Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02825

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02820 and A4249_RS02825 are separated by 145 nucleotidesA4249_RS02825 and A4249_RS02830 are separated by 55 nucleotidesA4249_RS02830 and A4249_RS02835 are separated by 6 nucleotides A4249_RS02820: A4249_RS02820 - Ppx/GppA phosphatase family protein, at 597,318 to 598,418 _RS02820 A4249_RS02825: A4249_RS02825 - heat shock protein HspQ, at 598,564 to 598,872 _RS02825 A4249_RS02830: A4249_RS02830 - phenylalanine 4-monooxygenase, at 598,928 to 599,803 _RS02830 A4249_RS02835: A4249_RS02835 - MFS transporter, at 599,810 to 601,096 _RS02835 Position (kb) 598 599Strain fitness (log2 ratio) -3 -2 -1 0 1at 597.628 kb on + strand, within A4249_RS02820at 597.785 kb on - strand, within A4249_RS02820at 598.168 kb on + strand, within A4249_RS02820at 598.168 kb on + strand, within A4249_RS02820at 598.169 kb on - strand, within A4249_RS02820at 598.169 kb on - strand, within A4249_RS02820at 598.327 kb on + strandat 598.327 kb on + strandat 598.327 kb on + strandat 598.328 kb on - strandat 598.471 kb on - strandat 598.553 kb on + strandat 598.553 kb on + strandat 598.553 kb on + strandat 598.553 kb on + strandat 598.554 kb on - strandat 598.554 kb on - strandat 598.554 kb on - strandat 598.660 kb on + strand, within A4249_RS02825at 598.660 kb on + strand, within A4249_RS02825at 598.660 kb on + strand, within A4249_RS02825at 598.660 kb on + strand, within A4249_RS02825at 598.661 kb on - strand, within A4249_RS02825at 598.661 kb on - strand, within A4249_RS02825at 598.661 kb on - strand, within A4249_RS02825at 598.711 kb on + strand, within A4249_RS02825at 598.711 kb on + strand, within A4249_RS02825at 598.711 kb on + strand, within A4249_RS02825at 598.712 kb on - strand, within A4249_RS02825at 598.900 kb on + strandat 598.900 kb on + strandat 598.900 kb on + strandat 598.922 kb on + strandat 598.922 kb on + strandat 598.922 kb on + strandat 598.922 kb on + strandat 598.923 kb on - strandat 598.923 kb on - strandat 598.923 kb on - strandat 598.923 kb on - strandat 598.923 kb on - strandat 598.923 kb on - strandat 598.923 kb on - strandat 598.923 kb on - strandat 598.923 kb on - strandat 599.009 kb on + strandat 599.010 kb on - strandat 599.010 kb on - strandat 599.010 kb on - strandat 599.045 kb on + strand, within A4249_RS02830at 599.046 kb on - strand, within A4249_RS02830at 599.046 kb on - strand, within A4249_RS02830at 599.046 kb on - strand, within A4249_RS02830at 599.103 kb on + strand, within A4249_RS02830at 599.104 kb on - strand, within A4249_RS02830at 599.291 kb on + strand, within A4249_RS02830at 599.291 kb on + strand, within A4249_RS02830at 599.291 kb on + strand, within A4249_RS02830at 599.291 kb on + strand, within A4249_RS02830at 599.292 kb on - strand, within A4249_RS02830at 599.292 kb on - strand, within A4249_RS02830at 599.292 kb on - strand, within A4249_RS02830at 599.292 kb on - strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.366 kb on + strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.367 kb on - strand, within A4249_RS02830at 599.368 kb on + strand, within A4249_RS02830at 599.368 kb on + strand, within A4249_RS02830at 599.368 kb on + strand, within A4249_RS02830at 599.368 kb on + strand, within A4249_RS02830at 599.368 kb on + strand, within A4249_RS02830at 599.368 kb on + strand, within A4249_RS02830at 599.369 kb on - strand, within A4249_RS02830at 599.378 kb on + strand, within A4249_RS02830at 599.378 kb on + strand, within A4249_RS02830at 599.379 kb on - strand, within A4249_RS02830at 599.379 kb on - strand, within A4249_RS02830at 599.379 kb on - strand, within A4249_RS02830at 599.379 kb on - strand, within A4249_RS02830at 599.438 kb on + strand, within A4249_RS02830at 599.438 kb on + strand, within A4249_RS02830at 599.438 kb on + strand, within A4249_RS02830at 599.438 kb on + strand, within A4249_RS02830at 599.439 kb on - strand, within A4249_RS02830at 599.444 kb on + strand, within A4249_RS02830at 599.444 kb on + strand, within A4249_RS02830at 599.444 kb on + strand, within A4249_RS02830at 599.444 kb on + strand, within A4249_RS02830at 599.445 kb on - strand, within A4249_RS02830at 599.445 kb on - strand, within A4249_RS02830at 599.445 kb on - strand, within A4249_RS02830at 599.445 kb on - strand, within A4249_RS02830at 599.492 kb on + strand, within A4249_RS02830at 599.492 kb on + strand, within A4249_RS02830at 599.624 kb on + strand, within A4249_RS02830at 599.624 kb on + strand, within A4249_RS02830at 599.625 kb on - strand, within A4249_RS02830at 599.625 kb on - strand, within A4249_RS02830at 599.625 kb on - strand, within A4249_RS02830at 599.625 kb on - strand, within A4249_RS02830at 599.625 kb on - strand, within A4249_RS02830at 599.625 kb on - strand, within A4249_RS02830at 599.625 kb on - strand, within A4249_RS02830at 599.625 kb on - strand, within A4249_RS02830at 599.625 kb on - strand, within A4249_RS02830at 599.687 kb on + strand, within A4249_RS02830at 599.688 kb on - strand, within A4249_RS02830at 599.815 kb on + strandat 599.815 kb on + strandat 599.815 kb on + strandat 599.816 kb on - strandat 599.816 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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597,628 + A4249_RS02820 0.28 -0.5
597,785 - A4249_RS02820 0.42 -0.3
598,168 + A4249_RS02820 0.77 -0.8
598,168 + A4249_RS02820 0.77 +0.5
598,169 - A4249_RS02820 0.77 -1.9
598,169 - A4249_RS02820 0.77 +0.1
598,327 + +0.2
598,327 + -0.7
598,327 + -0.1
598,328 - -0.1
598,471 - +0.2
598,553 + -0.7
598,553 + -1.2
598,553 + -0.5
598,553 + +0.2
598,554 - -0.1
598,554 - -0.5
598,554 - +0.3
598,660 + A4249_RS02825 0.31 -0.6
598,660 + A4249_RS02825 0.31 +0.4
598,660 + A4249_RS02825 0.31 -0.9
598,660 + A4249_RS02825 0.31 -1.6
598,661 - A4249_RS02825 0.31 -0.6
598,661 - A4249_RS02825 0.31 +0.1
598,661 - A4249_RS02825 0.31 -0.3
598,711 + A4249_RS02825 0.48 -0.5
598,711 + A4249_RS02825 0.48 -0.2
598,711 + A4249_RS02825 0.48 +0.9
598,712 - A4249_RS02825 0.48 +0.1
598,900 + +0.8
598,900 + -0.6
598,900 + -0.1
598,922 + -0.2
