Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02110 and A4249_RS02115 are separated by 49 nucleotides A4249_RS02115 and A4249_RS02120 are separated by 328 nucleotides A4249_RS02120 and A4249_RS02125 are separated by 114 nucleotides
A4249_RS02110: A4249_RS02110 - TonB-dependent receptor, at 442,864 to 445,353
_RS02110
A4249_RS02115: A4249_RS02115 - ATP-binding protein, at 445,403 to 446,890
_RS02115
A4249_RS02120: A4249_RS02120 - MarR family transcriptional regulator, at 447,219 to 447,662
_RS02120
A4249_RS02125: A4249_RS02125 - globin-coupled sensor protein, at 447,777 to 449,387
_RS02125
Position (kb) 445
446
447 Strain fitness (log2 ratio) -2
-1
0
1
2 at 444.492 kb on + strand, within A4249_RS02110 at 444.492 kb on + strand, within A4249_RS02110 at 444.493 kb on - strand, within A4249_RS02110 at 444.493 kb on - strand, within A4249_RS02110 at 444.493 kb on - strand, within A4249_RS02110 at 444.580 kb on + strand, within A4249_RS02110 at 444.581 kb on - strand, within A4249_RS02110 at 444.586 kb on + strand, within A4249_RS02110 at 444.586 kb on + strand, within A4249_RS02110 at 444.586 kb on + strand, within A4249_RS02110 at 444.586 kb on + strand, within A4249_RS02110 at 444.586 kb on + strand, within A4249_RS02110 at 444.586 kb on + strand, within A4249_RS02110 at 444.587 kb on - strand, within A4249_RS02110 at 444.587 kb on - strand, within A4249_RS02110 at 444.587 kb on - strand, within A4249_RS02110 at 444.592 kb on + strand, within A4249_RS02110 at 444.592 kb on + strand, within A4249_RS02110 at 444.592 kb on + strand, within A4249_RS02110 at 444.592 kb on + strand, within A4249_RS02110 at 444.592 kb on + strand, within A4249_RS02110 at 444.592 kb on + strand, within A4249_RS02110 at 444.592 kb on + strand, within A4249_RS02110 at 444.592 kb on + strand, within A4249_RS02110 at 444.592 kb on + strand, within A4249_RS02110 at 444.593 kb on - strand, within A4249_RS02110 at 444.593 kb on - strand, within A4249_RS02110 at 444.593 kb on - strand, within A4249_RS02110 at 444.593 kb on - strand, within A4249_RS02110 at 444.593 kb on - strand, within A4249_RS02110 at 444.593 kb on - strand, within A4249_RS02110 at 444.593 kb on - strand, within A4249_RS02110 at 444.601 kb on + strand, within A4249_RS02110 at 444.602 kb on - strand, within A4249_RS02110 at 444.619 kb on + strand, within A4249_RS02110 at 444.619 kb on + strand, within A4249_RS02110 at 444.619 kb on + strand, within A4249_RS02110 at 444.619 kb on + strand, within A4249_RS02110 at 444.748 kb on + strand, within A4249_RS02110 at 444.748 kb on + strand, within A4249_RS02110 at 444.748 kb on + strand, within A4249_RS02110 at 444.748 kb on + strand, within A4249_RS02110 at 444.749 kb on - strand, within A4249_RS02110 at 444.749 kb on - strand, within A4249_RS02110 at 444.749 kb on - strand, within A4249_RS02110 at 444.749 kb on - strand, within A4249_RS02110 at 444.784 kb on + strand, within A4249_RS02110 at 444.784 kb on + strand, within A4249_RS02110 at 444.784 kb on + strand, within A4249_RS02110 at 444.785 kb on - strand, within A4249_RS02110 at 444.785 kb on - strand, within A4249_RS02110 at 444.904 kb on + strand, within A4249_RS02110 at 444.904 kb on + strand, within A4249_RS02110 at 444.904 kb on + strand, within A4249_RS02110 at 444.904 kb on + strand, within A4249_RS02110 at 444.904 kb on + strand, within A4249_RS02110 at 444.904 kb on + strand, within A4249_RS02110 at 444.905 kb on - strand, within A4249_RS02110 at 444.905 