Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01605

Experiment: Cytosine 0.9 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01600 and A4249_RS01605 are separated by 13 nucleotidesA4249_RS01605 and A4249_RS01610 overlap by 1 nucleotidesA4249_RS01610 and A4249_RS01615 are separated by 46 nucleotides A4249_RS01600: A4249_RS01600 - HlyD family secretion protein, at 302,597 to 303,712 _RS01600 A4249_RS01605: A4249_RS01605 - MFS transporter, at 303,726 to 305,423 _RS01605 A4249_RS01610: A4249_RS01610 - TetR/AcrR family transcriptional regulator, at 305,423 to 305,998 _RS01610 A4249_RS01615: A4249_RS01615 - GNAT family N-acetyltransferase, at 306,045 to 306,554 _RS01615 Position (kb) 303 304 305 306Strain fitness (log2 ratio) -2 -1 0 1 2at 302.872 kb on + strand, within A4249_RS01600at 302.872 kb on + strand, within A4249_RS01600at 302.872 kb on + strand, within A4249_RS01600at 302.873 kb on - strand, within A4249_RS01600at 302.873 kb on - strand, within A4249_RS01600at 302.873 kb on - strand, within A4249_RS01600at 302.873 kb on - strand, within A4249_RS01600at 302.934 kb on + strand, within A4249_RS01600at 302.934 kb on + strand, within A4249_RS01600at 302.934 kb on + strand, within A4249_RS01600at 302.934 kb on + strand, within A4249_RS01600at 302.934 kb on + strand, within A4249_RS01600at 302.934 kb on + strand, within A4249_RS01600at 302.934 kb on + strand, within A4249_RS01600at 302.934 kb on + strand, within A4249_RS01600at 302.934 kb on + strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 302.935 kb on - strand, within A4249_RS01600at 303.381 kb on + strand, within A4249_RS01600at 303.382 kb on - strand, within A4249_RS01600at 303.382 kb on - strand, within A4249_RS01600at 303.382 kb on - strand, within A4249_RS01600at 303.459 kb on + strand, within A4249_RS01600at 303.459 kb on + strand, within A4249_RS01600at 303.459 kb on + strand, within A4249_RS01600at 303.459 kb on + strand, within A4249_RS01600at 303.460 kb on - strand, within A4249_RS01600at 303.460 kb on - strand, within A4249_RS01600at 303.460 kb on - strand, within A4249_RS01600at 303.460 kb on - strand, within A4249_RS01600at 303.504 kb on + strand, within A4249_RS01600at 303.504 kb on + strand, within A4249_RS01600at 303.504 kb on + strand, within A4249_RS01600at 303.505 kb on - strand, within A4249_RS01600at 303.505 kb on - strand, within A4249_RS01600at 303.505 kb on - strand, within A4249_RS01600at 303.505 kb on - strand, within A4249_RS01600at 303.505 kb on - strand, within A4249_RS01600at 303.558 kb on + strand, within A4249_RS01600at 303.558 kb on + strand, within A4249_RS01600at 303.558 kb on + strand, within A4249_RS01600at 303.558 kb on + strand, within A4249_RS01600at 303.558 kb on + strand, within A4249_RS01600at 303.558 kb on + strand, within A4249_RS01600at 303.559 kb on - strand, within A4249_RS01600at 303.559 kb on - strand, within A4249_RS01600at 303.559 kb on - strand, within A4249_RS01600at 303.559 