Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00760 and A4249_RS00765 are separated by 252 nucleotides A4249_RS00765 and A4249_RS00770 are separated by 5 nucleotides A4249_RS00770 and A4249_RS00775 overlap by 4 nucleotides
A4249_RS00760: A4249_RS00760 - carbon starvation CstA family protein, at 142,733 to 144,820
_RS00760
A4249_RS00765: A4249_RS00765 - formate-dependent phosphoribosylglycinamide formyltransferase, at 145,073 to 146,269
_RS00765
A4249_RS00770: A4249_RS00770 - VOC family protein, at 146,275 to 146,679
_RS00770
A4249_RS00775: A4249_RS00775 - alpha/beta hydrolase-fold protein, at 146,676 to 147,515
_RS00775
Position (kb) 145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 144.195 kb on + strand, within A4249_RS00760 at 144.195 kb on + strand, within A4249_RS00760 at 144.195 kb on + strand, within A4249_RS00760 at 144.195 kb on + strand, within A4249_RS00760 at 144.195 kb on + strand, within A4249_RS00760 at 144.195 kb on + strand, within A4249_RS00760 at 144.195 kb on + strand, within A4249_RS00760 at 144.195 kb on + strand, within A4249_RS00760 at 144.195 kb on + strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.196 kb on - strand, within A4249_RS00760 at 144.197 kb on + strand, within A4249_RS00760 at 144.197 kb on + strand, within A4249_RS00760 at 144.197 kb on + strand, within A4249_RS00760 at 144.198 kb on - strand, within A4249_RS00760 at 144.198 kb on - strand, within A4249_RS00760 at 144.198 kb on - strand, within A4249_RS00760 at 144.198 kb on - strand, within A4249_RS00760 at 144.483 kb on + strand, within A4249_RS00760 at 144.483 kb on + strand, within A4249_RS00760 at 144.483 kb on + strand, within A4249_RS00760 at 144.483 kb on + strand, within A4249_RS00760 at 144.484 kb on - strand, within A4249_RS00760 at 144.582 kb on + strand, within A4249_RS00760 at 144.582 kb on + strand, within A4249_RS00760 at 144.582 kb on + strand, within A4249_RS00760 at 144.582 kb on + strand, within A4249_RS00760 at 144.582 kb on + strand, within A4249_RS00760 at 144.582 kb on + strand, within A4249_RS00760 at 144.583 kb on - strand, within A4249_RS00760 at 144.583 kb on - strand, within A4249_RS00760 at 144.583 kb on - strand, within A4249_RS00760 at 144.583 kb on - strand, within A4249_RS00760 at 144.583 kb on - strand, within A4249_RS00760 at 144.583 kb on - strand, within A4249_RS00760 at 144.641 kb on + strand at 144.641 kb on + strand at 144.641 kb on + strand at 144.641 kb on + strand at 144.641 kb on + strand at 144.642 kb on - strand at 144.642 kb on - strand at 144.642 kb on - strand at 144.642 kb on - strand at 144.642 kb on - strand at 144.666 kb on + strand at 144.687 kb on + strand at 144.687 kb on + strand at 144.687 kb on + strand at 144.687 kb on + strand at 144.688 kb on - strand at 144.688 kb on - strand at 144.688 kb on - strand at 144.688 kb on - strand at 144.688 kb on - strand at 144.688 kb on - strand at 144.797 kb on + strand at 144.797 kb on + strand at 144.797 kb on + strand at 144.798 kb on - strand at 144.798 kb on - strand at 144.798 kb on - strand at 144.897 kb on + strand at 145.278 kb on + strand, within A4249_RS00765 at 145.278 kb on + strand, within A4249_RS00765 at 145.278 kb on + strand, within A4249_RS00765 at 145.278 kb on + strand, within A4249_RS00765 at 145.278 kb on + strand, within A4249_RS00765 at 145.278 kb on + strand, within A4249_RS00765 at 145.278 