Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01980 and A4249_RS01985 are separated by 100 nucleotides A4249_RS01985 and A4249_RS01990 are separated by 0 nucleotides A4249_RS01990 and A4249_RS01995 are separated by 94 nucleotides
A4249_RS01980: A4249_RS01980 - helix-turn-helix domain-containing protein, at 398,371 to 399,144
_RS01980
A4249_RS01985: A4249_RS01985 - SDR family oxidoreductase, at 399,245 to 399,994
_RS01985
A4249_RS01990: A4249_RS01990 - dihydroxy-acid dehydratase family protein, at 399,995 to 401,797
_RS01990
A4249_RS01995: A4249_RS01995 - tryptophan 7-halogenase, at 401,892 to 403,403
_RS01995
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.031 kb on - strand, within A4249_RS01980 at 399.031 kb on - strand, within A4249_RS01980 at 399.031 kb on - strand, within A4249_RS01980 at 399.031 kb on - strand, within A4249_RS01980 at 399.149 kb on + strand at 399.149 kb on + strand at 399.149 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.244 kb on + strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.257 kb on + strand at 399.258 kb on - strand at 399.258 kb on - strand at 399.563 kb on + strand, within A4249_RS01985 at 399.563 kb on + strand, within A4249_RS01985 at 399.563 kb on + strand, within A4249_RS01985 at 399.664 kb on + strand, within A4249_RS01985 at 399.664 kb on + strand, within A4249_RS01985 at 399.664 kb on + strand, within A4249_RS01985 at 399.710 kb on + strand, within A4249_RS01985 at 399.710 kb on + strand, within A4249_RS01985 at 399.711 kb on - strand, within A4249_RS01985 at 399.711 kb on - strand, within A4249_RS01985 at 399.711 kb on - strand, within A4249_RS01985 at 399.711 kb on - strand, within A4249_RS01985 at 399.712 kb on + strand, within A4249_RS01985 at 399.712 kb on + strand, within A4249_RS01985 at 399.713 kb on - strand, within A4249_RS01985 at 399.713 kb on - strand, within A4249_RS01985 at 399.866 kb on + strand, within A4249_RS01985 at 399.866 kb on + strand, within A4249_RS01985 at 399.866 kb on + strand, within A4249_RS01985 at 399.866 kb on + strand, within A4249_RS01985 at 399.866 kb on + strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.867 kb on - strand, within A4249_RS01985 at 399.968 kb on + strand at 399.968 kb on + strand at 399.968 kb on + strand at 399.968 kb on + strand at 399.968 kb on + strand at 399.968 kb on + strand at 399.968 kb on + strand at 399.968 kb on + strand at 399.968 kb on + strand at 399.968 kb on + strand at 399.969 kb on - strand at 399.969 kb on - strand at 399.969 kb on - strand at 399.969 kb on - strand at 399.969 kb on - strand at 399.969 kb on - strand at 399.969 kb on - strand at 399.969 kb on - strand at 399.969 kb on - strand at 399.969 kb on - strand at 399.969 kb on - strand at 400.079 kb on + strand at 400.080 kb on - strand at 400.080 kb on - strand at 400.091 kb on + strand at 400.100 kb on + strand at 400.319 kb on + strand, within A4249_RS01990 at 400.319 kb on + strand, within A4249_RS01990 at 400.319 kb on + strand, within A4249_RS01990 at 400.319 kb on + strand, within A4249_RS01990 at 400.319 kb on + strand, within A4249_RS01990 at 400.319 kb on + strand, within A4249_RS01990 at 400.320 kb on - strand, within A4249_RS01990 at 400.320 kb on - strand, within A4249_RS01990 at 400.320 