Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00530 and A4249_RS00535 are separated by 111 nucleotides A4249_RS00535 and A4249_RS16430 are separated by 297 nucleotides
A4249_RS00530: A4249_RS00530 - outer membrane protein transport protein, at 88,016 to 89,380
_RS00530
A4249_RS00535: A4249_RS00535 - DEAD/DEAH box helicase, at 89,492 to 90,967
_RS00535
A4249_RS16430: A4249_RS16430 - hypothetical protein, at 91,265 to 91,825
_RS16430
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1 at 88.511 kb on + strand, within A4249_RS00530 at 88.613 kb on + strand, within A4249_RS00530 at 88.614 kb on - strand, within A4249_RS00530 at 88.737 kb on - strand, within A4249_RS00530 at 88.793 kb on + strand, within A4249_RS00530 at 88.793 kb on + strand, within A4249_RS00530 at 88.830 kb on + strand, within A4249_RS00530 at 88.831 kb on - strand, within A4249_RS00530 at 88.910 kb on + strand, within A4249_RS00530 at 88.910 kb on + strand, within A4249_RS00530 at 88.910 kb on + strand, within A4249_RS00530 at 88.910 kb on + strand, within A4249_RS00530 at 88.911 kb on - strand, within A4249_RS00530 at 88.911 kb on - strand, within A4249_RS00530 at 88.931 kb on + strand, within A4249_RS00530 at 88.932 kb on - strand, within A4249_RS00530 at 89.013 kb on - strand, within A4249_RS00530 at 89.013 kb on - strand, within A4249_RS00530 at 89.045 kb on + strand, within A4249_RS00530 at 89.045 kb on + strand, within A4249_RS00530 at 89.045 kb on + strand, within A4249_RS00530 at 89.045 kb on + strand, within A4249_RS00530 at 89.045 kb on + strand, within A4249_RS00530 at 89.045 kb on + strand, within A4249_RS00530 at 89.045 kb on + strand, within A4249_RS00530 at 89.046 kb on - strand, within A4249_RS00530 at 89.046 kb on - strand, within A4249_RS00530 at 89.046 kb on - strand, within A4249_RS00530 at 89.046 kb on - strand, within A4249_RS00530 at 89.046 kb on - strand, within A4249_RS00530 at 89.081 kb on + strand, within A4249_RS00530 at 89.082 kb on - strand, within A4249_RS00530 at 89.082 kb on - strand, within A4249_RS00530 at 89.123 kb on + strand, within A4249_RS00530 at 89.124 kb on - strand, within A4249_RS00530 at 89.164 kb on + strand, within A4249_RS00530 at 89.164 kb on + strand, within A4249_RS00530 at 89.165 kb on - strand, within A4249_RS00530 at 89.189 kb on + strand, within A4249_RS00530 at 89.189 kb on + strand, within A4249_RS00530 at 89.189 kb on + strand, within A4249_RS00530 at 89.189 kb on + strand, within A4249_RS00530 at 89.190 kb on - strand, within A4249_RS00530 at 89.190 kb on - strand, within A4249_RS00530 at 89.246 kb on + strand at 89.246 kb on + strand at 89.246 kb on + strand at 89.246 kb on + strand at 89.246 kb on + strand at 89.246 kb on + strand at 89.246 kb on + strand at 89.246 kb on + strand at 89.246 kb on + strand at 89.246 kb on + strand at 89.247 kb on - strand at 89.247 kb on - strand at 89.247 kb