kb on - strand, within A4249_RS02110 at 444.905 kb on - strand, within A4249_RS02110 at 444.905 kb on - strand, within A4249_RS02110 at 444.994 kb on - strand, within A4249_RS02110 at 444.994 kb on - strand, within A4249_RS02110 at 445.072 kb on + strand, within A4249_RS02110 at 445.072 kb on + strand, within A4249_RS02110 at 445.072 kb on + strand, within A4249_RS02110 at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.126 kb on + strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.127 kb on - strand at 445.128 kb on + strand at 445.128 kb on + strand at 445.128 kb on + strand at 445.128 kb on + strand at 445.129 kb on - strand at 445.129 kb on - strand at 445.129 kb on - strand at 445.129 kb on - strand at 445.162 kb on + strand at 445.345 kb on + strand at 445.345 kb on + strand at 445.346 kb on - strand at 445.346 kb on - strand at 445.404 kb on + strand at 445.404 kb on + strand at 445.404 kb on + strand at 445.404 kb on + strand at 445.404 kb on + strand at 445.404 kb on + strand at 445.404 kb on + strand at 445.404 kb on + strand at 445.405 kb on - strand at 445.405 kb on - strand at 445.405 kb on - strand at 445.405 kb on - strand at 445.405 kb on - strand at 445.405 kb on - strand at 445.406 kb on + strand at 445.662 kb on + strand, within A4249_RS02115 at 445.662 kb on + strand, within A4249_RS02115 at 445.662 kb on + strand, within A4249_RS02115 at 445.663 kb on - strand, within A4249_RS02115 at 445.663 kb on - strand, within A4249_RS02115 at 445.663 kb on - strand, within A4249_RS02115 at 445.801 kb on - strand, within A4249_RS02115 at 445.915 kb on + strand, within A4249_RS02115 at 445.915 kb on + strand, within A4249_RS02115 at 445.915 kb on + strand, within A4249_RS02115 at 445.915 kb on + strand, within A4249_RS02115 at 446.098 kb on + strand, within A4249_RS02115 at 446.098 kb on + strand, within A4249_RS02115 at 446.098 kb on + strand, within A4249_RS02115 at 446.099 kb on - strand, within A4249_RS02115 at 446.099 kb on - strand, within A4249_RS02115 at 446.099 kb on - strand, within A4249_RS02115 at 446.099 kb on - strand, within A4249_RS02115 at 446.099 kb on - strand, within A4249_RS02115 at 446.103 kb on + strand, within A4249_RS02115 at 446.619 kb on + strand, within A4249_RS02115 at 446.619 kb on + strand, within A4249_RS02115 at 446.619 kb on + strand, within A4249_RS02115 at 446.620 kb on - strand, within A4249_RS02115 at 446.620 kb on - strand, within A4249_RS02115 at 446.659 kb on + strand, within A4249_RS02115 at 446.659 kb on + strand, within A4249_RS02115 at 446.659 kb on + strand, within A4249_RS02115 at 446.660 kb on - strand, within A4249_RS02115 at 446.665 kb on + strand, within A4249_RS02115 at 446.676 kb on + strand, within A4249_RS02115 at 446.720 kb on + strand, within A4249_RS02115 at 446.720 kb on + strand, within A4249_RS02115 at 446.720 kb on + strand, within A4249_RS02115 at 446.720 kb on + strand, within A4249_RS02115 at 446.721 kb on - strand, within A4249_RS02115 at 446.721 kb on - strand, within A4249_RS02115 at 446.721 kb on - strand, within A4249_RS02115 at 446.826 kb on + strand at 446.826 kb on + strand at 446.897 kb on - strand at 446.897 kb on - strand at 446.951 kb on + strand at 446.951 kb on + strand at 446.952 kb on - strand at 446.952 kb on - strand at 446.952 kb on - strand at 447.068 kb on + strand at 447.069 kb on - strand at 447.098 kb on + strand at 447.185 kb on + strand at 447.185 kb on + strand at 447.185 kb on + strand at 