kb on - strand, within A4249_RS01990 at 400.343 kb on + strand, within A4249_RS01990 at 400.343 kb on + strand, within A4249_RS01990 at 400.343 kb on + strand, within A4249_RS01990 at 400.344 kb on - strand, within A4249_RS01990 at 400.344 kb on - strand, within A4249_RS01990 at 400.344 kb on - strand, within A4249_RS01990 at 400.344 kb on - strand, within A4249_RS01990 at 400.550 kb on + strand, within A4249_RS01990 at 400.550 kb on + strand, within A4249_RS01990 at 400.550 kb on + strand, within A4249_RS01990 at 400.551 kb on - strand, within A4249_RS01990 at 400.551 kb on - strand, within A4249_RS01990 at 400.551 kb on - strand, within A4249_RS01990 at 400.598 kb on + strand, within A4249_RS01990 at 400.599 kb on - strand, within A4249_RS01990 at 400.599 kb on - strand, within A4249_RS01990 at 400.715 kb on + strand, within A4249_RS01990 at 400.716 kb on - strand, within A4249_RS01990 at 400.955 kb on + strand, within A4249_RS01990 at 400.955 kb on + strand, within A4249_RS01990 at 400.955 kb on + strand, within A4249_RS01990 at 400.956 kb on - strand, within A4249_RS01990 at 400.956 kb on - strand, within A4249_RS01990 at 400.956 kb on - strand, within A4249_RS01990 at 400.956 kb on - strand, within A4249_RS01990 at 400.956 kb on - strand, within A4249_RS01990 at 400.970 kb on + strand, within A4249_RS01990 at 400.970 kb on + strand, within A4249_RS01990 at 400.970 kb on + strand, within A4249_RS01990 at 400.970 kb on + strand, within A4249_RS01990 at 400.970 kb on + strand, within A4249_RS01990 at 400.970 kb on + strand, within A4249_RS01990 at 400.970 kb on + strand, within A4249_RS01990 at 400.971 kb on - strand, within A4249_RS01990 at 400.971 kb on - strand, within A4249_RS01990 at 400.974 kb on + strand, within A4249_RS01990 at 401.225 kb on + strand, within A4249_RS01990 at 401.225 kb on + strand, within A4249_RS01990 at 401.226 kb on - strand, within A4249_RS01990 at 401.226 kb on - strand, within A4249_RS01990 at 401.226 kb on - strand, within A4249_RS01990 at 401.294 kb on + strand, within A4249_RS01990 at 401.295 kb on - strand, within A4249_RS01990 at 401.295 kb on - strand, within A4249_RS01990 at 401.295 kb on - strand, within A4249_RS01990 at 401.417 kb on + strand, within A4249_RS01990 at 401.418 kb on - strand, within A4249_RS01990 at 401.655 kb on - strand at 401.660 kb on + strand at 401.660 kb on + strand at 401.660 kb on + strand at 401.660 kb on + strand at 401.661 kb on - strand at 401.661 kb on - strand at 401.750 kb on + strand at 401.750 kb on + strand at 401.750 kb on + strand at 401.751 kb on - strand at 401.751 kb on - strand at 401.751 kb on - strand at 401.751 kb on - strand at 401.751 kb on - strand at 401.804 kb on + strand at 401.804 kb on + strand at 401.804 kb on + strand at 401.805 kb on - strand at 401.805 kb on - strand at 401.854 kb on + strand at 401.854 kb on + strand at 401.893 kb on + strand at 401.893 kb on + strand at 401.893 kb on + strand at 401.893 kb on + strand at 401.893 kb on + strand at 402.110 kb on - strand, within A4249_RS01995 at 402.156 kb on + strand, within A4249_RS01995 at 402.156 kb on + strand, within A4249_RS01995 at 402.156 kb on + strand, within A4249_RS01995 at 402.156 kb on + strand, within A4249_RS01995 at 402.157 kb on - strand, within