Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01710

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01700 and A4249_RS01705 are separated by 82 nucleotidesA4249_RS01705 and A4249_RS01710 are separated by 10 nucleotidesA4249_RS01710 and A4249_RS01715 are separated by 54 nucleotidesA4249_RS01715 and A4249_RS01720 are separated by 42 nucleotides A4249_RS01700: A4249_RS01700 - dihydroneopterin aldolase, at 325,265 to 325,663 _RS01700 A4249_RS01705: A4249_RS01705 - hypothetical protein, at 325,746 to 326,402 _RS01705 A4249_RS01710: A4249_RS01710 - hypothetical protein, at 326,413 to 326,796 _RS01710 A4249_RS01715: A4249_RS01715 - GNAT family N-acetyltransferase, at 326,851 to 327,135 _RS01715 A4249_RS01720: A4249_RS01720 - SDR family oxidoreductase, at 327,178 to 328,164 _RS01720 Position (kb) 326 327Strain fitness (log2 ratio) -2 -1 0 1 2at 325.878 kb on - strand, within A4249_RS01705at 326.094 kb on + strand, within A4249_RS01705at 326.103 kb on + strand, within A4249_RS01705at 326.103 kb on + strand, within A4249_RS01705at 326.103 kb on + strand, within A4249_RS01705at 326.103 kb on + strand, within A4249_RS01705at 326.104 kb on - strand, within A4249_RS01705at 326.104 kb on - strand, within A4249_RS01705at 326.104 kb on - strand, within A4249_RS01705at 326.218 kb on - strand, within A4249_RS01705at 326.545 kb on + strand, within A4249_RS01710at 326.545 kb on + strand, within A4249_RS01710at 326.545 kb on + strand, within A4249_RS01710at 326.545 kb on + strand, within A4249_RS01710at 326.545 kb on + strand, within A4249_RS01710at 326.545 kb on + strand, within A4249_RS01710at 326.545 kb on + strand, within A4249_RS01710at 326.545 kb on + strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.546 kb on - strand, within A4249_RS01710at 326.705 kb on + strand, within A4249_RS01710at 326.705 kb on + strand, within A4249_RS01710at 326.705 kb on + strand, within A4249_RS01710at 326.705 kb on + strand, within A4249_RS01710at 326.705 kb on + strand, within A4249_RS01710at 326.705 kb on + strand, within A4249_RS01710at 326.705 kb on + strand, within A4249_RS01710at 326.706 kb on - strand, within A4249_RS01710at 326.706 kb on - strand, within A4249_RS01710at 326.938 kb on + strand, within A4249_RS01715at 326.938 kb on + strand, within A4249_RS01715at 326.939 kb on - strand, within A4249_RS01715at 326.939 kb on - strand, within A4249_RS01715at 326.942 kb on - strand, within A4249_RS01715at 326.946 kb on - strand, within A4249_RS01715at 326.946 kb on - strand, within A4249_RS01715at 327.082 kb on + strand, within A4249_RS01715at 327.082 kb on + strand, within A4249_RS01715at 327.082 kb on + strand, within A4249_RS01715at 327.082 kb on + strand, within A4249_RS01715at 327.115 kb on + strandat 327.115 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.125 kb on + strandat 327.126 kb on - strandat 327.126 kb on - strandat 327.126 kb on - strandat 327.126 kb on - strandat 327.126 kb on - strandat 327.126 kb on - strandat 327.260 kb on + strandat 327.260 kb on + strandat 327.437 kb on + strand, within A4249_RS01720at 327.437 kb on + strand, within A4249_RS01720at 327.467 kb on + strand, within A4249_RS01720at 327.467 kb on + strand, within A4249_RS01720at 327.467 kb on + strand, within A4249_RS01720at 327.467 kb on + strand, within A4249_RS01720at 327.467 kb on + strand, within A4249_RS01720at 327.468 kb on - strand, within A4249_RS01720at 327.468 kb on - strand, within A4249_RS01720at 327.572 kb on + strand, within A4249_RS01720at 327.573 kb on - strand, within A4249_RS01720at 327.573 kb on - strand, within A4249_RS01720at 327.573 kb on - strand, within A4249_RS01720at 327.573 kb on - strand, within A4249_RS01720at 327.578 kb on + strand, within A4249_RS01720at 327.579 kb on - strand, within A4249_RS01720at 327.579 kb on - strand, within A4249_RS01720at 327.579 kb on - strand, within A4249_RS01720at 327.614 kb on + strand, within A4249_RS01720at 327.614 kb on + strand, within A4249_RS01720at 327.614 kb on + strand, within A4249_RS01720at 327.614 kb on + strand, within A4249_RS01720at 327.615 kb on - strand, within A4249_RS01720at 327.615 kb on - strand, within A4249_RS01720at 327.615 kb on - strand, within A4249_RS01720

