Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02780 and A4249_RS02785 are separated by 29 nucleotides A4249_RS02785 and A4249_RS02790 are separated by 39 nucleotides A4249_RS02790 and A4249_RS02795 are separated by 122 nucleotides
A4249_RS02780: A4249_RS02780 - DMT family transporter, at 589,109 to 590,047
_RS02780
A4249_RS02785: A4249_RS02785 - DUF1003 domain-containing protein, at 590,077 to 590,610
_RS02785
A4249_RS02790: A4249_RS02790 - superoxide dismutase family protein, at 590,650 to 591,225
_RS02790
A4249_RS02795: A4249_RS02795 - DNA gyrase subunit A, at 591,348 to 594,125
_RS02795
Position (kb) 590
591 Strain fitness (log2 ratio) -2
-1
0
1 at 589.099 kb on + strand at 589.100 kb on - strand at 589.388 kb on + strand, within A4249_RS02780 at 589.400 kb on + strand, within A4249_RS02780 at 589.400 kb on + strand, within A4249_RS02780 at 589.401 kb on - strand, within A4249_RS02780 at 589.409 kb on + strand, within A4249_RS02780 at 589.827 kb on + strand, within A4249_RS02780 at 589.886 kb on + strand, within A4249_RS02780 at 589.886 kb on + strand, within A4249_RS02780 at 589.887 kb on - strand, within A4249_RS02780 at 589.887 kb on - strand, within A4249_RS02780 at 589.887 kb on - strand, within A4249_RS02780 at 590.062 kb on + strand at 590.062 kb on + strand at 590.063 kb on - strand at 590.063 kb on - strand at 590.347 kb on - strand, within A4249_RS02785 at 590.365 kb on + strand, within A4249_RS02785 at 590.482 kb on + strand, within A4249_RS02785 at 590.482 kb on + strand, within A4249_RS02785 at 590.482 kb on + strand, within A4249_RS02785 at 590.482 kb on + strand, within A4249_RS02785 at 590.483 kb on - strand, within A4249_RS02785 at 590.483 kb on - strand, within A4249_RS02785 at 590.641 kb on + strand at 590.641 kb on + strand at 590.642 kb on - strand at 590.651 kb on + strand at 590.651 kb on + strand at 590.651 kb on + strand at 590.651 kb on + strand at 590.651 kb on + strand at 590.652 kb on - strand at 590.652 kb on - strand at 590.652 kb on - strand at 590.652 kb on - strand at 590.652 kb on - strand at 591.213 kb on + strand at 591.213 kb on + strand at 591.213 kb on + strand at 591.214 kb on - strand at 591.292 kb on + strand at 591.333 kb on + strand at 591.333 kb on + strand at 591.333 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 589,099 + +0.0 589,100 - -0.0 589,388 + A4249_RS02780 0.30 +0.5 589,400 + A4249_RS02780 0.31 -0.7 589,400 + A4249_RS02780 0.31 -0.0 589,401 - A4249_RS02780 0.31 -0.8 589,409 + A4249_RS02780 0.32 -0.9 589,827 + A4249_RS02780 0.76 +0.2 589,886 + A4249_RS02780 0.83 -0.7 589,886 + A4249_RS02780 0.83 -0.2 589,887 - A4249_RS02780 0.83 +0.4 589,887 - A4249_RS02780 0.83 -0.1 589,887 - A4249_RS02780 0.83 -0.9 590,062 + -1.6 590,062 + -0.2 590,063 - +0.3 590,063 - -0.3 590,347 - A4249_RS02785 0.51 +1.1 590,365 + A4249_RS02785 0.54 -0.2 590,482 + A4249_RS02785 0.76 -0.8 590,482 + A4249_RS02785 0.76 -0.6 590,482 + A4249_RS02785 0.76 -0.3 590,482 + A4249_RS02785 0.76 -0.5 590,483 - A4249_RS02785 0.76 +0.2 590,483 - A4249_RS02785 0.76 -0.4 590,641 + -0.1 590,641 + -0.5 590,642 - -0.4 590,651 + +0.5 590,651 + -0.4 590,651 + +0.4 590,651 + -0.0 590,651 + +0.3 590,652 - +0.1 590,652 - +0.8 590,652 - -0.1 590,652 - +0.6 590,652 - +0.4 591,213 + -1.4 591,213 + -0.8 591,213 + -0.1 591,214 - -0.5 591,292 + +1.2 591,333 + -1.8 591,333 + +0.2 591,333 + -0.0
Or see this region's nucleotide sequence