A4249_RS01995 at 402.157 kb on - strand, within A4249_RS01995 at 402.157 kb on - strand, within A4249_RS01995 at 402.226 kb on + strand, within A4249_RS01995 at 402.226 kb on + strand, within A4249_RS01995 at 402.226 kb on + strand, within A4249_RS01995 at 402.226 kb on + strand, within A4249_RS01995 at 402.227 kb on - strand, within A4249_RS01995 at 402.227 kb on - strand, within A4249_RS01995 at 402.227 kb on - strand, within A4249_RS01995 at 402.227 kb on - strand, within A4249_RS01995 at 402.227 kb on - strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.283 kb on + strand, within A4249_RS01995 at 402.284 kb on - strand, within A4249_RS01995 at 402.284 kb on - strand, within A4249_RS01995 at 402.284 kb on - strand, within A4249_RS01995 at 402.284 kb on - strand, within A4249_RS01995 at 402.284 kb on - strand, within A4249_RS01995 at 402.284 kb on - strand, within A4249_RS01995 at 402.284 kb on - strand, within A4249_RS01995 at 402.284 kb on - strand, within A4249_RS01995 at 402.284 kb on - strand, within A4249_RS01995 at 402.342 kb on + strand, within A4249_RS01995 at 402.342 kb on + strand, within A4249_RS01995 at 402.342 kb on + strand, within A4249_RS01995 at 402.343 kb on - strand, within A4249_RS01995 at 402.343 kb on - strand, within A4249_RS01995 at 402.550 kb on + strand, within A4249_RS01995 at 402.550 kb on + strand, within A4249_RS01995 at 402.550 kb on + strand, within A4249_RS01995 at 402.550 kb on + strand, within A4249_RS01995 at 402.550 kb on + strand, within A4249_RS01995 at 402.551 kb on - strand, within A4249_RS01995 at 402.551 kb on - strand, within A4249_RS01995 at 402.551 kb on - strand, within A4249_RS01995 at 402.551 kb on - strand, within A4249_RS01995 at 402.551 kb on - strand, within A4249_RS01995 at 402.551 kb on - strand, within A4249_RS01995 at 402.551 kb on - strand, within A4249_RS01995 at 402.551 kb on - strand, within A4249_RS01995 at 402.556 kb on + strand, within A4249_RS01995 at 402.556 kb on + strand, within A4249_RS01995 at 402.556 kb on + strand, within A4249_RS01995 at 402.556 kb on + strand, within A4249_RS01995 at 402.556 kb on + strand, within A4249_RS01995 at 402.557 kb on - strand, within A4249_RS01995 at 402.557 kb on - strand, within A4249_RS01995 at 402.557 kb on - strand, within A4249_RS01995 at 402.557 kb on - strand, within A4249_RS01995 at 402.557 kb on - strand, within A4249_RS01995 at 402.627 kb on - strand, within A4249_RS01995 at 402.628 kb on + strand, within A4249_RS01995 at 402.628 kb on + strand, within A4249_RS01995 at 402.628 kb on + strand, within A4249_RS01995 at 402.628 kb on + strand, within A4249_RS01995 at 402.628 kb on + strand, within A4249_RS01995 at 402.629 kb on - strand, within A4249_RS01995 at 402.629 kb on - strand, within A4249_RS01995
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 399,031 - A4249_RS01980 0.85 +0.9 399,031 - A4249_RS01980 0.85 +0.6 399,031 - A4249_RS01980 0.85 +0.2 399,031 - A4249_RS01980 0.85 +1.9 399,149 + +0.1 399,149 + -0.2 399,149 + +0.4 399,244 + -0.6 399,244 + +0.0 399,244 + -0.0 399,244 + -0.5 399,244 + -0.1 399,244 + +0.2 399,244 + +0.0 399,244 + +0.2 399,244 + +0.3 399,244 + -0.2 399,244 + -0.6 399,244 + +0.6 399,244 + +0.2 399,244 + -0.1 399,244 + +0.3 399,244 + -1.1 399,244 + +0.9 399,244 + +0.1 399,244 + -0.2 399,245 - -1.0 399,245 - +0.8 399,245 - +0.9 399,245 - +0.5 399,245 - -0.5 399,245 - +0.2 399,245 - -0.1 399,245 - -0.6 399,245 - +0.4 399,245 - +0.2 399,245 - +0.1 399,245 - -0.5 399,245 - -0.5 399,257 + +0.0 399,258 - +0.1 399,258 - -0.2 399,563 + A4249_RS01985 0.42 -1.1 399,563 + A4249_RS01985 0.42 +0.4 399,563 + A4249_RS01985 0.42 -0.3 399,664 + A4249_RS01985 0.56 -0.0 399,664 + A4249_RS01985 0.56 -0.6 399,664 + A4249_RS01985 0.56 +0.4 399,710 + A4249_RS01985 0.62 -0.7 399,710 + A4249_RS01985 0.62 -0.2 399,711 - A4249_RS01985 0.62 +0.1 399,711 - A4249_RS01985 0.62 +0.5 399,711 - A4249_RS01985 0.62 -0.4 399,711 - A4249_RS01985 0.62 +0.2 399,712 + A4249_RS01985 0.62 +0.2 399,712 + A4249_RS01985 0.62 +0.9 399,713 - A4249_RS01985 0.62 +0.1 399,713 - A4249_RS01985 0.62 +0.4 399,866 + A4249_RS01985 0.83 -1.7 399,866 + A4249_RS01985 0.83 +0.4 399,866 + A4249_RS01985 0.83 -0.5 399,866 + A4249_RS01985 0.83 -0.1 399,866 + A4249_RS01985 0.83 -1.0 399,867 - A4249_RS01985 0.83 +0.4 399,867 - A4249_RS01985 0.83 -1.2 399,867 - A4249_RS01985 0.83 -0.1 399,867 - A4249_RS01985 0.83 -0.4 399,867 - A4249_RS01985 0.83 -0.5 399,867 - A4249_RS01985 0.83 -0.3 399,867 - A4249_RS01985 0.83 -0.4 399,867 - A4249_RS01985 0.83 -0.1 399,867 - A4249_RS01985 0.83 -0.5 399,867 - A4249_RS01985 0.83 -0.2 399,968 + -1.2 399,968 + -0.8 399,968 + +0.0 399,968 + -0.8 399,968 + +0.3 399,968 + -0.3 399,968 + +0.1 399,968 + +0.3 399,968 + -0.2 399,968 + +1.2 399,969 - +0.0 399,969 - -0.6 399,969 - -0.6 399,969 - +1.4 399,969 - -1.3 399,969 - -0.2 399,969 - +0.3 399,969 - -1.7 399,969 - -0.8 399,969 - +0.1 399,969 - +0.5 400,079 + +1.1 400,080 - +0.1 400,080 - -0.1 400,091 + +0.9 400,100 + -0.0 400,319 + A4249_RS01990 0.18 -0.6 400,319 + A4249_RS01990 0.18 -1.0 400,319 + A4249_RS01990 0.18 +0.6 400,319 + A4249_RS01990 0.18 -0.1 400,319 + A4249_RS01990 0.18 -0.7 400,319 + A4249_RS01990 0.18 -0.1 400,320 - A4249_RS01990 0.18 -0.3 400,320 - A4249_RS01990 0.18 +1.5 400,320 - A4249_RS01990 0.18 -1.2 400,343 + A4249_RS01990 0.19 -1.0 400,343 + A4249_RS01990 0.19 +0.3 400,343 + A4249_RS01990 0.19 -1.6 400,344 - A4249_RS01990 0.19 +0.6 400,344 - A4249_RS01990 0.19 -0.3 400,344 - A4249_RS01990 0.19 -0.1 400,344 - A4249_RS01990 0.19 -1.8 400,550 + A4249_RS01990 0.31 +1.2 400,550 + A4249_RS01990 0.31 +0.4 400,550 + A4249_RS01990 0.31 +0.3 400,551 - A4249_RS01990 0.31 -0.5 400,551 - A4249_RS01990 0.31 -1.1 400,551 - A4249_RS01990 0.31 -0.2 400,598 + A4249_RS01990 0.33 +0.0 400,599 - A4249_RS01990 0.33 -0.6 400,599 - A4249_RS01990 0.33 -0.4 400,715 + A4249_RS01990 0.40 +0.0 400,716 - A4249_RS01990 0.40 +1.0 400,955 + A4249_RS01990 0.53 -0.7 400,955 + A4249_RS01990 0.53 -1.4 400,955 + A4249_RS01990 0.53 -1.6 400,956 - A4249_RS01990 0.53 -0.4 400,956 - A4249_RS01990 0.53 -0.6 400,956 - A4249_RS01990 0.53 -0.5 400,956 - A4249_RS01990 0.53 -0.3 400,956 - A4249_RS01990 0.53 -0.5 400,970 + A4249_RS01990 0.54 +0.7 400,970 + A4249_RS01990 0.54 +0.4 400,970 + A4249_RS01990 0.54 +0.2 400,970 + A4249_RS01990 0.54 -0.4 400,970 + A4249_RS01990 0.54 +0.4 400,970 + A4249_RS01990 0.54 -0.4 400,970 + A4249_RS01990 0.54 -0.9 400,971 - A4249_RS01990 0.54 -0.4 400,971 - A4249_RS01990 0.54 -0.6 400,974 + A4249_RS01990 0.54 -0.3 401,225 + A4249_RS01990 0.68 +0.5 