kb on - strand, within A4249_RS01600at 303.559 kb on - strand, within A4249_RS01600at 303.559 kb on - strand, within A4249_RS01600at 303.559 kb on - strand, within A4249_RS01600at 303.559 kb on - strand, within A4249_RS01600at 303.559 kb on - strand, within A4249_RS01600at 303.976 kb on + strand, within A4249_RS01605at 303.977 kb on - strand, within A4249_RS01605at 304.058 kb on - strand, within A4249_RS01605at 304.058 kb on - strand, within A4249_RS01605at 304.058 kb on - strand, within A4249_RS01605at 304.058 kb on - strand, within A4249_RS01605at 304.058 kb on - strand, within A4249_RS01605at 304.252 kb on + strand, within A4249_RS01605at 304.252 kb on + strand, within A4249_RS01605at 304.252 kb on + strand, within A4249_RS01605at 304.252 kb on + strand, within A4249_RS01605at 304.252 kb on + strand, within A4249_RS01605at 304.252 kb on + strand, within A4249_RS01605at 304.253 kb on - strand, within A4249_RS01605at 304.253 kb on - strand, within A4249_RS01605at 304.253 kb on - strand, within A4249_RS01605at 304.545 kb on - strand, within A4249_RS01605at 304.831 kb on + strand, within A4249_RS01605at 304.831 kb on + strand, within A4249_RS01605at 304.831 kb on + strand, within A4249_RS01605at 304.831 kb on + strand, within A4249_RS01605at 304.831 kb on + strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.832 kb on - strand, within A4249_RS01605at 304.966 kb on + strand, within A4249_RS01605at 304.966 kb on + strand, within A4249_RS01605at 304.966 kb on + strand, within A4249_RS01605at 304.966 kb on + strand, within A4249_RS01605at 304.966 kb on + strand, within A4249_RS01605at 304.966 kb on + strand, within A4249_RS01605at 304.966 kb on + strand, within A4249_RS01605at 304.966 kb on + strand, within A4249_RS01605at 304.966 kb on + strand, within A4249_RS01605at 304.967 kb on - strand, within A4249_RS01605at 304.967 kb on - strand, within A4249_RS01605at 304.967 kb on - strand, within A4249_RS01605at 304.967 kb on - strand, within A4249_RS01605at 304.967 kb on - strand, within A4249_RS01605at 304.967 kb on - strand, within A4249_RS01605at 304.967 kb on - strand, within A4249_RS01605at 304.967 kb on - strand, within A4249_RS01605at 305.038 kb on + strand, within A4249_RS01605at 305.038 kb on + strand, within A4249_RS01605at 305.038 kb on + strand, within A4249_RS01605at 305.038 kb on + strand, within A4249_RS01605at 305.038 kb on + strand, within A4249_RS01605at 305.038 kb on + strand, within A4249_RS01605at 305.038 kb on + strand, within A4249_RS01605at 305.038 kb on + strand, within A4249_RS01605at 305.038 kb on + strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.039 kb on - strand, within A4249_RS01605at 305.116 kb on + strand, within A4249_RS01605at 305.116 kb on + strand, within A4249_RS01605at 305.300 kb on - strandat 305.386 kb on + strandat 305.386 kb on + strandat 305.386 kb on + strandat 305.386 kb on + strandat 305.386 kb on + strandat 305.386 kb on + strandat 305.386 kb