kb on + strand, within A4249_RS00765 at 145.278 kb on + strand, within A4249_RS00765 at 145.278 kb on + strand, within A4249_RS00765 at 145.278 kb on + strand, within A4249_RS00765 at 145.279 kb on - strand, within A4249_RS00765 at 145.279 kb on - strand, within A4249_RS00765 at 145.279 kb on - strand, within A4249_RS00765 at 145.279 kb on - strand, within A4249_RS00765 at 145.279 kb on - strand, within A4249_RS00765 at 145.279 kb on - strand, within A4249_RS00765 at 145.279 kb on - strand, within A4249_RS00765 at 145.279 kb on - strand, within A4249_RS00765 at 145.492 kb on + strand, within A4249_RS00765 at 145.567 kb on - strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.731 kb on + strand, within A4249_RS00765 at 145.732 kb on - strand, within A4249_RS00765 at 145.732 kb on - strand, within A4249_RS00765 at 145.732 kb on - strand, within A4249_RS00765 at 145.732 kb on - strand, within A4249_RS00765 at 145.732 kb on - strand, within A4249_RS00765 at 145.876 kb on - strand, within A4249_RS00765 at 145.876 kb on - strand, within A4249_RS00765 at 145.888 kb on + strand, within A4249_RS00765 at 145.889 kb on - strand, within A4249_RS00765 at 145.889 kb on - strand, within A4249_RS00765 at 145.889 kb on - strand, within A4249_RS00765 at 146.348 kb on + strand, within A4249_RS00770 at 146.348 kb on + strand, within A4249_RS00770 at 146.348 kb on + strand, within A4249_RS00770 at 146.348 kb on + strand, within A4249_RS00770 at 146.348 kb on + strand, within A4249_RS00770 at 146.348 kb on + strand, within A4249_RS00770 at 146.349 kb on - strand, within A4249_RS00770 at 146.349 kb on - strand, within A4249_RS00770 at 146.349 kb on - strand, within A4249_RS00770 at 146.349 kb on - strand, within A4249_RS00770 at 146.349 kb on - strand, within A4249_RS00770 at 146.349 kb on - strand, within A4249_RS00770 at 146.349 kb on - strand, within A4249_RS00770 at 146.414 kb on - strand, within A4249_RS00770 at 146.553 kb on + strand, within A4249_RS00770 at 146.554 kb on - strand, within A4249_RS00770 at 146.554 kb on - strand, within A4249_RS00770 at 146.554 kb on - strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.606 kb on + strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.607 kb on - strand, within A4249_RS00770 at 146.627 kb on + strand, within A4249_RS00770 at 146.627 kb on + strand, within A4249_RS00770 at 146.627 kb on + strand, within A4249_RS00770 at 146.627 kb on + strand, within A4249_RS00770 at 146.627 kb on + strand, within A4249_RS00770 at 146.627 kb on + strand, within A4249_RS00770 at 146.627 kb on + strand, within A4249_RS00770 at 146.627 kb on + strand, within A4249_RS00770 at 146.628 kb on - strand, within A4249_RS00770 at 146.628 kb on - strand, within A4249_RS00770 at 146.628 kb on - strand, within A4249_RS00770 at 146.628 kb on - strand, within A4249_RS00770 at 146.628 kb on - strand, within A4249_RS00770 at 146.628 kb on - strand, within A4249_RS00770 at 146.628 kb on - strand, within A4249_RS00770 at 146.695 kb on + strand at 146.695 kb on + strand at 146.731 kb on + strand at 146.731 kb on + strand at 146.731 kb on + strand at 146.731 kb on + strand at 146.731 kb on + strand at 146.732 kb on - strand at 146.732 kb on - strand at 146.794 kb on + strand, within A4249_RS00775 at 146.794 kb on + strand, within A4249_RS00775 at 146.795 kb on - strand, within A4249_RS00775 at 146.795 kb on - strand, within A4249_RS00775 at 146.795 kb on - strand, within A4249_RS00775 at 146.795 kb on - strand, within A4249_RS00775 at 146.795 kb on - strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.965 kb on + strand, within A4249_RS00775 at 146.966 kb on - strand, within A4249_RS00775 at 146.966 kb on - strand, within A4249_RS00775 at 146.966 kb on - strand, within A4249_RS00775 at 146.966 kb on - strand, within A4249_RS00775 at 147.075 kb on - strand, within A4249_RS00775
