Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01945

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01935 and A4249_RS01940 are separated by 44 nucleotidesA4249_RS01940 and A4249_RS01945 are separated by 5 nucleotidesA4249_RS01945 and A4249_RS01950 are separated by 70 nucleotides A4249_RS01935: A4249_RS01935 - IPTL-CTERM sorting domain-containing protein, at 387,861 to 388,832 _RS01935 A4249_RS01940: A4249_RS01940 - exosortase H, at 388,877 to 389,428 _RS01940 A4249_RS01945: A4249_RS01945 - hypothetical protein, at 389,434 to 390,066 _RS01945 A4249_RS01950: A4249_RS01950 - CusA/CzcA family heavy metal efflux RND transporter, at 390,137 to 393,307 _RS01950 Position (kb) 389 390 391Strain fitness (log2 ratio) -2 -1 0 1 2at 388.443 kb on + strand, within A4249_RS01935at 388.443 kb on + strand, within A4249_RS01935at 388.443 kb on + strand, within A4249_RS01935at 388.443 kb on + strand, within A4249_RS01935at 388.444 kb on - strand, within A4249_RS01935at 388.444 kb on - strand, within A4249_RS01935at 388.444 kb on - strand, within A4249_RS01935at 388.460 kb on + strand, within A4249_RS01935at 388.460 kb on + strand, within A4249_RS01935at 388.460 kb on + strand, within A4249_RS01935at 388.461 kb on - strand, within A4249_RS01935at 388.500 kb on + strand, within A4249_RS01935at 388.500 kb on + strand, within A4249_RS01935at 388.500 kb on + strand, within A4249_RS01935at 388.500 kb on + strand, within A4249_RS01935at 388.500 kb on + strand, within A4249_RS01935at 388.500 kb on + strand, within A4249_RS01935at 388.500 kb on + strand, within A4249_RS01935at 388.500 kb on + strand, within A4249_RS01935at 388.500 kb on + strand, within A4249_RS01935at 388.501 kb on - strand, within A4249_RS01935at 388.501 kb on - strand, within A4249_RS01935at 388.501 kb on - strand, within A4249_RS01935at 388.501 kb on - strand, within A4249_RS01935at 388.501 kb on - strand, within A4249_RS01935at 388.501 kb on - strand, within A4249_RS01935at 388.507 kb on + strand, within A4249_RS01935at 388.507 kb on + strand, within A4249_RS01935at 388.533 kb on + strand, within A4249_RS01935at 388.533 kb on + strand, within A4249_RS01935at 388.533 kb on + strand, within A4249_RS01935at 388.534 kb on - strand, within A4249_RS01935at 388.534 kb on - strand, within A4249_RS01935at 388.534 kb on - strand, within A4249_RS01935at 388.534 kb on - strand, within A4249_RS01935at 388.534 kb on - strand, within A4249_RS01935at 388.534 kb on - strand, within A4249_RS01935at 388.534 kb on - strand, within A4249_RS01935at 388.572 kb on + strand, within A4249_RS01935at 388.573 kb on - strand, within A4249_RS01935at 388.573 kb on - strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.633 kb on + strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.634 kb on - strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.635 kb on + strand, within A4249_RS01935at 388.636 kb on - strand, within A4249_RS01935at 388.636 kb on - strand, within A4249_RS01935at 388.636 kb on - strand, within A4249_RS01935at 388.636 kb on - strand, within A4249_RS01935at 