on + strandat 305.386 kb on + strandat 305.387 kb on - strandat 305.387 kb on - strandat 305.387 kb on - strandat 305.387 kb on - strandat 305.387 kb on - strandat 305.387 kb on - strandat 305.387 kb on - strandat 305.387 kb on - strandat 305.844 kb on + strand, within A4249_RS01610at 305.844 kb on + strand, within A4249_RS01610at 306.046 kb on + strandat 306.046 kb on + strandat 306.047 kb on - strandat 306.145 kb on + strand, within A4249_RS01615at 306.146 kb on - strand, within A4249_RS01615at 306.146 kb on - strand, within A4249_RS01615at 306.298 kb on + strand, within A4249_RS01615at 306.298 kb on + strand, within A4249_RS01615at 306.298 kb on + strand, within A4249_RS01615

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C)
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302,872 + A4249_RS01600 0.25 -0.3
302,872 + A4249_RS01600 0.25 +0.4
302,872 + A4249_RS01600 0.25 +0.5
302,873 - A4249_RS01600 0.25 -0.7
302,873 - A4249_RS01600 0.25 -0.4
302,873 - A4249_RS01600 0.25 +0.2
302,873 - A4249_RS01600 0.25 +0.8
302,934 + A4249_RS01600 0.30 +0.2
302,934 + A4249_RS01600 0.30 +0.8
302,934 + A4249_RS01600 0.30 +0.2
302,934 + A4249_RS01600 0.30 -0.2
302,934 + A4249_RS01600 0.30 -0.7
302,934 + A4249_RS01600 0.30 +0.4
302,934 + A4249_RS01600 0.30 -1.0
302,934 + A4249_RS01600 0.30 -0.5
302,934 + A4249_RS01600 0.30 +0.5
302,935 - A4249_RS01600 0.30 -1.8
302,935 - A4249_RS01600 0.30 -0.3
302,935 - A4249_RS01600 0.30 +0.1
302,935 - A4249_RS01600 0.30 +0.5
302,935 - A4249_RS01600 0.30 +0.3
302,935 - A4249_RS01600 0.30 +0.3
302,935 - A4249_RS01600 0.30 -0.1
302,935 - A4249_RS01600 0.30 +1.4
302,935 - A4249_RS01600 0.30 +0.5
302,935 - A4249_RS01600 0.30 -0.2
303,381 + A4249_RS01600 0.70 +0.1
303,382 - A4249_RS01600 0.70 +0.4
303,382 - A4249_RS01600 0.70 -0.1
303,382 - A4249_RS01600 0.70 +0.1
303,459 + A4249_RS01600 0.77 +0.6
303,459 + A4249_RS01600 0.77 +0.5
303,459 + A4249_RS01600 0.77 +0.5
303,459 + A4249_RS01600 0.77 -0.0
303,460 - A4249_RS01600 0.77 +0.2
303,460 - A4249_RS01600 0.77 +1.0
303,460 - A4249_RS01600 0.77 +0.6
303,460 - A4249_RS01600 0.77 +0.2
303,504 + A4249_RS01600 0.81 +0.3
303,504 + A4249_RS01600 0.81 -0.2
303,504 + A4249_RS01600 0.81 -0.6
303,505 - A4249_RS01600 0.81 -0.6
303,505 - A4249_RS01600 0.81 +0.0
303,505 - A4249_RS01600 0.81 -0.1
303,505 - A4249_RS01600 0.81 -0.3
303,505 - A4249_RS01600 0.81 -0.9
303,558 + A4249_RS01600 0.86 -0.2
303,558 + A4249_RS01600 0.86 +1.3
303,558 + A4249_RS01600 0.86 -0.1
303,558 + A4249_RS01600 0.86 -0.2
303,558 + A4249_RS01600 0.86 -0.3
303,558 + A4249_RS01600 0.86 +1.0
303,559 - A4249_RS01600 0.86 -0.5
303,559 - A4249_RS01600 0.86 -0.2
303,559 - A4249_RS01600 0.86 +0.1
303,559 - A4249_RS01600 0.86 +0.1
303,559 - A4249_RS01600 0.86 +0.5
303,559 - A4249_RS01600 0.86 +0.0
303,559 - A4249_RS01600 0.86 +0.1
303,559 - A4249_RS01600 0.86 -0.5
303,559 - A4249_RS01600 0.86 -0.4
303,976 + A4249_RS01605 0.15 -0.3
303,977 - A4249_RS01605 0.15 +0.2
