Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03005 and A4249_RS03010 are separated by 128 nucleotides A4249_RS03010 and A4249_RS03015 are separated by 72 nucleotides A4249_RS03015 and A4249_RS16490 are separated by 22 nucleotides A4249_RS16490 and A4249_RS03020 are separated by 43 nucleotides
A4249_RS03005: A4249_RS03005 - glycosyltransferase family 4 protein, at 636,757 to 637,854
_RS03005
A4249_RS03010: A4249_RS03010 - peptidylprolyl isomerase, at 637,983 to 638,444
_RS03010
A4249_RS03015: A4249_RS03015 - RlmE family RNA methyltransferase, at 638,517 to 639,227
_RS03015
A4249_RS16490: A4249_RS16490 - hypothetical protein, at 639,250 to 639,627
_RS16490
A4249_RS03020: A4249_RS03020 - DUF2061 domain-containing protein, at 639,671 to 640,216
_RS03020
Position (kb) 638
639
640 Strain fitness (log2 ratio) -1
0
1 at 637.517 kb on + strand, within A4249_RS03005 at 637.517 kb on + strand, within A4249_RS03005 at 637.518 kb on - strand, within A4249_RS03005 at 637.518 kb on - strand, within A4249_RS03005 at 637.943 kb on + strand at 637.944 kb on - strand at 638.089 kb on + strand, within A4249_RS03010 at 638.089 kb on + strand, within A4249_RS03010 at 638.089 kb on + strand, within A4249_RS03010 at 638.089 kb on + strand, within A4249_RS03010 at 638.090 kb on - strand, within A4249_RS03010 at 638.100 kb on + strand, within A4249_RS03010 at 638.101 kb on - strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.314 kb on + strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.315 kb on - strand, within A4249_RS03010 at 638.482 kb on + strand at 638.482 kb on + strand at 638.482 kb on + strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.483 kb on - strand at 638.505 kb on + strand at 638.505 kb on + strand at 638.505 kb on + strand at 638.506 kb on - strand at 638.506 kb on - strand at 638.506 kb on - strand at 639.225 kb on + strand at 639.370 kb on + strand, within A4249_RS16490 at 639.370 kb on + strand, within A4249_RS16490 at 639.371 kb on - strand, within A4249_RS16490 at 639.425 kb on - strand, within A4249_RS16490 at 639.461 kb on - strand, within A4249_RS16490 at 639.502 kb on + strand, within A4249_RS16490 at 639.502 kb on + strand, within A4249_RS16490 at 639.503 kb on - strand, within A4249_RS16490 at 639.503 kb on - strand, within A4249_RS16490 at 639.563 kb on + strand, within A4249_RS16490 at 639.563 kb on + strand, within A4249_RS16490 at 639.563 kb on + strand, within A4249_RS16490 at 639.564 kb on - strand, within A4249_RS16490 at 639.564 kb on - strand, within A4249_RS16490 at 639.564 kb on - strand, within A4249_RS16490 at 639.564 kb on - strand, within A4249_RS16490 at 639.567 kb on + strand, within A4249_RS16490 at 639.568 kb on - strand, within A4249_RS16490 at 639.628 kb on + strand at 639.628 kb on + strand at 639.629 kb on - strand at 639.629 kb on - strand at 639.629 kb on - strand at 639.629 kb on - strand at 639.629 kb on - strand at 639.648 kb on - strand at 639.648 kb on - strand at 639.666 kb on + strand at 639.673 kb on - strand at 639.673 kb on - strand at 639.813 kb on + strand, within A4249_RS03020 at 639.813 kb on + strand, within A4249_RS03020 at 639.813 kb on + strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.814 kb on - strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.852 kb on + strand, within A4249_RS03020 at 639.853 kb on - strand, within A4249_RS03020 at 639.853 kb on - strand, within A4249_RS03020 at 639.853 kb on - strand, within A4249_RS03020 at 639.992 kb on + strand, within A4249_RS03020 at 639.992 kb on + strand, within A4249_RS03020 at 639.992 kb on + strand, within A4249_RS03020 at 639.992 kb on + strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.993 kb on - strand, within A4249_RS03020 at 639.994 kb on + strand, within A4249_RS03020 at 639.994 kb on + strand, within A4249_RS03020 at 639.995 kb on - strand, within A4249_RS03020 at 639.995 kb on - strand, within A4249_RS03020 at 639.995 kb on - strand, within A4249_RS03020 at 639.995 kb on - strand, within A4249_RS03020 at 640.051 kb on - strand, within A4249_RS03020 at 640.051 kb on - strand, within A4249_RS03020 at 640.161 kb on + strand, within A4249_RS03020 at 640.161 kb on + strand, within A4249_RS03020 at 640.161 kb on + strand, within A4249_RS03020 at 640.