388.636 kb on - strand, within A4249_RS01935at 388.636 kb on - strand, within A4249_RS01935at 388.636 kb on - strand, within A4249_RS01935at 388.636 kb on - strand, within A4249_RS01935at 388.636 kb on - strand, within A4249_RS01935at 388.665 kb on + strand, within A4249_RS01935at 388.682 kb on + strand, within A4249_RS01935at 388.682 kb on + strand, within A4249_RS01935at 388.682 kb on + strand, within A4249_RS01935at 388.682 kb on + strand, within A4249_RS01935at 388.683 kb on - strand, within A4249_RS01935at 388.683 kb on - strand, within A4249_RS01935at 388.683 kb on - strand, within A4249_RS01935at 388.830 kb on + strandat 388.830 kb on + strandat 388.831 kb on - strandat 388.919 kb on + strandat 388.919 kb on + strandat 388.919 kb on + strandat 388.919 kb on + strandat 388.919 kb on + strandat 388.920 kb on - strandat 389.187 kb on + strand, within A4249_RS01940at 389.187 kb on + strand, within A4249_RS01940at 389.188 kb on - strand, within A4249_RS01940at 389.188 kb on - strand, within A4249_RS01940at 389.190 kb on + strand, within A4249_RS01940at 389.192 kb on + strand, within A4249_RS01940at 389.192 kb on + strand, within A4249_RS01940at 389.267 kb on + strand, within A4249_RS01940at 389.267 kb on + strand, within A4249_RS01940at 389.267 kb on + strand, within A4249_RS01940at 389.267 kb on + strand, within A4249_RS01940at 389.267 kb on + strand, within A4249_RS01940at 389.267 kb on + strand, within A4249_RS01940at 389.267 kb on + strand, within A4249_RS01940at 389.267 kb on + strand, within A4249_RS01940at 389.268 kb on - strand, within A4249_RS01940at 389.268 kb on - strand, within A4249_RS01940at 389.268 kb on - strand, within A4249_RS01940at 389.268 kb on - strand, within A4249_RS01940at 389.268 kb on - strand, within A4249_RS01940at 389.268 kb on - strand, within A4249_RS01940at 389.268 kb on - strand, within A4249_RS01940at 389.312 kb on + strand, within A4249_RS01940at 389.313 kb on - strand, within A4249_RS01940at 389.313 kb on - strand, within A4249_RS01940at 389.313 kb on - strand, within A4249_RS01940at 389.313 kb on - strand, within A4249_RS01940at 389.313 kb on - strand, within A4249_RS01940at 389.313 kb on - strand, within A4249_RS01940at 389.508 kb on - strand, within A4249_RS01945at 389.519 kb on + strand, within A4249_RS01945at 389.519 kb on + strand, within A4249_RS01945at 389.520 kb on - strand, within A4249_RS01945at 389.520 kb on - strand, within A4249_RS01945at 389.595 kb on - strand, within A4249_RS01945at 389.965 kb on + strand, within A4249_RS01945at 389.965 kb on + strand, within A4249_RS01945at 389.965 kb on + strand, within A4249_RS01945at 389.965 kb on + strand, within A4249_RS01945at 389.965 kb on + strand, within A4249_RS01945at 389.965 kb on + strand, within A4249_RS01945at 389.965 kb on + strand, within A4249_RS01945at 389.965 kb on + strand, within A4249_RS01945at 389.966 kb on - strand, within A4249_RS01945at 389.966 kb on - strand, within A4249_RS01945at 389.966 kb on - strand, within A4249_RS01945at 389.966 kb on - strand, within A4249_RS01945at 389.966 