Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02060

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02055 and A4249_RS02060 overlap by 4 nucleotidesA4249_RS02060 and A4249_RS02065 are separated by 53 nucleotides A4249_RS02055: A4249_RS02055 - fumarylacetoacetate hydrolase family protein, at 425,904 to 427,052 _RS02055 A4249_RS02060: A4249_RS02060 - SDR family oxidoreductase, at 427,049 to 427,807 _RS02060 A4249_RS02065: A4249_RS02065 - sugar porter family MFS transporter, at 427,861 to 429,294 _RS02065 Position (kb) 427 428Strain fitness (log2 ratio) -2 -1 0 1at 426.151 kb on + strand, within A4249_RS02055at 426.151 kb on + strand, within A4249_RS02055at 426.151 kb on + strand, within A4249_RS02055at 426.151 kb on + strand, within A4249_RS02055at 426.151 kb on + strand, within A4249_RS02055at 426.152 kb on - strand, within A4249_RS02055at 426.152 kb on - strand, within A4249_RS02055at 426.152 kb on - strand, within A4249_RS02055at 426.381 kb on + strand, within A4249_RS02055at 426.381 kb on + strand, within A4249_RS02055at 426.405 kb on + strand, within A4249_RS02055at 426.406 kb on - strand, within A4249_RS02055at 426.406 kb on - strand, within A4249_RS02055at 426.406 kb on - strand, within A4249_RS02055at 426.406 kb on - strand, within A4249_RS02055at 426.517 kb on + strand, within A4249_RS02055at 426.517 kb on + strand, within A4249_RS02055at 426.517 kb on + strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.518 kb on - strand, within A4249_RS02055at 426.548 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.580 kb on + strand, within A4249_RS02055at 426.581 kb on - strand, within A4249_RS02055at 426.581 kb on - strand, within A4249_RS02055at 426.623 kb on + strand, within A4249_RS02055at 426.623 kb on + strand, within A4249_RS02055at 426.624 kb on - strand, within A4249_RS02055at 426.816 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.837 kb on + strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 426.838 kb on - strand, within A4249_RS02055at 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.064 kb on + strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.065 kb on - strandat 427.066 kb on + strandat 427.379 kb on + strand, within A4249_RS02060at 427.379 kb on + strand, within A4249_RS02060at 427.379 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.418 kb on + strand, within A4249_RS02060at 427.419 kb on - strand, within A4249_RS02060at 427.526 kb on + strand, within A4249_RS02060at 427.527 kb on - strand, within A4249_RS02060at 427.652 kb on + strand, within A4249_RS02060at 427.652 kb on + strand, within A4249_RS02060at 427.652 kb on + strand, within A4249_RS02060at 427.652 kb on + strand, within A4249_RS02060at 427.653 kb on - strand, within A4249_RS02060at 427.653 kb on - strand, within A4249_RS02060at 427.653 kb on - strand, within A4249_RS02060at 427.653 kb on - strand, within A4249_RS02060at 427.781 kb on + strandat 427.781 kb on + strandat 427.781 kb on + strandat 427.782 kb on - strandat 427.782 kb on - strandat 427.805 kb on + strandat 427.806 kb on - strandat 427.976 kb