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 637,517 + A4249_RS03005 0.69 -1.3 637,517 + A4249_RS03005 0.69 -0.2 637,518 - A4249_RS03005 0.69 +1.0 637,518 - A4249_RS03005 0.69 -0.1 637,943 + +0.1 637,944 - +1.0 638,089 + A4249_RS03010 0.23 -0.1 638,089 + A4249_RS03010 0.23 +0.3 638,089 + A4249_RS03010 0.23 -1.2 638,089 + A4249_RS03010 0.23 +0.9 638,090 - A4249_RS03010 0.23 -1.3 638,100 + A4249_RS03010 0.25 -1.0 638,101 - A4249_RS03010 0.26 +0.4 638,314 + A4249_RS03010 0.72 +0.4 638,314 + A4249_RS03010 0.72 +0.4 638,314 + A4249_RS03010 0.72 -1.2 638,314 + A4249_RS03010 0.72 -1.0 638,314 + A4249_RS03010 0.72 -0.1 638,314 + A4249_RS03010 0.72 -0.3 638,314 + A4249_RS03010 0.72 -0.3 638,314 + A4249_RS03010 0.72 -0.1 638,314 + A4249_RS03010 0.72 +0.1 638,314 + A4249_RS03010 0.72 +0.3 638,314 + A4249_RS03010 0.72 -0.2 638,315 - A4249_RS03010 0.72 -0.9 638,315 - A4249_RS03010 0.72 -0.3 638,315 - A4249_RS03010 0.72 -0.1 638,315 - A4249_RS03010 0.72 -0.2 638,482 + -0.5 638,482 + +0.0 638,482 + -1.3 638,483 - -0.5 638,483 - -0.8 638,483 - -0.1 638,483 - -0.4 638,483 - +0.4 638,505 + +0.4 638,505 + -0.2 638,505 + +0.3 638,506 - -0.4 638,506 - -0.6 638,506 - -0.4 639,225 + -0.1 639,370 + A4249_RS16490 0.32 -0.2 639,370 + A4249_RS16490 0.32 +0.1 639,371 - A4249_RS16490 0.32 -0.2 639,425 - A4249_RS16490 0.46 +0.5 639,461 - A4249_RS16490 0.56 -0.4 639,502 + A4249_RS16490 0.67 +0.3 639,502 + A4249_RS16490 0.67 +1.4 639,503 - A4249_RS16490 0.67 +0.4 639,503 - A4249_RS16490 0.67 -0.3 639,563 + A4249_RS16490 0.83 +0.2 639,563 + A4249_RS16490 0.83 -0.2 639,563 + A4249_RS16490 0.83 +0.5 639,564 - A4249_RS16490 0.83 +0.2 639,564 - A4249_RS16490 0.83 +0.0 639,564 - A4249_RS16490 0.83 -0.4 639,564 - A4249_RS16490 0.83 +0.9 639,567 + A4249_RS16490 0.84 +0.2 639,568 - A4249_RS16490 0.84 +1.0 639,628 + -0.1 639,628 + +0.5 639,629 - -0.4 639,629 - +0.5 639,629 - +0.2 639,629 - +0.8 639,629 - +0.2 639,648 - -0.5 639,648 - +0.4 639,666 + -0.3 639,673 - -1.0 639,673 - -0.2 639,813 + A4249_RS03020 0.26 -0.1 639,813 + A4249_RS03020 0.26 -0.3 639,813 + A4249_RS03020 0.26 +0.1 639,814 - A4249_RS03020 0.26 +0.2 639,814 - A4249_RS03020 0.26 +0.1 639,814 - A4249_RS03020 0.26 -0.1 639,814 - A4249_RS03020 0.26 -0.7 639,814 - A4249_RS03020 0.26 +0.0 639,852 + A4249_RS03020 0.33 -1.0 639,852 + A4249_RS03020 0.33 +0.5 639,852 + A4249_RS03020 0.33 -0.3 639,852 + A4249_RS03020 0.33 -1.7 639,852 + A4249_RS03020 0.33 -0.5 639,853 - A4249_RS03020 0.33 +0.6 639,853 - A4249_RS03020 0.33 +0.3 639,853 - A4249_RS03020 0.33 -0.1 639,992 + A4249_RS03020 0.59 -0.7 639,992 + A4249_RS03020 0.59 -0.8 639,992 + A4249_RS03020 0.59 -0.9 639,992 + A4249_RS03020 0.59 -0.3 639,993 - A4249_RS03020 0.59 +0.6 639,993 - A4249_RS03020 0.59 -0.4 639,993 - A4249_RS03020 0.59 -0.4 639,993 - A4249_RS03020 0.59 -0.1 639,993 - A4249_RS03020 0.59 -1.1 639,993 - A4249_RS03020 0.59 -0.7 639,994 + A4249_RS03020 0.59 -0.1 639,994 + A4249_RS03020 0.59 +0.0 639,995 - A4249_RS03020 0.59 -1.2 639,995 - A4249_RS03020 0.59 +0.6 639,995 - A4249_RS03020 0.59 -0.2 639,995 - A4249_RS03020 0.59 -0.3 640,051 - A4249_RS03020 0.70 -0.2 640,051 - A4249_RS03020 0.70 -0.3 640,161 + A4249_RS03020 0.90 -0.7 640,161 + A4249_RS03020 0.90 -1.6 640,161 + A4249_RS03020 0.90 +0.6 640,162 - -0.2
Or see this region's nucleotide sequence