598,922 + +0.4
598,922 + +0.4
598,922 + -0.4
598,923 - -2.0
598,923 - -0.8
598,923 - -0.2
598,923 - -0.9
598,923 - -0.2
598,923 - -0.5
598,923 - -0.3
598,923 - -0.7
598,923 - +0.1
599,009 + -0.3
599,010 - +0.1
599,010 - -0.4
599,010 - +0.0
599,045 + A4249_RS02830 0.13 +0.4
599,046 - A4249_RS02830 0.13 +0.4
599,046 - A4249_RS02830 0.13 -0.8
599,046 - A4249_RS02830 0.13 -0.7
599,103 + A4249_RS02830 0.20 -0.4
599,104 - A4249_RS02830 0.20 +0.0
599,291 + A4249_RS02830 0.41 -0.6
599,291 + A4249_RS02830 0.41 +0.2
599,291 + A4249_RS02830 0.41 -0.3
599,291 + A4249_RS02830 0.41 +0.6
599,292 - A4249_RS02830 0.42 -0.0
599,292 - A4249_RS02830 0.42 -0.1
599,292 - A4249_RS02830 0.42 +0.4
599,292 - A4249_RS02830 0.42 +0.0
599,366 + A4249_RS02830 0.50 -0.5
599,366 + A4249_RS02830 0.50 -0.2
599,366 + A4249_RS02830 0.50 -1.2
599,366 + A4249_RS02830 0.50 -0.1
599,366 + A4249_RS02830 0.50 -0.6
599,366 + A4249_RS02830 0.50 -0.2
599,366 + A4249_RS02830 0.50 -0.5
599,366 + A4249_RS02830 0.50 -1.3
599,366 + A4249_RS02830 0.50 -0.1
599,366 + A4249_RS02830 0.50 +0.1
599,366 + A4249_RS02830 0.50 +0.1
599,367 - A4249_RS02830 0.50 +0.7
599,367 - A4249_RS02830 0.50 +0.2
599,367 - A4249_RS02830 0.50 -0.1
599,367 - A4249_RS02830 0.50 +0.1
599,367 - A4249_RS02830 0.50 -0.5
599,367 - A4249_RS02830 0.50 -0.3
599,367 - A4249_RS02830 0.50 -0.4
599,367 - A4249_RS02830 0.50 +1.6
599,367 - A4249_RS02830 0.50 +0.4
599,367 - A4249_RS02830 0.50 -0.4
599,367 - A4249_RS02830 0.50 +0.5
599,367 - A4249_RS02830 0.50 +0.9
599,367 - A4249_RS02830 0.50 +1.2
599,368 + A4249_RS02830 0.50 -0.6
599,368 + A4249_RS02830 0.50 -0.2
599,368 + A4249_RS02830 0.50 +0.4
599,368 + A4249_RS02830 0.50 -3.3
599,368 + A4249_RS02830 0.50 -0.2
599,368 + A4249_RS02830 0.50 -0.9
599,369 - A4249_RS02830 0.50 +0.7
599,378 + A4249_RS02830 0.51 +0.1
599,378 + A4249_RS02830 0.51 -0.9
599,379 - A4249_RS02830 0.51 +0.4
599,379 - A4249_RS02830 0.51 -0.3
599,379 - A4249_RS02830 0.51 +0.8
599,379 - A4249_RS02830 0.51 -0.4
599,438 + A4249_RS02830 0.58 -0.1
599,438 + A4249_RS02830 0.58 -0.3
599,438 + A4249_RS02830 0.58 +1.0
599,438 + A4249_RS02830 0.58 -0.5
599,439 - A4249_RS02830 0.58 -1.3
599,444 + A4249_RS02830 0.59 -0.1
599,444 + A4249_RS02830 0.59 +1.3
599,444 + A4249_RS02830 0.59 -0.1
599,444 + A4249_RS02830 0.59 +0.5
599,445 - A4249_RS02830 0.59 +0.0
599,445 - A4249_RS02830 0.59 +0.5
599,445 - A4249_RS02830 0.59 -0.9
599,445 - A4249_RS02830 0.59 +0.5
599,492 + A4249_RS02830 0.64 +1.0
599,492 + A4249_RS02830 0.64 -0.9
599,624 + A4249_RS02830 0.79 +1.1
599,624 + A4249_RS02830 0.79 -0.5
599,625 - A4249_RS02830 0.80 -0.4
599,625 - A4249_RS02830 0.80 -0.5
599,625 - A4249_RS02830 0.80 -1.1
599,625 - A4249_RS02830 0.80 +0.5
599,625 - A4249_RS02830 0.80 -0.2
599,625 - A4249_RS02830 0.80 +0.1
599,625 - A4249_RS02830 0.80 -1.0
599,625 - A4249_RS02830 0.80 -0.2
599,625 - A4249_RS02830 0.80 +0.0
599,687 + A4249_RS02830 0.87 -0.2
599,688 - A4249_RS02830 0.87 -0.3
599,815 + -1.0
599,815 + -0.1
599,815 + -0.4
599,816 - -0.5
599,816 - +0.7

Or see this region's nucleotide sequence