on - strandat 428.162 kb on + strand, within A4249_RS02065at 428.162 kb on + strand, within A4249_RS02065at 428.162 kb on + strand, within A4249_RS02065at 428.162 kb on + strand, within A4249_RS02065at 428.162 kb on + strand, within A4249_RS02065at 428.162 kb on + strand, within A4249_RS02065at 428.162 kb on + strand, within A4249_RS02065at 428.162 kb on + strand, within A4249_RS02065at 428.163 kb on - strand, within A4249_RS02065at 428.163 kb on - strand, within A4249_RS02065at 428.225 kb on + strand, within A4249_RS02065at 428.226 kb on - strand, within A4249_RS02065at 428.269 kb on + strand, within A4249_RS02065at 428.269 kb on + strand, within A4249_RS02065at 428.269 kb on + strand, within A4249_RS02065at 428.269 kb on + strand, within A4249_RS02065at 428.269 kb on + strand, within A4249_RS02065at 428.269 kb on + strand, within A4249_RS02065at 428.269 kb on + strand, within A4249_RS02065at 428.269 kb on + strand, within A4249_RS02065at 428.269 kb on + strand, within A4249_RS02065at 428.270 kb on - strand, within A4249_RS02065at 428.270 kb on - strand, within A4249_RS02065at 428.270 kb on - strand, within A4249_RS02065at 428.270 kb on - strand, within A4249_RS02065at 428.270 kb on - strand, within A4249_RS02065at 428.270 kb on - strand, within A4249_RS02065at 428.270 kb on - strand, within A4249_RS02065at 428.271 kb on + strand, within A4249_RS02065at 428.271 kb on + strand, within A4249_RS02065at 428.271 kb on + strand, within A4249_RS02065at 428.271 kb on + strand, within A4249_RS02065at 428.271 kb on + strand, within A4249_RS02065at 428.271 kb on + strand, within A4249_RS02065at 428.271 kb on + strand, within A4249_RS02065at 428.272 kb on - strand, within A4249_RS02065at 428.272 kb on - strand, within A4249_RS02065at 428.272 kb on - strand, within A4249_RS02065at 428.368 kb on + strand, within A4249_RS02065at 428.368 kb on + strand, within A4249_RS02065at 428.368 kb on + strand, within A4249_RS02065at 428.368 kb on + strand, within A4249_RS02065at 428.368 kb on + strand, within A4249_RS02065at 428.368 kb on + strand, within A4249_RS02065at 428.369 kb on - strand, within A4249_RS02065at 428.369 kb on - strand, within A4249_RS02065at 428.369 kb on - strand, within A4249_RS02065at 428.369 kb on - strand, within A4249_RS02065at 428.369 kb on - strand, within A4249_RS02065at 428.369 kb on - strand, within A4249_RS02065at 428.369 kb on - strand, within A4249_RS02065at 428.369 kb on - strand, within A4249_RS02065at 428.369 kb on - strand, within A4249_RS02065at 428.470 kb on + strand, within A4249_RS02065at 428.470 kb on + strand, within A4249_RS02065at 428.470 kb on + strand, within A4249_RS02065at 428.470 kb on + strand, within A4249_RS02065at 428.470 kb on + strand, within A4249_RS02065at 428.471 kb on - strand, within A4249_RS02065at 428.471 kb on - strand, within A4249_RS02065at 428.471 kb on - strand, within A4249_RS02065at 428.471 kb on - strand, within A4249_RS02065at 428.725 kb on - strand, within A4249_RS02065at 428.725 kb on - strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.740 kb on + strand, within A4249_RS02065at 428.741 kb on - strand, within A4249_RS02065at 428.741 kb on - strand, within A4249_RS02065at 428.741 kb on - strand, within A4249_RS02065at 428.741 kb on - strand, within A4249_RS02065at 428.741 kb on - strand, within A4249_RS02065at 428.744 kb on - strand, within A4249_RS02065at 428.744 kb on - strand, within A4249_RS02065at 428.744 kb on - strand, within A4249_RS02065

