5 719,137 - A4249_RS03430 0.65 +0.1 719,445 + -1.4 719,445 + +0.4 719,445 + +0.0 719,445 + +0.0 719,446 - +0.2 719,446 - -0.6 719,446 - +0.1 719,528 + -1.4 719,528 + -0.4 719,528 + -0.6 719,528 + -0.2 719,528 + +0.3 719,528 + +0.6 719,528 + -0.3 719,528 + +0.9 719,528 + -0.2 719,528 + +0.2 719,528 + +0.2 719,529 - -0.7 719,529 - +0.5 719,529 - -1.6 719,529 - -0.2 719,529 - -0.2 719,529 - -0.8 719,529 - +1.6 719,529 - +0.5 719,529 - +0.7 719,530 + -2.0 719,530 + -0.9 719,530 + -0.5 719,530 + -0.5 719,530 + +1.0 719,530 + +0.8 719,530 + +0.1 719,530 + +0.6 719,530 + +0.1 719,530 + +0.2 719,530 + -0.4 719,530 + -0.0 719,530 + +1.0 719,530 + -1.3 719,530 + +0.3 719,531 - +0.5 719,531 - -0.4 719,531 - +0.6 719,531 - +0.2 719,531 - -0.1 719,531 - -0.4 719,531 - +0.1 719,531 - +0.3 719,531 - +0.1 719,531 - +0.2 719,531 - -0.1 719,531 - -0.2 719,531 - +0.2 719,531 - -0.9 719,531 - +0.2 719,531 - -1.1 719,531 - -1.0 719,531 - -0.3 719,531 - +1.1 719,534 + +0.0 719,534 + -0.2 719,534 + -0.4 719,534 + -0.8 719,534 + -1.7 719,534 + +0.0 719,534 + -0.1 719,534 + -0.4 719,534 + +0.5 719,534 + +0.3 719,535 - -0.5 719,535 - +0.1 719,535 - +0.8 719,535 - -0.1 719,535 - +0.9 719,535 - -0.1 719,535 - -0.8 719,535 - -0.3 719,535 - +0.2 719,600 + -0.1 719,600 + -0.2 719,600 + +0.3 719,619 + +0.1 719,621 + +0.0 719,621 + +0.3 719,622 - -0.8 719,664 + A4249_RS03435 0.23 +0.2 719,680 + A4249_RS03435 0.28 -0.3 719,919 + -0.2 719,919 + -0.6 719,919 + +0.9 719,919 + -0.9 719,919 + +0.3 719,920 - -0.2 719,920 - +0.2 719,920 - +0.2 720,034 + A4249_RS03440 0.58 -0.1 720,034 + A4249_RS03440 0.58 -2.5 720,034 + A4249_RS03440 0.58 -0.2 720,035 - A4249_RS03440 0.59 -1.2 720,035 - A4249_RS03440 0.59 -0.5 720,035 - A4249_RS03440 0.59 -0.0 720,063 + A4249_RS03440 0.72 +0.3 720,348 + +0.8 720,348 + +0.4 720,348 + +0.7 720,348 + -0.2 720,348 + -0.1 720,348 + +0.2 720,349 - -0.9 720,349 - -0.3 720,349 - -0.7 720,369 + A4249_RS03450 0.10 -0.4 720,369 + A4249_RS03450 0.10 +0.4 720,369 + A4249_RS03450 0.10 -0.2 720,369 + A4249_RS03450 0.10 +0.1 720,369 + A4249_RS03450 0.10 -0.2 720,369 + A4249_RS03450 0.10 +1.1 720,369 + A4249_RS03450 0.10 -0.0 720,369 + A4249_RS03450 0.10 -0.9 720,369 + A4249_RS03450 0.10 +0.0 720,369 + A4249_RS03450 0.10 +0.2 720,369 + A4249_RS03450 0.10 +0.2 720,369 + A4249_RS03450 0.10 -0.1 720,369 + A4249_RS03450 0.10 -0.2 720,369 + A4249_RS03450 0.10 -0.6 720,369 + A4249_RS03450 0.10 +0.9 720,369 + A4249_RS03450 0.10 +0.6 720,369 + A4249_RS03450 0.10 -0.8 720,369 + A4249_RS03450 0.10 +0.8 720,369 + A4249_RS03450 0.10 +0.3 720,369 + A4249_RS03450 0.10 +0.2 720,369 + A4249_RS03450 0.10 -1.0 720,369 + A4249_RS03450 0.10 -0.4 720,370 - A4249_RS03450 0.10 -0.2 720,370 - A4249_RS03450 0.10 -0.1 720,370 - A4249_RS03450 0.10 -0.4 720,370 - A4249_RS03450 0.10 +0.5 720,370 - A4249_RS03450 0.10 -0.9 720,370 - A4249_RS03450 0.10 +0.3 720,370 - A4249_RS03450 0.10 -0.1 720,370 - A4249_RS03450 0.10 -0.9 720,370 - A4249_RS03450 0.10 +0.7 720,370 - A4249_RS03450 0.10 +0.3 720,370 - A4249_RS03450 0.10 +0.6 720,370 - A4249_RS03450 0.10 -0.4 720,370 - A4249_RS03450 0.10 -0.1 720,370 - A4249_RS03450 0.10 -0.4 720,370 - A4249_RS03450 0.10 +0.8 720,370 - A4249_RS03450 0.10 -0.1 720,370 - A4249_RS03450 0.10 -0.0 720,370 - A4249_RS03450 0.10 -0.4 720,370 - A4249_RS03450 0.10 -0.0 720,370 - A4249_RS03450 0.10 +0.1 720,370 - A4249_RS03450 0.10 -0.6 720,372 + A4249_RS03450 0.11 -0.3 720,588 + A4249_RS03450 0.54 -1.1 720,588 + A4249_RS03450 0.54 -0.2 720,588 + A4249_RS03450 0.54 +0.3 720,589 - A4249_RS03450 0.54 +0.5 720,589 - A4249_RS03450 0.54 +0.5 720,648 + A4249_RS03450 0.66 +0.1 720,648 + A4249_RS03450 0.66 -0.0 720,648 + A4249_RS03450 0.66 -0.1 720,648 + A4249_RS03450 0.66 +1.9 720,648 + A4249_RS03450 0.66 -1.3 720,649 - A4249_RS03450 0.66 -0.0 720,649 - A4249_RS03450 0.66 -0.2 720,649 - A4249_RS03450 0.66 -0.7 720,649 - A4249_RS03450 0.66 -2.8 720,649 - A4249_RS03450 0.66 -0.4 720,649 - A4249_RS03450 0.66 -0.7 720,649 - A4249_RS03450 0.66 -0.1 720,649 - A4249_RS03450 0.66 +0.4 720,664 - A4249_RS03450 0.69 -0.2 720,664 - A4249_RS03450 0.69 -0.4 720,699 + A4249_RS03450 0.76 +0.7 720,934 + A4249_RS03455 0.19 +0.0 720,934 + A4249_RS03455 0.19 -0.7 721,041 + A4249_RS03455 0.36 -0.4
Or see this region's nucleotide sequence