on - strand at 89.247 kb on - strand at 89.247 kb on - strand at 89.291 kb on + strand at 89.291 kb on + strand at 89.291 kb on + strand at 89.291 kb on + strand at 89.291 kb on + strand at 89.291 kb on + strand at 89.291 kb on + strand at 89.292 kb on - strand at 89.292 kb on - strand at 89.292 kb on - strand at 89.514 kb on + strand at 89.625 kb on + strand at 89.625 kb on + strand at 89.625 kb on + strand at 89.625 kb on + strand at 89.626 kb on - strand at 89.626 kb on - strand at 89.626 kb on - strand at 89.626 kb on - strand at 89.626 kb on - strand at 89.626 kb on - strand at 89.626 kb on - strand at 90.997 kb on - strand at 91.021 kb on + strand at 91.136 kb on + strand at 91.136 kb on + strand at 91.136 kb on + strand at 91.136 kb on + strand at 91.136 kb on + strand at 91.136 kb on + strand at 91.137 kb on - strand at 91.137 kb on - strand at 91.137 kb on - strand at 91.137 kb on - strand at 91.137 kb on - strand at 91.137 kb on - strand at 91.156 kb on + strand at 91.156 kb on + strand at 91.156 kb on + strand at 91.156 kb on + strand at 91.156 kb on + strand at 91.157 kb on - strand at 91.157 kb on - strand at 91.157 kb on - strand at 91.157 kb on - strand at 91.236 kb on + strand at 91.488 kb on + strand, within A4249_RS16430 at 91.488 kb on + strand, within A4249_RS16430 at 91.488 kb on + strand, within A4249_RS16430 at 91.488 kb on + strand, within A4249_RS16430 at 91.489 kb on - strand, within A4249_RS16430 at 91.489 kb on - strand, within A4249_RS16430 at 91.489 kb on - strand, within A4249_RS16430 at 91.501 kb on + strand, within A4249_RS16430 at 91.501 kb on + strand, within A4249_RS16430 at 91.501 kb on + strand, within A4249_RS16430 at 91.502 kb on - strand, within A4249_RS16430 at 91.502 kb on - strand, within A4249_RS16430 at 91.502 kb on - strand, within A4249_RS16430 at 91.502 kb on - strand, within A4249_RS16430 at 91.615 kb on + strand, within A4249_RS16430 at 91.615 kb on + strand, within A4249_RS16430 at 91.616 kb on - strand, within A4249_RS16430 at 91.722 kb on + strand, within A4249_RS16430 at 91.722 kb on + strand, within A4249_RS16430 at 91.723 kb on - strand, within A4249_RS16430 at 91.723 kb on - strand, within A4249_RS16430 at 91.811 kb on + strand at 91.811 kb on + strand at 91.811 kb on + strand at 91.811 kb on + strand at 91.811 kb on + strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.812 kb on - strand at 91.966 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 88,511 + A4249_RS00530 0.36 +0.5 88,613 + A4249_RS00530 0.44 +0.2 88,614 - A4249_RS00530 0.44 -0.4 88,737 - A4249_RS00530 0.53 +0.4 88,793 + A4249_RS00530 0.57 -0.4 88,793 + A4249_RS00530 0.57 +0.2 88,830 + A4249_RS00530 0.60 +1.4 88,831 - A4249_RS00530 0.60 +0.2 88,910 + A4249_RS00530 0.65 +0.2 88,910 + A4249_RS00530 0.65 +0.5 88,910 + A4249_RS00530 0.65 +1.1 88,910 + A4249_RS00530 0.65 +0.4 88,911 - A4249_RS00530 0.66 -1.4 88,911 - A4249_RS00530 0.66 -0.2 88,931 + A4249_RS00530 0.67 +0.4 88,932 - A4249_RS00530 0.67 +1.0 89,013 - A4249_RS00530 0.73 +1.2 89,013 - A4249_RS00530 0.73 -0.1 89,045 + A4249_RS00530 0.75 +1.2 89,045 + A4249_RS00530 0.75 +0.1 89,045 + A4249_RS00530 0.75 +0.8 89,045 + A4249_RS00530 0.75 +0.1 89,045 + A4249_RS00530 0.75 +1.1 89,045 + A4249_RS00530 0.75 +1.6 89,045 + A4249_RS00530 0.75 -0.6 89,046 - A4249_RS00530 0.75 +0.5 89,046 - A4249_RS00530 0.75 +1.6 89,046 - A4249_RS00530 0.75 +0.3 89,046 - A4249_RS00530 0.75 +0.6 89,046 - A4249_RS00530 0.75 -0.4 89,081 + A4249_RS00530 0.78 -0.1 89,082 - A4249_RS00530 0.78 -0.3 89,082 - A4249_RS00530 0.78 +0.8 89,123 + A4249_RS00530 0.81 +0.7 89,124 - A4249_RS00530 0.81 +0.1 89,164 + A4249_RS00530 0.84 +1.3 89,164 + A4249_RS00530 0.84 +0.6 89,165 - A4249_RS00530 0.84 +0.1 89,189 + A4249_RS00530 0.86 +0.7 89,189 + A4249_RS00530 0.86 +0.2 89,189 + A4249_RS00530 0.86 +0.5 89,189 + A4249_RS00530 0.86 +0.2 89,190 - A4249_RS00530 0.86 +0.7 89,190 - A4249_RS00530 0.86 -0.2 89,246 + -2.1 89,246 + -0.0 89,246 + +0.4 89,246 + +0.9 89,246 + -0.8 89,246 + +0.3 89,246 + -0.6 89,246 + +0.4 89,246 + -0.9 89,246 + -0.1 89,247 - +0.3 89,247 - -0.2 89,247 - +0.1 89,247 - -1.0 89,247 - -0.1 89,291 + -0.4 89,291 + +0.7 89,291 + -1.9 89,291 + -0.1 89,291 + -0.0 89,291 + +0.0 89,291 + +0.2 89,292 - +0.9 89,292 - +0.9 89,292 - -0.1 89,514 + +0.2 89,625 + -0.3 89,625 + +0.5 89,625 + +0.7 89,625 + -1.1 89,626 - -0.6 89,626 - +0.3 89,626 - +0.3 89,626 - -0.4 89,626 - -0.5 89,626 - -0.4 89,626 - +0.1 90,997 - -0.2 91,021 + -0.5 91,136 + -0.4 91,136 + -0.3 91,136 + -0.4 91,136 + -1.2 91,136 + +0.3 91,136 + -0.5 91,137 - -0.2 91,137 - +0.1 91,137 - +0.6 91,137 - -1.0 91,137 - +1.2 91,137 - +0.0 91,156 + -1.2 91,156 + +0.7 91,156 + +0.4 91,156 + +0.7 91,156 + +0.0 91,157 - +0.3 91,157 - -0.6 91,157 - +0.3 91,157 - +0.6 91,236 + -1.8 91,488 + A4249_RS16430 0.40 -2.0 91,488 + A4249_RS16430 0.40 +0.2 91,488 + A4249_RS16430 0.40 +0.3 91,488 + A4249_RS16430 0.40 -0.1 91,489 - A4249_RS16430 0.40 -0.3 91,489 - A4249_RS16430 0.40 +0.1 91,489 - A4249_RS16430 0.40 +0.0 91,501 + A4249_RS16430 0.42 +0.7 91,501 + A4249_RS16430 0.42 +0.9 91,501 + A4249_RS16430 0.42 +0.0 91,502 - A4249_RS16430 0.42 -0.0 91,502 - A4249_RS16430 0.42 -0.1 91,502 - A4249_RS16430 0.42 -0.1 91,502 - A4249_RS16430 0.42 -0.9 91,615 + A4249_RS16430 0.62 -0.1 91,615 + A4249_RS16430 0.62 +0.8 91,616 - A4249_RS16430 0.63 +0.2 91,722 + A4249_RS16430 0.81 +0.4 91,722 + A4249_RS16430 0.81 +0.7 91,723 - A4249_RS16430 0.82 -1.9 91,723 - A4249_RS16430 0.82 -1.8 91,811 + +1.5 91,811 + +0.4 91,811 + +1.2 91,811 + -0.2 91,811 + -0.3 91,812 - -0.6 91,812 - -0.1 91,812 - -0.7 91,812 - +0.8 91,812 - -0.0 91,812 - -0.2 91,812 - -1.3 91,812 - -0.3 91,812 - +0.2 91,812 - -0.2 91,812 - +0.3 91,812 - -0.1 91,812 - -0.0 91,966 + -1.5
Or see this region's nucleotide sequence