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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426,151 + A4249_RS02055 0.21 +0.3
426,151 + A4249_RS02055 0.21 -0.4
426,151 + A4249_RS02055 0.21 -1.2
426,151 + A4249_RS02055 0.21 -0.1
426,151 + A4249_RS02055 0.21 +0.6
426,152 - A4249_RS02055 0.22 -2.2
426,152 - A4249_RS02055 0.22 +0.0
426,152 - A4249_RS02055 0.22 +0.0
426,381 + A4249_RS02055 0.42 -0.1
426,381 + A4249_RS02055 0.42 +0.1
426,405 + A4249_RS02055 0.44 +1.6
426,406 - A4249_RS02055 0.44 +0.9
426,406 - A4249_RS02055 0.44 -0.3
426,406 - A4249_RS02055 0.44 -0.7
426,406 - A4249_RS02055 0.44 +0.5
426,517 + A4249_RS02055 0.53 +0.9
426,517 + A4249_RS02055 0.53 +1.3
426,517 + A4249_RS02055 0.53 -0.5
426,518 - A4249_RS02055 0.53 -0.8
426,518 - A4249_RS02055 0.53 +0.6
426,518 - A4249_RS02055 0.53 -0.2
426,518 - A4249_RS02055 0.53 +0.7
426,518 - A4249_RS02055 0.53 +0.0
426,518 - A4249_RS02055 0.53 -1.2
426,518 - A4249_RS02055 0.53 +1.1
426,548 + A4249_RS02055 0.56 +0.5
426,580 + A4249_RS02055 0.59 -0.2
426,580 + A4249_RS02055 0.59 +0.2
426,580 + A4249_RS02055 0.59 +0.8
426,580 + A4249_RS02055 0.59 -0.3
426,580 + A4249_RS02055 0.59 -0.9
426,580 + A4249_RS02055 0.59 +0.0
426,580 + A4249_RS02055 0.59 +0.2
426,580 + A4249_RS02055 0.59 +0.3
426,580 + A4249_RS02055 0.59 +0.6
426,581 - A4249_RS02055 0.59 +0.2
426,581 - A4249_RS02055 0.59 +0.0
426,623 + A4249_RS02055 0.63 -0.0
426,623 + A4249_RS02055 0.63 +0.3
426,624 - A4249_RS02055 0.63 -0.4
426,816 + A4249_RS02055 0.79 +0.3
426,837 + A4249_RS02055 0.81 -0.2
426,837 + A4249_RS02055 0.81 -0.3
426,837 + A4249_RS02055 0.81 +0.8
426,837 + A4249_RS02055 0.81 +0.4
426,837 + A4249_RS02055 0.81 +0.1
426,837 + A4249_RS02055 0.81 +0.6
426,838 - A4249_RS02055 0.81 -0.3
426,838 - A4249_RS02055 0.81 -0.4
426,838 - A4249_RS02055 0.81 -0.1
426,838 - A4249_RS02055 0.81 +0.3
426,838 - A4249_RS02055 0.81 -1.5
426,838 - A4249_RS02055 0.81 +0.1
426,838 - A4249_RS02055 0.81 +0.5
427,064 + -0.6
427,064 + +0.2
427,064 + +0.3
427,064 + +0.0
427,064 + +0.2
427,064 + -0.3
427,064 + -0.0
427,064 + +0.7
427,065 - +0.4
427,065 - +0.2
427,065 - -0.2
427,065 - -1.7
427,065 - +0.3
427,065 - -1.3
427,065 - +0.5
427,065 - +1.2
427,066 + +0.5
427,379 + A4249_RS02060 0.43 -0.2
427,379 + A4249_RS02060 0.43 +0.9
427,379 + A4249_RS02060 0.43 -0.1
427,418 + A4249_RS02060 0.49 +1.1
427,418 + A4249_RS02060 0.49 -0.1
427,418 + A4249_RS02060 0.49 -0.7
427,418 + A4249_RS02060 0.49 +0.1
427,418 + A4249_RS02060 0.49 -0.5
427,419 - A4249_RS02060 0.49 +0.1
427,526 + A4249_RS02060 0.63 -0.1
427,527 - A4249_RS02060 0.63 +0.3
427,652 + A4249_RS02060 0.79 -1.0
427,652 + A4249_RS02060 0.79 +0.3
427,652 + A4249_RS02060 0.79 +0.1
427,652 + A4249_RS02060 0.79 -1.4