kb on - strand, within A4249_RS01945at 389.966 kb on - strand, within A4249_RS01945at 389.966 kb on - strand, within A4249_RS01945at 389.974 kb on + strand, within A4249_RS01945at 390.111 kb on + strandat 390.111 kb on + strandat 390.112 kb on - strandat 390.112 kb on - strandat 390.114 kb on + strandat 390.114 kb on + strandat 390.114 kb on + strandat 390.114 kb on + strandat 390.293 kb on + strandat 390.293 kb on + strandat 390.357 kb on + strandat 390.357 kb on + strandat 390.963 kb on - strand, within A4249_RS01950

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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388,443 + A4249_RS01935 0.60 +0.2
388,443 + A4249_RS01935 0.60 -0.5
388,443 + A4249_RS01935 0.60 -0.2
388,443 + A4249_RS01935 0.60 +0.3
388,444 - A4249_RS01935 0.60 +0.9
388,444 - A4249_RS01935 0.60 -0.4
388,444 - A4249_RS01935 0.60 -0.8
388,460 + A4249_RS01935 0.62 -0.0
388,460 + A4249_RS01935 0.62 -1.4
388,460 + A4249_RS01935 0.62 +0.5
388,461 - A4249_RS01935 0.62 -0.2
388,500 + A4249_RS01935 0.66 +0.2
388,500 + A4249_RS01935 0.66 -1.3
388,500 + A4249_RS01935 0.66 +0.1
388,500 + A4249_RS01935 0.66 -0.1
388,500 + A4249_RS01935 0.66 +0.2
388,500 + A4249_RS01935 0.66 +0.7
388,500 + A4249_RS01935 0.66 -0.3
388,500 + A4249_RS01935 0.66 -0.1
388,500 + A4249_RS01935 0.66 -0.6
388,501 - A4249_RS01935 0.66 +0.5
388,501 - A4249_RS01935 0.66 +0.0
388,501 - A4249_RS01935 0.66 +0.4
388,501 - A4249_RS01935 0.66 +1.4
388,501 - A4249_RS01935 0.66 +0.5
388,501 - A4249_RS01935 0.66 +0.8
388,507 + A4249_RS01935 0.66 +0.1
388,507 + A4249_RS01935 0.66 -0.5
388,533 + A4249_RS01935 0.69 +0.4
388,533 + A4249_RS01935 0.69 -0.3
388,533 + A4249_RS01935 0.69 +0.1
388,534 - A4249_RS01935 0.69 +0.2
388,534 - A4249_RS01935 0.69 +0.7
388,534 - A4249_RS01935 0.69 +0.2
388,534 - A4249_RS01935 0.69 -0.7
388,534 - A4249_RS01935 0.69 +1.1
388,534 - A4249_RS01935 0.69 +2.0
388,534 - A4249_RS01935 0.69 -0.2
388,572 + A4249_RS01935 0.73 -0.5
388,573 - A4249_RS01935 0.73 -0.6
388,573 - A4249_RS01935 0.73 -0.1
388,633 + A4249_RS01935 0.79 -0.6
388,633 + A4249_RS01935 0.79 +0.1
388,633 + A4249_RS01935 0.79 +0.1
388,633 + A4249_RS01935 0.79 +0.1
388,633 + A4249_RS01935 0.79 +0.3
388,633 + A4249_RS01935 0.79 -0.3
388,633 + A4249_RS01935 0.79 -0.0
388,633 + A4249_RS01935 0.79 +0.3
388,633 + A4249_RS01935 0.79 +0.6
388,633 + A4249_RS01935 0.79 -1.0
388,633 + A4249_RS01935 0.79 -0.1
388,633 + A4249_RS01935 0.79 -0.0
388,634 - A4249_RS01935 0.80 -0.0
388,634 - A4249_RS01935 0.80 +0.9
388,634 - A4249_RS01935 0.80 -0.4
388,634 - A4249_RS01935 0.80 -0.0
388,634 - A4249_RS01935 0.80 -0.4
388,634 - A4249_RS01935 0.80 +2.1
388,634 - A4249_RS01935 0.80 -0.5
388,634 - A4249_RS01935 0.80 -0.6
388,634 - A4249_RS01935 0.80 -0.0
388,634 - A4249_RS01935 0.80 +0.5
388,634 - A4249_RS01935 0.80 -0.4
388,634 - A4249_RS01935 0.80 -1.0
388,634 - A4249_RS01935 0.80 -0.2
388,634 - A4249_RS01935 0.80 -0.8
388,634 - A4249_RS01935 0.80 +0.2
388,634 - A4249_RS01935 0.80 +1.0
388,634 - A4249_RS01935 0.80 -0.2
388,635 + A4249_RS01935 0.80 -0.2