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 144,195 + A4249_RS00760 0.70 -0.5 144,195 + A4249_RS00760 0.70 +0.4 144,195 + A4249_RS00760 0.70 +0.2 144,195 + A4249_RS00760 0.70 +0.3 144,195 + A4249_RS00760 0.70 +0.9 144,195 + A4249_RS00760 0.70 +0.3 144,195 + A4249_RS00760 0.70 +0.4 144,195 + A4249_RS00760 0.70 -1.6 144,195 + A4249_RS00760 0.70 -0.4 144,196 - A4249_RS00760 0.70 +0.8 144,196 - A4249_RS00760 0.70 -0.1 144,196 - A4249_RS00760 0.70 +0.7 144,196 - A4249_RS00760 0.70 +0.5 144,196 - A4249_RS00760 0.70 +0.2 144,196 - A4249_RS00760 0.70 +1.8 144,196 - A4249_RS00760 0.70 -2.6 144,196 - A4249_RS00760 0.70 +0.1 144,196 - A4249_RS00760 0.70 +0.0 144,196 - A4249_RS00760 0.70 -1.6 144,196 - A4249_RS00760 0.70 +0.4 144,196 - A4249_RS00760 0.70 -2.8 144,197 + A4249_RS00760 0.70 +0.6 144,197 + A4249_RS00760 0.70 +0.4 144,197 + A4249_RS00760 0.70 +0.4 144,198 - A4249_RS00760 0.70 +0.2 144,198 - A4249_RS00760 0.70 -0.0 144,198 - A4249_RS00760 0.70 -0.2 144,198 - A4249_RS00760 0.70 -0.7 144,483 + A4249_RS00760 0.84 +0.5 144,483 + A4249_RS00760 0.84 +0.1 144,483 + A4249_RS00760 0.84 -2.0 144,483 + A4249_RS00760 0.84 +0.9 144,484 - A4249_RS00760 0.84 +2.8 144,582 + A4249_RS00760 0.89 +0.2 144,582 + A4249_RS00760 0.89 +1.9 144,582 + A4249_RS00760 0.89 -1.2 144,582 + A4249_RS00760 0.89 +0.1 144,582 + A4249_RS00760 0.89 -0.5 144,582 + A4249_RS00760 0.89 -1.2 144,583 - A4249_RS00760 0.89 +0.0 144,583 - A4249_RS00760 0.89 -1.1 144,583 - A4249_RS00760 0.89 +0.2 144,583 - A4249_RS00760 0.89 +0.2 144,583 - A4249_RS00760 0.89 -0.9 144,583 - A4249_RS00760 0.89 +0.4 144,641 + -0.4 144,641 + -0.9 144,641 + +1.0 144,641 + -1.2 144,641 + -1.2 144,642 - -1.0 144,642 - -0.4 144,642 - +0.9 144,642 - +0.9 144,642 - +0.9 144,666 + -0.2 144,687 + +1.6 144,687 + +0.4 144,687 + +1.1 144,687 + -1.1 144,688 - +0.3 144,688 - -1.6 144,688 - -0.3 144,688 - +0.2 144,688 - +1.1 144,688 - +0.1 144,797 + +0.1 144,797 + +0.7 144,797 + +0.4 144,798 - -0.6 144,798 - -0.1 144,798 - -0.1 144,897 + -0.3 145,278 + A4249_RS00765 0.17 +0.2 145,278 + A4249_RS00765 0.17 +1.1 145,278 + A4249_RS00765 0.17 -0.9 145,278 + A4249_RS00765 0.17 -0.2 145,278 + A4249_RS00765 0.17 -0.4 145,278 + A4249_RS00765 0.17 +1.0 145,278 + A4249_RS00765 0.17 +0.5 145,278 + A4249_RS00765 0.17 -0.4 145,278 + A4249_RS00765 0.17 +0.2 145,278 + A4249_RS00765 0.17 -0.7 145,279 - A4249_RS00765 0.17 -0.2 145,279 - A4249_RS00765 0.17 -0.2 145,279 - A4249_RS00765 0.17 -0.7 145,279 - A4249_RS00765 0.17 -0.4 145,279 - A4249_RS00765 0.17 +0.1 145,279 - A4249_RS00765 0.17 +0.6 145,279 - A4249_RS00765 0.17 -0.3 145,279 - A4249_RS00765 0.17 +0.3 145,492 + A4249_RS00765 0.35 -0.5 145,567 - A4249_RS00765 0.41 -0.4 145,731 + A4249_RS00765 0.55 +0.4 145,731 + A4249_RS00765 0.55 +0.3 145,731 + A4249_RS00765 0.55 -0.0 145,731 + A4249_RS00765 0.55 -0.7 145,731 + A4249_RS00765 0.55 +0.3 145,731 + A4249_RS00765 0.55 +0.6 145,731 + A4249_RS00765 