427,653 - A4249_RS02060 0.80 -0.4
427,653 - A4249_RS02060 0.80 +0.0
427,653 - A4249_RS02060 0.80 -0.2
427,653 - A4249_RS02060 0.80 +0.8
427,781 + +0.1
427,781 + +0.3
427,781 + -0.5
427,782 - +0.6
427,782 - +0.5
427,805 + -1.7
427,806 - -1.3
427,976 - +0.2
428,162 + A4249_RS02065 0.21 +0.8
428,162 + A4249_RS02065 0.21 -0.9
428,162 + A4249_RS02065 0.21 -0.4
428,162 + A4249_RS02065 0.21 +0.6
428,162 + A4249_RS02065 0.21 -0.1
428,162 + A4249_RS02065 0.21 -0.1
428,162 + A4249_RS02065 0.21 -0.2
428,162 + A4249_RS02065 0.21 +0.5
428,163 - A4249_RS02065 0.21 -0.5
428,163 - A4249_RS02065 0.21 +0.2
428,225 + A4249_RS02065 0.25 -0.8
428,226 - A4249_RS02065 0.25 -2.2
428,269 + A4249_RS02065 0.28 -0.4
428,269 + A4249_RS02065 0.28 -0.5
428,269 + A4249_RS02065 0.28 +0.6
428,269 + A4249_RS02065 0.28 +0.2
428,269 + A4249_RS02065 0.28 +0.8
428,269 + A4249_RS02065 0.28 -0.2
428,269 + A4249_RS02065 0.28 +0.0
428,269 + A4249_RS02065 0.28 -0.2
428,269 + A4249_RS02065 0.28 -1.2
428,270 - A4249_RS02065 0.29 -0.1
428,270 - A4249_RS02065 0.29 -0.3
428,270 - A4249_RS02065 0.29 -0.3
428,270 - A4249_RS02065 0.29 +0.6
428,270 - A4249_RS02065 0.29 -2.0
428,270 - A4249_RS02065 0.29 +0.8
428,270 - A4249_RS02065 0.29 -0.1
428,271 + A4249_RS02065 0.29 -0.3
428,271 + A4249_RS02065 0.29 +0.9
428,271 + A4249_RS02065 0.29 -0.1
428,271 + A4249_RS02065 0.29 -0.1
428,271 + A4249_RS02065 0.29 -0.1
428,271 + A4249_RS02065 0.29 +0.4
428,271 + A4249_RS02065 0.29 +0.5
428,272 - A4249_RS02065 0.29 +0.5
428,272 - A4249_RS02065 0.29 +0.2
428,272 - A4249_RS02065 0.29 +0.7
428,368 + A4249_RS02065 0.35 +0.1
428,368 + A4249_RS02065 0.35 +0.3
428,368 + A4249_RS02065 0.35 -0.3
428,368 + A4249_RS02065 0.35 -0.4
428,368 + A4249_RS02065 0.35 -0.7
428,368 + A4249_RS02065 0.35 -1.1
428,369 - A4249_RS02065 0.35 +0.2
428,369 - A4249_RS02065 0.35 +0.7
428,369 - A4249_RS02065 0.35 +0.0
428,369 - A4249_RS02065 0.35 -0.2
428,369 - A4249_RS02065 0.35 +0.2
428,369 - A4249_RS02065 0.35 -2.6
428,369 - A4249_RS02065 0.35 -0.1
428,369 - A4249_RS02065 0.35 +0.3
428,369 - A4249_RS02065 0.35 +0.1
428,470 + A4249_RS02065 0.42 +1.1
428,470 + A4249_RS02065 0.42 +0.3
428,470 + A4249_RS02065 0.42 +0.7
428,470 + A4249_RS02065 0.42 +0.4
428,470 + A4249_RS02065 0.42 -0.0
428,471 - A4249_RS02065 0.43 +0.2
428,471 - A4249_RS02065 0.43 -1.0
428,471 - A4249_RS02065 0.43 +0.5
428,471 - A4249_RS02065 0.43 +0.0
428,725 - A4249_RS02065 0.60 +0.3
428,725 - A4249_RS02065 0.60 +0.5
428,740 + A4249_RS02065 0.61 -0.5
428,740 + A4249_RS02065 0.61 -0.1
428,740 + A4249_RS02065 0.61 -0.0
428,740 + A4249_RS02065 0.61 +0.4
428,740 + A4249_RS02065 0.61 +0.5
428,740 + A4249_RS02065 0.61 -0.5
428,740 + A4249_RS02065 0.61 +0.5
428,740 + A4249_RS02065 0.61 +0.5
428,740 + A4249_RS02065 0.61 -0.3
428,740 + A4249_RS02065 0.61 +0.5
428,741 - A4249_RS02065 0.61 +0.4
428,741 - A4249_RS02065 0.61 +0.5
428,741 - A4249_RS02065 0.61 -0.1
428,741 - A4249_RS02065 0.61 +0.4
428,741 - A4249_RS02065 0.61 -0.1
428,744 - A4249_RS02065 0.62 +0.5
428,744 - A4249_RS02065 0.62 +0.3
428,744 - A4249_RS02065 0.62 +0.9

Or see this region's nucleotide sequence