Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00440 and A4249_RS00445 are separated by 107 nucleotides A4249_RS00445 and A4249_RS00450 are separated by 94 nucleotides A4249_RS00450 and A4249_RS00455 overlap by 4 nucleotides A4249_RS00455 and A4249_RS00460 are separated by 250 nucleotides
A4249_RS00440: A4249_RS00440 - hypothetical protein, at 74,349 to 74,573
_RS00440
A4249_RS00445: A4249_RS00445 - superoxide dismutase, at 74,681 to 75,292
_RS00445
A4249_RS00450: A4249_RS00450 - MBL fold metallo-hydrolase, at 75,387 to 76,325
_RS00450
A4249_RS00455: A4249_RS00455 - hypothetical protein, at 76,322 to 76,543
_RS00455
A4249_RS00460: A4249_RS00460 - 30S ribosomal protein S4, at 76,794 to 77,411
_RS00460
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1 at 74.406 kb on + strand, within A4249_RS00440 at 74.407 kb on - strand, within A4249_RS00440 at 74.588 kb on + strand at 74.588 kb on + strand at 74.588 kb on + strand at 74.589 kb on - strand at 74.589 kb on - strand at 74.639 kb on + strand at 74.639 kb on + strand at 74.639 kb on + strand at 74.639 kb on + strand at 74.639 kb on + strand at 75.290 kb on + strand at 75.290 kb on + strand at 75.290 kb on + strand at 75.290 kb on + strand at 75.290 kb on + strand at 75.290 kb on + strand at 75.291 kb on - strand at 75.300 kb on - strand at 75.440 kb on + strand at 75.492 kb on - strand, within A4249_RS00450 at 75.528 kb on + strand, within A4249_RS00450 at 75.528 kb on + strand, within A4249_RS00450 at 75.529 kb on - strand, within A4249_RS00450 at 75.529 kb on - strand, within A4249_RS00450 at 75.881 kb on + strand, within A4249_RS00450 at 75.881 kb on + strand, within A4249_RS00450 at 75.882 kb on - strand, within A4249_RS00450 at 76.038 kb on - strand, within A4249_RS00450 at 76.057 kb on - strand, within A4249_RS00450 at 76.089 kb on + strand, within A4249_RS00450 at 76.089 kb on + strand, within A4249_RS00450 at 76.090 kb on - strand, within A4249_RS00450 at 76.090 kb on - strand, within A4249_RS00450 at 76.090 kb on - strand, within A4249_RS00450 at 76.152 kb on + strand, within A4249_RS00450 at 76.153 kb on - strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.230 kb on + strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.231 kb on - strand, within A4249_RS00450 at 76.236 kb on + strand at 76.236 kb on + strand at 76.237 kb on - strand at 76.237 kb on - strand at 76.237 kb on - strand at 76.237 kb on - strand at 76.323 kb on + strand at 76.323 kb on + strand at 76.323 kb on + strand at 76.323 kb on + strand at 76.323 kb on + strand at 76.323 kb on + strand at 76.323 kb on + strand at 76.324 kb on - strand at 76.626 kb on + strand at 76.626 kb on + strand at 76.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 74,406 + A4249_RS00440 0.25 +0.4 74,407 - A4249_RS00440 0.26 +0.4 74,588 + +1.0 74,588 + +0.1 74,588 + -0.6 74,589 - +0.4 74,589 - -0.4 74,639 + +1.0 74,639 + +1.6 74,639 + -2.2 74,639 + -0.2 74,639 + -2.0 75,290 + -2.2 75,290 + -0.4 75,290 + +0.3 75,290 + -0.2 75,290 + -0.4 75,290 + +0.7 75,291 - +0.9 75,300 - +0.5 75,440 + -0.3 75,492 - A4249_RS00450 0.11 +0.1 75,528 + A4249_RS00450 0.15 +0.2 75,528 + A4249_RS00450 0.15 +0.4 75,529 - A4249_RS00450 0.15 -0.3 75,529 - A4249_RS00450 0.15 +0.0 75,881 + A4249_RS00450 0.53 +0.7 75,881 + A4249_RS00450 0.53 -0.1 75,882 - A4249_RS00450 0.53 -0.1 76,038 - A4249_RS00450 0.69 -0.7 76,057 - A4249_RS00450 0.71 +0.0 76,089 + A4249_RS00450 0.75 -0.3 76,089 + A4249_RS00450 0.75 +0.2 76,090 - A4249_RS00450 0.75 +0.5 76,090 - A4249_RS00450 0.75 -0.4 76,090 - A4249_RS00450 0.75 -0.3 76,152 + A4249_RS00450 0.81 -0.3 76,153 - A4249_RS00450 0.82 +0.3 76,230 + A4249_RS00450 0.90 -1.4 76,230 + A4249_RS00450 0.90 +0.3 76,230 + A4249_RS00450 0.90 +0.1 76,230 + A4249_RS00450 0.90 +0.3 76,230 + A4249_RS00450 0.90 +0.0 76,230 + A4249_RS00450 0.90 -0.1 76,230 + A4249_RS00450 0.90 +0.0 76,230 + A4249_RS00450 0.90 +0.1 76,230 + A4249_RS00450 0.90 +0.1 76,230 + A4249_RS00450 0.90 -0.2 76,230 + A4249_RS00450 0.90 -0.8 76,231 - A4249_RS00450 0.90 -0.0 76,231 - A4249_RS00450 0.90 +0.1 76,231 - A4249_RS00450 0.90 +0.0 76,231 - A4249_RS00450 0.90 -0.2 76,231 - A4249_RS00450 0.90 +0.2 76,231 - A4249_RS00450 0.90 -0.1 76,231 - A4249_RS00450 0.90 -0.1 76,231 - A4249_RS00450 0.90 +0.6 76,231 - A4249_RS00450 0.90 -0.7 76,231 - A4249_RS00450 0.90 -1.2 76,231 - A4249_RS00450 0.90 -0.6 76,231 - A4249_RS00450 0.90 -0.6 76,231 - A4249_RS00450 0.90 -0.9 76,231 - A4249_RS00450 0.90 -0.3 76,231 - A4249_RS00450 0.90 +0.0 76,231 - A4249_RS00450 0.90 -0.6 76,231 - A4249_RS00450 0.90 -0.1 76,231 - A4249_RS00450 0.90 -0.1 76,231 - A4249_RS00450 0.90 +0.2 76,231 - A4249_RS00450 0.90 -0.6 76,231 - A4249_RS00450 0.90 -0.1 76,231 - A4249_RS00450 0.90 -0.8 76,236 + -0.5 76,236 + -0.6 76,237 - +0.7 76,237 - -0.5 76,237 - +1.2 76,237 - +0.4 76,323 + -0.6 76,323 + -0.3 76,323 + -0.6 76,323 + -0.1 76,323 + +0.4 76,323 + -0.2 76,323 + -0.3 76,324 - +0.8 76,626 + -1.0 76,626 + -1.0 76,627 - +1.3
Or see this region's nucleotide sequence