388,635 + A4249_RS01935 0.80 -0.8
388,635 + A4249_RS01935 0.80 +0.5
388,635 + A4249_RS01935 0.80 +0.6
388,635 + A4249_RS01935 0.80 -0.2
388,635 + A4249_RS01935 0.80 -0.1
388,635 + A4249_RS01935 0.80 -1.2
388,635 + A4249_RS01935 0.80 -0.0
388,635 + A4249_RS01935 0.80 -0.2
388,635 + A4249_RS01935 0.80 -0.5
388,635 + A4249_RS01935 0.80 +0.1
388,635 + A4249_RS01935 0.80 -0.3
388,636 - A4249_RS01935 0.80 -0.1
388,636 - A4249_RS01935 0.80 -0.6
388,636 - A4249_RS01935 0.80 -0.5
388,636 - A4249_RS01935 0.80 -0.4
388,636 - A4249_RS01935 0.80 -1.0
388,636 - A4249_RS01935 0.80 -0.6
388,636 - A4249_RS01935 0.80 +0.9
388,636 - A4249_RS01935 0.80 +1.0
388,636 - A4249_RS01935 0.80 -0.7
388,665 + A4249_RS01935 0.83 +0.0
388,682 + A4249_RS01935 0.84 +0.2
388,682 + A4249_RS01935 0.84 -1.8
388,682 + A4249_RS01935 0.84 +0.1
388,682 + A4249_RS01935 0.84 +1.4
388,683 - A4249_RS01935 0.85 +1.2
388,683 - A4249_RS01935 0.85 -0.2
388,683 - A4249_RS01935 0.85 +0.6
388,830 + +0.1
388,830 + +0.0
388,831 - -0.5
388,919 + +0.5
388,919 + +0.3
388,919 + -0.8
388,919 + -0.3
388,919 + +0.5
388,920 - +0.0
389,187 + A4249_RS01940 0.56 -0.4
389,187 + A4249_RS01940 0.56 -2.7
389,188 - A4249_RS01940 0.56 -0.1
389,188 - A4249_RS01940 0.56 -0.0
389,190 + A4249_RS01940 0.57 -0.5
389,192 + A4249_RS01940 0.57 +0.2
389,192 + A4249_RS01940 0.57 -0.9
389,267 + A4249_RS01940 0.71 +0.4
389,267 + A4249_RS01940 0.71 +0.0
389,267 + A4249_RS01940 0.71 -0.2
389,267 + A4249_RS01940 0.71 -0.5
389,267 + A4249_RS01940 0.71 +0.4
389,267 + A4249_RS01940 0.71 -1.4
389,267 + A4249_RS01940 0.71 -0.6
389,267 + A4249_RS01940 0.71 +0.1
389,268 - A4249_RS01940 0.71 +0.6
389,268 - A4249_RS01940 0.71 +0.2
389,268 - A4249_RS01940 0.71 +0.2
389,268 - A4249_RS01940 0.71 +0.3
389,268 - A4249_RS01940 0.71 -0.4
389,268 - A4249_RS01940 0.71 +0.1
389,268 - A4249_RS01940 0.71 +0.8
389,312 + A4249_RS01940 0.79 -0.3
389,313 - A4249_RS01940 0.79 +0.8
389,313 - A4249_RS01940 0.79 -0.3
389,313 - A4249_RS01940 0.79 -0.4
389,313 - A4249_RS01940 0.79 -0.1
389,313 - A4249_RS01940 0.79 +0.6
389,313 - A4249_RS01940 0.79 +0.0
389,508 - A4249_RS01945 0.12 -0.8
389,519 + A4249_RS01945 0.13 -0.2
389,519 + A4249_RS01945 0.13 +1.3
389,520 - A4249_RS01945 0.14 -0.1
389,520 - A4249_RS01945 0.14 -0.1
389,595 - A4249_RS01945 0.25 -0.5
389,965 + A4249_RS01945 0.84 -0.6
389,965 + A4249_RS01945 0.84 +0.3
389,965 + A4249_RS01945 0.84 -0.2
389,965 + A4249_RS01945 0.84 -0.7
389,965 + A4249_RS01945 0.84 -1.0
389,965 + A4249_RS01945 0.84 -0.0
389,965 + A4249_RS01945 0.84 -0.2
389,965 + A4249_RS01945 0.84 -0.4
389,966 - A4249_RS01945 0.84 +0.4
389,966 - A4249_RS01945 0.84 -0.4
389,966 - A4249_RS01945 0.84 -0.7
389,966 - A4249_RS01945 0.84 -0.1
389,966 - A4249_RS01945 0.84 -1.5
389,966 - A4249_RS01945 0.84 -0.3
389,966 - A4249_RS01945 0.84 +0.8
389,974 + A4249_RS01945 0.85 -0.0
390,111 + -0.1
390,111 + -0.2
390,112 - +0.6
390,112 - -0.8
390,114 + +0.7
390,114 + +0.4
390,114 + +0.5
390,114 + -0.1
390,293 + +0.2
390,293 + -0.2
390,357 + -0.4
390,357 + +0.0
390,963 - A4249_RS01950 0.26 -0.8

Or see this region's nucleotide sequence