304,058 - A4249_RS01605 0.20 -0.4
304,058 - A4249_RS01605 0.20 -0.7
304,058 - A4249_RS01605 0.20 +0.6
304,058 - A4249_RS01605 0.20 +0.5
304,058 - A4249_RS01605 0.20 -0.1
304,252 + A4249_RS01605 0.31 +0.5
304,252 + A4249_RS01605 0.31 -0.1
304,252 + A4249_RS01605 0.31 +0.6
304,252 + A4249_RS01605 0.31 +0.5
304,252 + A4249_RS01605 0.31 -0.4
304,252 + A4249_RS01605 0.31 +0.1
304,253 - A4249_RS01605 0.31 -0.5
304,253 - A4249_RS01605 0.31 -0.4
304,253 - A4249_RS01605 0.31 -0.2
304,545 - A4249_RS01605 0.48 +0.1
304,831 + A4249_RS01605 0.65 +0.3
304,831 + A4249_RS01605 0.65 +2.1
304,831 + A4249_RS01605 0.65 -0.1
304,831 + A4249_RS01605 0.65 +0.3
304,831 + A4249_RS01605 0.65 -1.8
304,832 - A4249_RS01605 0.65 +0.2
304,832 - A4249_RS01605 0.65 +0.2
304,832 - A4249_RS01605 0.65 +0.3
304,832 - A4249_RS01605 0.65 -0.8
304,832 - A4249_RS01605 0.65 -0.5
304,832 - A4249_RS01605 0.65 +0.0
304,832 - A4249_RS01605 0.65 +0.4
304,832 - A4249_RS01605 0.65 -1.5
304,832 - A4249_RS01605 0.65 -0.5
304,832 - A4249_RS01605 0.65 +0.7
304,966 + A4249_RS01605 0.73 -0.1
304,966 + A4249_RS01605 0.73 -0.7
304,966 + A4249_RS01605 0.73 -0.1
304,966 + A4249_RS01605 0.73 +0.2
304,966 + A4249_RS01605 0.73 +0.3
304,966 + A4249_RS01605 0.73 -0.4
304,966 + A4249_RS01605 0.73 +0.4
304,966 + A4249_RS01605 0.73 +0.1
304,966 + A4249_RS01605 0.73 +0.2
304,967 - A4249_RS01605 0.73 -0.4
304,967 - A4249_RS01605 0.73 +0.1
304,967 - A4249_RS01605 0.73 +0.1
304,967 - A4249_RS01605 0.73 -0.5
304,967 - A4249_RS01605 0.73 -0.3
304,967 - A4249_RS01605 0.73 -2.4
304,967 - A4249_RS01605 0.73 +0.6
304,967 - A4249_RS01605 0.73 -0.2
305,038 + A4249_RS01605 0.77 +0.1
305,038 + A4249_RS01605 0.77 -1.5
305,038 + A4249_RS01605 0.77 +0.1
305,038 + A4249_RS01605 0.77 +0.4
305,038 + A4249_RS01605 0.77 -0.1
305,038 + A4249_RS01605 0.77 -1.1
305,038 + A4249_RS01605 0.77 -0.2
305,038 + A4249_RS01605 0.77 -0.4
305,038 + A4249_RS01605 0.77 +1.3
305,039 - A4249_RS01605 0.77 +0.5
305,039 - A4249_RS01605 0.77 -0.0
305,039 - A4249_RS01605 0.77 +0.4
305,039 - A4249_RS01605 0.77 +0.2
305,039 - A4249_RS01605 0.77 -1.2
305,039 - A4249_RS01605 0.77 -0.1
305,039 - A4249_RS01605 0.77 +0.5
305,039 - A4249_RS01605 0.77 -0.1
305,039 - A4249_RS01605 0.77 -1.2
305,039 - A4249_RS01605 0.77 +0.5
305,039 - A4249_RS01605 0.77 +0.1
305,116 + A4249_RS01605 0.82 +0.4
305,116 + A4249_RS01605 0.82 -1.5
305,300 - +0.3
305,386 + -0.7
305,386 + +0.8
305,386 + -0.5
305,386 + +0.7
305,386 + +0.5
305,386 + +0.5
305,386 + +0.2
305,386 + +0.5
305,387 - -0.1
305,387 - -0.0
305,387 - +0.5
305,387 - +0.5
305,387 - -0.0
305,387 - +0.4
305,387 - +0.2
305,387 - -0.4
305,844 + A4249_RS01610 0.73 -1.5
305,844 + A4249_RS01610 0.73 +0.1
306,046 + -0.2
306,046 + -0.5
306,047 - +0.2
306,145 + A4249_RS01615 0.20 +0.0
306,146 - A4249_RS01615 0.20 -1.6
306,146 - A4249_RS01615 0.20 -1.2
306,298 + A4249_RS01615 0.50 -0.0
306,298 + A4249_RS01615 0.50 -0.7
306,298 + A4249_RS01615 0.50 -0.0

Or see this region's nucleotide sequence