401,225 + A4249_RS01990 0.68 -0.3 401,226 - A4249_RS01990 0.68 -0.8 401,226 - A4249_RS01990 0.68 -0.2 401,226 - A4249_RS01990 0.68 -0.6 401,294 + A4249_RS01990 0.72 -0.0 401,295 - A4249_RS01990 0.72 +0.4 401,295 - A4249_RS01990 0.72 -0.3 401,295 - A4249_RS01990 0.72 -0.4 401,417 + A4249_RS01990 0.79 +0.2 401,418 - A4249_RS01990 0.79 -0.5 401,655 - -0.2 401,660 + -0.1 401,660 + +0.2 401,660 + +0.1 401,660 + +2.5 401,661 - -0.5 401,661 - -0.2 401,750 + +0.6 401,750 + +1.8 401,750 + +0.6 401,751 - +0.1 401,751 - -0.3 401,751 - +0.0 401,751 - -0.8 401,751 - +0.3 401,804 + +0.2 401,804 + +0.3 401,804 + -0.6 401,805 - +0.4 401,805 - -0.3 401,854 + -0.3 401,854 + +0.1 401,893 + -0.0 401,893 + -0.6 401,893 + +0.2 401,893 + -0.8 401,893 + +0.1 402,110 - A4249_RS01995 0.14 +0.7 402,156 + A4249_RS01995 0.17 -0.4 402,156 + A4249_RS01995 0.17 -2.0 402,156 + A4249_RS01995 0.17 -0.7 402,156 + A4249_RS01995 0.17 -0.7 402,157 - A4249_RS01995 0.18 -0.2 402,157 - A4249_RS01995 0.18 -0.0 402,157 - A4249_RS01995 0.18 -0.0 402,226 + A4249_RS01995 0.22 +0.6 402,226 + A4249_RS01995 0.22 +0.4 402,226 + A4249_RS01995 0.22 -0.5 402,226 + A4249_RS01995 0.22 -0.6 402,227 - A4249_RS01995 0.22 -0.5 402,227 - A4249_RS01995 0.22 +0.4 402,227 - A4249_RS01995 0.22 -0.2 402,227 - A4249_RS01995 0.22 +0.3 402,227 - A4249_RS01995 0.22 -0.8 402,283 + A4249_RS01995 0.26 -0.2 402,283 + A4249_RS01995 0.26 -0.1 402,283 + A4249_RS01995 0.26 +0.6 402,283 + A4249_RS01995 0.26 +0.4 402,283 + A4249_RS01995 0.26 +0.1 402,283 + A4249_RS01995 0.26 +0.8 402,283 + A4249_RS01995 0.26 -0.6 402,283 + A4249_RS01995 0.26 -0.3 402,283 + A4249_RS01995 0.26 -0.3 402,283 + A4249_RS01995 0.26 -0.5 402,283 + A4249_RS01995 0.26 +0.6 402,284 - A4249_RS01995 0.26 +0.6 402,284 - A4249_RS01995 0.26 -0.0 402,284 - A4249_RS01995 0.26 +0.3 402,284 - A4249_RS01995 0.26 +1.9 402,284 - A4249_RS01995 0.26 -1.7 402,284 - A4249_RS01995 0.26 +0.8 402,284 - A4249_RS01995 0.26 -0.4 402,284 - A4249_RS01995 0.26 -0.7 402,284 - A4249_RS01995 0.26 +0.4 402,342 + A4249_RS01995 0.30 +0.2 402,342 + A4249_RS01995 0.30 +0.3 402,342 + A4249_RS01995 0.30 -0.5 402,343 - A4249_RS01995 0.30 -0.1 402,343 - A4249_RS01995 0.30 -0.8 402,550 + A4249_RS01995 0.44 +0.4 402,550 + A4249_RS01995 0.44 +0.0 402,550 + A4249_RS01995 0.44 +0.9 402,550 + A4249_RS01995 0.44 +0.1 402,550 + A4249_RS01995 0.44 -2.6 402,551 - A4249_RS01995 0.44 -1.1 402,551 - A4249_RS01995 0.44 +0.1 402,551 - A4249_RS01995 0.44 -0.3 402,551 - A4249_RS01995 0.44 -1.1 402,551 - A4249_RS01995 0.44 +0.8 402,551 - A4249_RS01995 0.44 +0.8 402,551 - A4249_RS01995 0.44 +0.2 402,551 - A4249_RS01995 0.44 +0.6 402,556 + A4249_RS01995 0.44 -0.3 402,556 + A4249_RS01995 0.44 +0.8 402,556 + A4249_RS01995 0.44 +0.3 402,556 + A4249_RS01995 0.44 +0.0 402,556 + A4249_RS01995 0.44 +0.7 402,557 - A4249_RS01995 0.44 -0.0 402,557 - A4249_RS01995 0.44 -0.1 402,557 - A4249_RS01995 0.44 +0.5 402,557 - A4249_RS01995 0.44 +1.1 402,557 - A4249_RS01995 0.44 +0.0 402,627 - A4249_RS01995 0.49 -0.0 402,628 + A4249_RS01995 0.49 -0.4 402,628 + A4249_RS01995 0.49 +0.4 402,628 + A4249_RS01995 0.49 -0.9 402,628 + A4249_RS01995 0.49 -0.4 402,628 + A4249_RS01995 0.49 +0.4 402,629 - A4249_RS01995 0.49 +0.5 402,629 - A4249_RS01995 0.49 +0.0
Or see this region's nucleotide sequence