447.185 kb on + strand at 447.185 kb on + strand at 447.185 kb on + strand at 447.185 kb on + strand at 447.185 kb on + strand at 447.185 kb on + strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.186 kb on - strand at 447.252 kb on + strand at 447.252 kb on + strand at 447.252 kb on + strand at 447.252 kb on + strand at 447.252 kb on + strand at 447.252 kb on + strand at 447.252 kb on + strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.253 kb on - strand at 447.424 kb on + strand, within A4249_RS02120 at 447.424 kb on + strand, within A4249_RS02120 at 447.555 kb on + strand, within A4249_RS02120 at 447.555 kb on + strand, within A4249_RS02120 at 447.555 kb on + strand, within A4249_RS02120 at 447.555 kb on + strand, within A4249_RS02120 at 447.555 kb on + strand, within A4249_RS02120 at 447.556 kb on - strand, within A4249_RS02120 at 447.556 kb on - strand, within A4249_RS02120 at 447.556 kb on - strand, within A4249_RS02120 at 447.704 kb on + strand at 447.704 kb on + strand at 447.704 kb on + strand at 447.705 kb on - strand at 447.705 kb on - strand at 447.733 kb on + strand at 447.733 kb on + strand at 447.733 kb on + strand at 447.734 kb on - strand at 447.734 kb on - strand at 447.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 444,492 + A4249_RS02110 0.65 +0.4 444,492 + A4249_RS02110 0.65 +0.2 444,493 - A4249_RS02110 0.65 -0.1 444,493 - A4249_RS02110 0.65 -0.9 444,493 - A4249_RS02110 0.65 +0.8 444,580 + A4249_RS02110 0.69 -0.7 444,581 - A4249_RS02110 0.69 -0.1 444,586 + A4249_RS02110 0.69 +0.2 444,586 + A4249_RS02110 0.69 +0.0 444,586 + A4249_RS02110 0.69 -0.5 444,586 + A4249_RS02110 0.69 +0.6 444,586 + A4249_RS02110 0.69 +0.9 444,586 + A4249_RS02110 0.69 -0.3 444,587 - A4249_RS02110 0.69 +0.4 444,587 - A4249_RS02110 0.69 +0.3 444,587 - A4249_RS02110 0.69 -0.7 444,592 + A4249_RS02110 0.69 -0.3 444,592 + A4249_RS02110 0.69 +0.4 444,592 + A4249_RS02110 0.69 +0.1 444,592 + A4249_RS02110 0.69 +0.3 444,592 + A4249_RS02110 0.69 -0.2 444,592 + A4249_RS02110 0.69 -0.8 444,592 + A4249_RS02110 0.69 +0.5 444,592 + A4249_RS02110 0.69 -0.1 444,592 + A4249_RS02110 0.69 +1.0 444,593 - A4249_RS02110 0.69 -0.1 444,593 - A4249_RS02110 0.69 +0.8 444,593 - A4249_RS02110 0.69 +1.3 444,593 - A4249_RS02110 0.69 +0.1 444,593 - A4249_RS02110 0.69 -0.2 444,593 - A4249_RS02110 0.69 +0.5 444,593 - A4249_RS02110 0.69 -0.1 444,601 + A4249_RS02110 0.70 +1.6 444,602 - A4249_RS02110 0.70 +1.5 444,619 + A4249_RS02110 0.70 -0.2 444,619 + A4249_RS02110 0.70 +0.2 444,619 + A4249_RS02110 0.70 +0.1 444,619 + A4249_RS02110 0.70 -0.6 444,748 + A4249_RS02110 0.76 -0.2 444,748 + A4249_RS02110 0.76 +1.6 444,748 + A4249_RS02110 0.76 -0.3 444,748 + A4249_RS02110 0.76 +0.1 444,749 - A4249_RS02110 0.76 +0.4 444,749 - A4249_RS02110 0.76 +0.2 444,749 - A4249_RS02110 0.76 -1.0 444,749 - A4249_RS02110 0.76 +0.5 444,784 + A4249_RS02110 0.77 +1.1 444,784 + A4249_RS02110 0.77 -1.8 444,784 + A4249_RS02110 0.77 +0.3 444,785 - A4249_RS02110 0.77 +0.0 444,785 - A4249_RS02110 0.77 -0.3 444,904 + A4249_RS02110 0.82 -0.1 444,904 + A4249_RS02110 0.82 +0.3 444,904 + A4249_RS02110 0.82 -0.4 444,904 + A4249_RS02110 0.82 -0.8 444,904 + A4249_RS02110 0.82 +0.1 444,904 + A4249_RS02110 0.82 -0.0 444,905 - A4249_RS02110 0.82 -0.1 444,905 - A4249_RS02110 0.82 +1.1 444,905 - A4249_RS02110 0.82 -0.3 444,905 - A4249_RS02110 0.82 -0.6 444,994 - A4249_RS02110 0.86 -2.2 444,994 - A4249_RS02110 0.86 -0.2 445,072 + A4249_RS02110 0.89 -0.4 445,072 + A4249_RS02110 0.89 -1.7 445,072 + A4249_RS02110 0.89 +0.2 445,126 + +0.4 445,126 + +0.2 445,126 + -0.5 445,126 + +0.2 445,126 + -0.4 445,126 + +0.1 445,126 + -0.1 445,126 + +0.3 445,126 + -0.4 445,126 + -0.5 445,126 + +0.4 445,126 + +0.2 445,127 - +0.1 445,127 - +0.0 445,127 - -1.2 445,127 - -0.2 445,127 - -0.0 445,127 - -0.2 445,127 - +1.9 445,127 - -1.1 445,127 - +0.6 445,127 - -1.5 445,127 - +0.9 445,127 - +0.5 445,127 - -0.0 445,128 + +0.3 445,128 + -0.3 445,128 + -0.2 445,128 + +0.3 445,129 - -0.5 445,129 - +0.1 445,129 - -0.1 445,129 - -0.5 445,162 + -0.1 445,345 + -0.2 445,345 + -1.7 445,346 - -1.4 445,346 - +1.0 445,404 + -0.0 445,404 + -0.7 445,404 + -0.2 445,404 + +0.0 445,404 + +0.5 445,404 + +0.2 445,404 + -0.5 445,404 + +0.4 445,405 - -0.0 445,405 - +0.2 445,405 - -0.4 445,405 - +0.3 445,405 - -0.8 445,405 - -0.1 445,406 + +0.0 445,662 + A4249_RS02115 0.17 -1.1 445,662 + A4249_RS02115 0.17 -0.9 445,662 + A4249_RS02115 0.17 +0.5 445,663 - A4249_RS02115 0.17 -0.6 445,663 - A4249_RS02115 0.17 -0.1 445,663 - A4249_RS02115 0.17 +1.1 445,801 - A4249_RS02115 0.27 -0.2 445,915 + A4249_RS02115 0.34 -0.1 445,915 + A4249_RS02115 0.34 +0.1 445,915 + A4249_RS02115 0.34 -0.1 445,915 + A4249_RS02115 0.34 -0.4 446,098 + A4249_RS02115 0.47 -0.5 446,098 + A4249_RS02115 0.47 +0.0 446,098 + A4249_RS02115 0.47 -0.0 446,099 - A4249_RS02115 0.47 +0.5 446,099 - A4249_RS02115 0.47 -0.2 446,099 - A4249_RS02115 0.47 +0.0 446,099 - A4249_RS02115 0.47 +0.2 446,099 - A4249_RS02115 0.47 +0.0 446,103 + A4249_RS02115 0.47 -0.1 446,619 + A4249_RS02115 0.82 +0.2 446,619 + A4249_RS02115 0.82 -0.7 446,619 + A4249_RS02115 0.82 -0.7 446,620 - A4249_RS02115 0.82 +0.0 446,620 - A4249_RS02115 0.82 +0.5 446,659 + A4249_RS02115 0.84 -1.2 446,659 + A4249_RS02115 0.84 -1.2 446,659 + A4249_RS02115 0.84 -0.3 446,660 - A4249_RS02115 0.84 -0.7 446,665 + A4249_RS02115 0.85 +0.6 446,676 + A4249_RS02115 0.86 +0.2 446,720 + A4249_RS02115 0.89 -0.1 446,720 + A4249_RS02115 0.89 +0.2 446,720 + A4249_RS02115 0.89 +0.0 446,720 + A4249_RS02115 0.89 +0.0 446,721 - A4249_RS02115 0.89 -0.4 446,721 - A4249_RS02115 0.89 -1.1 446,721 - A4249_RS02115 0.89 -0.6 446,826 + +0.1 446,826 + -0.2 446,897 - -0.4 446,897 - -0.1 446,951 + -0.4 446,951 + -0.2 446,952 - +0.0 446,952 - -0.8 446,952 - +0.1 447,068 + +0.4 447,069 - -2.4 447,098 + +0.2 447,185 + -0.6 447,185 + -1.0 447,185 + +0.4 447,185 + -0.2 447,185 + +0.4 447,185 + -1.1 447,185 + +0.0 447,185 + +0.1 447,185 + -0.0 447,186 - +0.5 447,186 - -0.4 447,186 - -2.6 447,186 - +0.4 447,186 - -0.1 447,186 - -0.2 447,186 - -2.0 447,186 - +0.4 447,186 - -0.3 447,186 - +1.0 447,186 - -0.5 447,186 - +0.3 447,186 - +0.8 447,252 + -0.7 447,252 + +0.2 447,252 + +0.1 447,252 + +0.3 447,252 + -0.1 447,252 + -0.5 447,252 + +0.3 447,253 - -0.4 447,253 - -0.3 447,253 - -0.2 447,253 - -0.3 447,253 - +0.2 447,253 - +0.5 447,253 - +0.4 447,253 - -0.1 447,253 - -0.5 447,253 - +0.3 447,253 - -0.0 447,424 + A4249_RS02120 0.46 +0.2 447,424 + A4249_RS02120 0.46 +0.8 447,555 + A4249_RS02120 0.76 -0.2 447,555 + A4249_RS02120 0.76 +0.3 447,555 + A4249_RS02120 0.76 +0.2 447,555 + A4249_RS02120 0.76 +0.1 447,555 + A4249_RS02120 0.76 -0.2 447,556 - A4249_RS02120 0.76 +0.6 447,556 - A4249_RS02120 0.76 -0.5 447,556 - A4249_RS02120 0.76 +0.9 447,704 + +0.2 447,704 + +0.8 447,704 + +0.5 447,705 - +1.3 447,705 - +0.3 447,733 + +0.3 447,733 + +0.0 447,733 + -1.3 447,734 - +0.5 447,734 - +0.5 447,734 - -0.1
Or see this region's nucleotide sequence