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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325,878 - A4249_RS01705 0.20 +1.6
326,094 + A4249_RS01705 0.53 +1.4
326,103 + A4249_RS01705 0.54 -0.4
326,103 + A4249_RS01705 0.54 -0.1
326,103 + A4249_RS01705 0.54 +0.4
326,103 + A4249_RS01705 0.54 -0.3
326,104 - A4249_RS01705 0.54 +1.2
326,104 - A4249_RS01705 0.54 -0.2
326,104 - A4249_RS01705 0.54 +2.4
326,218 - A4249_RS01705 0.72 +0.0
326,545 + A4249_RS01710 0.34 -0.6
326,545 + A4249_RS01710 0.34 -0.9
326,545 + A4249_RS01710 0.34 -0.6
326,545 + A4249_RS01710 0.34 -1.4
326,545 + A4249_RS01710 0.34 -0.2
326,545 + A4249_RS01710 0.34 +0.8
326,545 + A4249_RS01710 0.34 -0.7
326,545 + A4249_RS01710 0.34 +0.6
326,546 - A4249_RS01710 0.35 -0.4
326,546 - A4249_RS01710 0.35 +0.8
326,546 - A4249_RS01710 0.35 -1.2
326,546 - A4249_RS01710 0.35 -2.0
326,546 - A4249_RS01710 0.35 +0.9
326,546 - A4249_RS01710 0.35 +0.2
326,546 - A4249_RS01710 0.35 -0.6
326,546 - A4249_RS01710 0.35 -2.2
326,546 - A4249_RS01710 0.35 +0.2
326,546 - A4249_RS01710 0.35 +0.2
326,546 - A4249_RS01710 0.35 -0.6
326,546 - A4249_RS01710 0.35 +0.3
326,705 + A4249_RS01710 0.76 -0.4
326,705 + A4249_RS01710 0.76 -0.4
326,705 + A4249_RS01710 0.76 -0.1
326,705 + A4249_RS01710 0.76 -0.1
326,705 + A4249_RS01710 0.76 -0.4
326,705 + A4249_RS01710 0.76 -0.2
326,705 + A4249_RS01710 0.76 -0.9
326,706 - A4249_RS01710 0.76 +0.2
326,706 - A4249_RS01710 0.76 -0.7
326,938 + A4249_RS01715 0.31 +0.1
326,938 + A4249_RS01715 0.31 -1.1
326,939 - A4249_RS01715 0.31 +0.0
326,939 - A4249_RS01715 0.31 +0.8
326,942 - A4249_RS01715 0.32 -0.5
326,946 - A4249_RS01715 0.33 -1.0
326,946 - A4249_RS01715 0.33 -0.5
327,082 + A4249_RS01715 0.81 +0.1
327,082 + A4249_RS01715 0.81 -0.2
327,082 + A4249_RS01715 0.81 -0.2
327,082 + A4249_RS01715 0.81 +0.1
327,115 + -0.3
327,115 + -0.6
327,125 + -0.2
327,125 + +1.0
327,125 + +0.1
327,125 + +0.0
327,125 + +1.2
327,125 + -0.3
327,125 + -0.1
327,125 + -0.3
327,125 + -0.3
327,125 + +0.2
327,125 + -0.4
327,125 + -0.5
327,125 + -0.4
327,126 - -1.0
327,126 - +0.8
327,126 - -0.2
327,126 - +0.1
327,126 - -0.8
327,126 - +0.9
327,260 + -0.4
327,260 + +0.0
327,437 + A4249_RS01720 0.26 +0.6
327,437 + A4249_RS01720 0.26 -0.5
327,467 + A4249_RS01720 0.29 -0.9
327,467 + A4249_RS01720 0.29 +0.6
327,467 + A4249_RS01720 0.29 +0.3
327,467 + A4249_RS01720 0.29 +0.8
327,467 + A4249_RS01720 0.29 -0.3
327,468 - A4249_RS01720 0.29 -0.2
327,468 - A4249_RS01720 0.29 +1.0
327,572 + A4249_RS01720 0.40 -1.7
327,573 - A4249_RS01720 0.40 -0.4
327,573 - A4249_RS01720 0.40 -0.4
327,573 - A4249_RS01720 0.40 +0.2
327,573 - A4249_RS01720 0.40 -0.0
327,578 + A4249_RS01720 0.41 -0.1
327,579 - A4249_RS01720 0.41 -0.5
327,579 - A4249_RS01720 0.41 -0.3
327,579 - A4249_RS01720 0.41 -1.4
327,614 + A4249_RS01720 0.44 -0.2
327,614 + A4249_RS01720 0.44 -0.7
327,614 + A4249_RS01720 0.44 +0.0
327,614 + A4249_RS01720 0.44 +0.2
327,615 - A4249_RS01720 0.44 +0.5
327,615 - A4249_RS01720 0.44 -0.4
327,615 - A4249_RS01720 0.44 +0.2

Or see this region's nucleotide sequence