0.55 -0.5 145,731 + A4249_RS00765 0.55 -0.2 145,731 + A4249_RS00765 0.55 +0.5 145,731 + A4249_RS00765 0.55 -0.3 145,731 + A4249_RS00765 0.55 -0.3 145,731 + A4249_RS00765 0.55 +0.0 145,732 - A4249_RS00765 0.55 +0.8 145,732 - A4249_RS00765 0.55 +0.2 145,732 - A4249_RS00765 0.55 -0.9 145,732 - A4249_RS00765 0.55 +0.5 145,732 - A4249_RS00765 0.55 -0.4 145,876 - A4249_RS00765 0.67 +0.9 145,876 - A4249_RS00765 0.67 +0.3 145,888 + A4249_RS00765 0.68 -0.6 145,889 - A4249_RS00765 0.68 -1.4 145,889 - A4249_RS00765 0.68 -0.1 145,889 - A4249_RS00765 0.68 -0.3 146,348 + A4249_RS00770 0.18 +0.1 146,348 + A4249_RS00770 0.18 -0.0 146,348 + A4249_RS00770 0.18 +0.4 146,348 + A4249_RS00770 0.18 -1.6 146,348 + A4249_RS00770 0.18 +0.1 146,348 + A4249_RS00770 0.18 -0.3 146,349 - A4249_RS00770 0.18 -0.3 146,349 - A4249_RS00770 0.18 +0.8 146,349 - A4249_RS00770 0.18 -0.3 146,349 - A4249_RS00770 0.18 -0.8 146,349 - A4249_RS00770 0.18 +0.1 146,349 - A4249_RS00770 0.18 -0.1 146,349 - A4249_RS00770 0.18 -0.5 146,414 - A4249_RS00770 0.34 -0.3 146,553 + A4249_RS00770 0.69 -0.6 146,554 - A4249_RS00770 0.69 -0.0 146,554 - A4249_RS00770 0.69 -0.4 146,554 - A4249_RS00770 0.69 +0.2 146,606 + A4249_RS00770 0.82 -0.4 146,606 + A4249_RS00770 0.82 -0.1 146,606 + A4249_RS00770 0.82 +0.2 146,606 + A4249_RS00770 0.82 +0.2 146,606 + A4249_RS00770 0.82 +0.0 146,606 + A4249_RS00770 0.82 -1.1 146,606 + A4249_RS00770 0.82 -1.0 146,606 + A4249_RS00770 0.82 -0.5 146,606 + A4249_RS00770 0.82 +0.4 146,606 + A4249_RS00770 0.82 -1.2 146,606 + A4249_RS00770 0.82 +0.3 146,607 - A4249_RS00770 0.82 +0.5 146,607 - A4249_RS00770 0.82 +0.4 146,607 - A4249_RS00770 0.82 -0.2 146,607 - A4249_RS00770 0.82 +0.2 146,607 - A4249_RS00770 0.82 -0.1 146,607 - A4249_RS00770 0.82 -1.2 146,607 - A4249_RS00770 0.82 -0.8 146,607 - A4249_RS00770 0.82 -0.4 146,607 - A4249_RS00770 0.82 -0.8 146,607 - A4249_RS00770 0.82 -0.9 146,607 - A4249_RS00770 0.82 -0.7 146,607 - A4249_RS00770 0.82 +1.2 146,627 + A4249_RS00770 0.87 +0.8 146,627 + A4249_RS00770 0.87 -1.0 146,627 + A4249_RS00770 0.87 +0.1 146,627 + A4249_RS00770 0.87 +0.5 146,627 + A4249_RS00770 0.87 -0.2 146,627 + A4249_RS00770 0.87 +0.0 146,627 + A4249_RS00770 0.87 -0.5 146,627 + A4249_RS00770 0.87 +0.5 146,628 - A4249_RS00770 0.87 -0.5 146,628 - A4249_RS00770 0.87 +1.4 146,628 - A4249_RS00770 0.87 -0.6 146,628 - A4249_RS00770 0.87 -0.1 146,628 - A4249_RS00770 0.87 -0.0 146,628 - A4249_RS00770 0.87 -0.0 146,628 - A4249_RS00770 0.87 -0.6 146,695 + -0.4 146,695 + -0.1 146,731 + -0.3 146,731 + -1.4 146,731 + -0.4 146,731 + -0.3 146,731 + +0.0 146,732 - -0.9 146,732 - +1.3 146,794 + A4249_RS00775 0.14 -0.4 146,794 + A4249_RS00775 0.14 +0.2 146,795 - A4249_RS00775 0.14 -0.2 146,795 - A4249_RS00775 0.14 +0.1 146,795 - A4249_RS00775 0.14 +0.2 146,795 - A4249_RS00775 0.14 -1.0 146,795 - A4249_RS00775 0.14 -0.1 146,965 + A4249_RS00775 0.34 -0.5 146,965 + A4249_RS00775 0.34 +1.4 146,965 + A4249_RS00775 0.34 +0.8 146,965 + A4249_RS00775 0.34 -0.2 146,965 + A4249_RS00775 0.34 +0.9 146,965 + A4249_RS00775 0.34 +0.9 146,965 + A4249_RS00775 0.34 +0.5 146,965 + A4249_RS00775 0.34 -0.0 146,965 + A4249_RS00775 0.34 -0.6 146,965 + A4249_RS00775 0.34 -0.6 146,966 - A4249_RS00775 0.35 +0.5 146,966 - A4249_RS00775 0.35 +0.4 146,966 - A4249_RS00775 0.35 +0.9 146,966 - A4249_RS00775 0.35 -0.6 147,075 - A4249_RS00775 0.47 -0.7
Or see this region's nucleotide sequence