Experiment: Cytosine 0.9 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00350 and A4249_RS00355 overlap by 4 nucleotides A4249_RS00355 and A4249_RS00360 overlap by 4 nucleotides A4249_RS00360 and A4249_RS00365 are separated by 43 nucleotides A4249_RS00365 and A4249_RS00370 are separated by 46 nucleotides
A4249_RS00350: A4249_RS00350 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 60,025 to 60,756
_RS00350
A4249_RS00355: A4249_RS00355 - Txe/YoeB family addiction module toxin, at 60,753 to 61,013
_RS00355
A4249_RS00360: A4249_RS00360 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 61,010 to 61,267
_RS00360
A4249_RS00365: A4249_RS00365 - hypothetical protein, at 61,311 to 61,526
_RS00365
A4249_RS00370: A4249_RS00370 - acyl-CoA dehydrogenase family protein, at 61,573 to 62,736
_RS00370
Position (kb) 61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 60.026 kb on + strand at 60.026 kb on + strand at 60.026 kb on + strand at 60.026 kb on + strand at 60.026 kb on + strand at 60.026 kb on + strand at 60.026 kb on + strand at 60.026 kb on + strand at 60.026 kb on + strand at 60.026 kb on + strand at 60.026 kb on + strand at 60.027 kb on - strand at 60.027 kb on - strand at 60.027 kb on - strand at 60.027 kb on - strand at 60.027 kb on - strand at 60.027 kb on - strand at 60.027 kb on - strand at 60.683 kb on + strand at 60.684 kb on - strand at 60.743 kb on + strand at 60.743 kb on + strand at 60.744 kb on - strand at 60.744 kb on - strand at 60.744 kb on - strand at 60.744 kb on - strand at 60.744 kb on - strand at 60.744 kb on - strand at 60.763 kb on + strand at 60.763 kb on + strand at 60.812 kb on - strand, within A4249_RS00355 at 60.976 kb on + strand, within A4249_RS00355 at 60.976 kb on + strand, within A4249_RS00355 at 60.976 kb on + strand, within A4249_RS00355 at 60.976 kb on + strand, within A4249_RS00355 at 60.976 kb on + strand, within A4249_RS00355 at 60.977 kb on - strand, within A4249_RS00355 at 60.977 kb on - strand, within A4249_RS00355 at 60.977 kb on - strand, within A4249_RS00355 at 60.977 kb on - strand, within A4249_RS00355 at 60.977 kb on - strand, within A4249_RS00355 at 60.977 kb on - strand, within A4249_RS00355 at 60.977 kb on - strand, within A4249_RS00355 at 60.977 kb on - strand, within A4249_RS00355 at 60.991 kb on + strand at 60.992 kb on - strand at 61.107 kb on + strand, within A4249_RS00360 at 61.107 kb on + strand, within A4249_RS00360 at 61.107 kb on + strand, within A4249_RS00360 at 61.191 kb on + strand, within A4249_RS00360 at 61.191 kb on + strand, within A4249_RS00360 at 61.191 kb on + strand, within A4249_RS00360 at 61.192 kb on - strand, within A4249_RS00360 at 61.192 kb on - strand, within A4249_RS00360 at 61.192 kb on - strand, within A4249_RS00360 at 61.192 kb on - strand, within A4249_RS00360 at 61.192 kb on - strand, within A4249_RS00360 at 61.287 kb on - strand at 61.312 kb on + strand at 61.312 kb on + strand at 61.312 kb on + strand at 61.312 kb on + strand at 61.313 kb on - strand at 61.374 kb on + strand, within A4249_RS00365 at 61.374 kb on + strand, within A4249_RS00365 at 61.374 kb on + strand, within A4249_RS00365 at 61.374 kb on + strand, within A4249_RS00365 at 61.374 kb on + strand, within A4249_RS00365 at 61.374 kb on + strand, within A4249_RS00365 at 61.375 kb on - strand, within A4249_RS00365 at 61.375 kb on - strand, within A4249_RS00365 at 61.375 kb on - strand, within A4249_RS00365 at 61.375 kb on - strand, within A4249_RS00365 at 61.375 kb on - strand, within A4249_RS00365 at 61.375 kb on - strand, within A4249_RS00365 at 61.398 kb on + strand, within A4249_RS00365 at 61.398 kb on + strand, within A4249_RS00365 at 61.398 kb on + strand, within A4249_RS00365 at 61.398 kb on + strand, within A4249_RS00365 at 61.399 kb on - strand, within A4249_RS00365 at 61.399 kb on - strand, within A4249_RS00365 at 61.399 kb on - strand, within A4249_RS00365 at 61.399 kb on - strand, within A4249_RS00365 at 61.399 kb on - strand, within A4249_RS00365 at 61.574 kb on + strand at 61.575 kb on - strand at 61.623 kb on - strand at 61.623 kb on - strand at 61.649 kb on + strand at 61.649 kb on + strand at 61.649 kb on + strand at 61.649 kb on + strand at 61.650 kb on - strand at 61.650 kb on - strand at 61.650 kb on - strand at 61.667 kb on + strand at 61.676 kb on + strand at 61.677 kb on + strand at 61.677 kb on + strand at 61.677 kb on + strand at 61.677 kb on + strand at 61.677 kb on + strand at 61.677 kb on + strand at 61.677 kb on + strand at 61.677 kb on + strand at 61.677 kb on + strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.680 kb on - strand at 61.680 kb on - strand at 61.680 kb on - strand at 61.680 kb on - strand at 61.680 kb on - strand at 61.680 kb on - strand at 61.680 kb on - strand at 61.680 kb on - strand at 61.680 kb on - strand at 61.686 kb on - strand at 61.745 kb on + strand, within A4249_RS00370 at 61.745 kb on + strand, within A4249_RS00370 at 61.745 kb on + strand, within A4249_RS00370 at 61.745 kb on + strand, within A4249_RS00370 at 61.745 kb on + strand, within A4249_RS00370 at 61.745 kb on + strand, within A4249_RS00370 at 61.745 kb on + strand, within A4249_RS00370 at 61.745 kb on + strand, within A4249_RS00370 at 61.746 kb on - strand, within A4249_RS00370 at 61.746 kb on - strand, within A4249_RS00370 at 61.746 kb on - strand, within A4249_RS00370 at 61.746 kb on - strand, within A4249_RS00370 at 61.746 kb on - strand, within A4249_RS00370 at 61.746 kb on - strand, within A4249_RS00370 at 61.746 kb on - strand, within A4249_RS00370 at 61.866 kb on + strand, within A4249_RS00370 at 61.866 kb on + strand, within A4249_RS00370 at 61.867 kb on - strand, within A4249_RS00370 at 61.867 kb on - strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.902 kb on + strand, within A4249_RS00370 at 61.903 kb on - strand, within A4249_RS00370
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine 0.9 mM (C) remove 60,026 + +0.1 60,026 + +0.8 60,026 + -1.0 60,026 + -0.4 60,026 + -0.7 60,026 + -0.3 60,026 + +0.1 60,026 + +0.4 60,026 + +0.2 60,026 + -2.8 60,026 + -0.1 60,027 - +2.3 60,027 - +0.8 60,027 - +0.0 60,027 - +0.8 60,027 - +0.3 60,027 - -0.2 60,027 - +0.0 60,683 + +0.0 60,684 - -0.7 60,743 + -1.3 60,743 + +0.1 60,744 - -0.6 60,744 - +0.4 60,744 - +0.1 60,744 - +0.6 60,744 - -0.5 60,744 - -0.0 60,763 + -0.3 60,763 + +0.2 60,812 - A4249_RS00355 0.23 -0.2 60,976 + A4249_RS00355 0.85 -0.8 60,976 + A4249_RS00355 0.85 +0.1 60,976 + A4249_RS00355 0.85 -0.1 60,976 + A4249_RS00355 0.85 -0.6 60,976 + A4249_RS00355 0.85 -0.5 60,977 - A4249_RS00355 0.86 -0.0 60,977 - A4249_RS00355 0.86 -0.3 60,977 - A4249_RS00355 0.86 +0.0 60,977 - A4249_RS00355 0.86 +0.9 60,977 - A4249_RS00355 0.86 -0.1 60,977 - A4249_RS00355 0.86 +0.1 60,977 - A4249_RS00355 0.86 -0.1 60,977 - A4249_RS00355 0.86 -0.0 60,991 + +0.5 60,992 - -0.5 61,107 + A4249_RS00360 0.38 -2.1 61,107 + A4249_RS00360 0.38 -0.2 61,107 + A4249_RS00360 0.38 -0.1 61,191 + A4249_RS00360 0.70 -1.3 61,191 + A4249_RS00360 0.70 -0.3 61,191 + A4249_RS00360 0.70 +0.1 61,192 - A4249_RS00360 0.71 -0.8 61,192 - A4249_RS00360 0.71 -0.6 61,192 - A4249_RS00360 0.71 +0.0 61,192 - A4249_RS00360 0.71 +0.4 61,192 - A4249_RS00360 0.71 +0.1 61,287 - +0.3 61,312 + +0.6 61,312 + +0.6 61,312 + +0.3 61,312 + +0.3 61,313 - -1.3 61,374 + A4249_RS00365 0.29 -1.0 61,374 + A4249_RS00365 0.29 -0.1 61,374 + A4249_RS00365 0.29 -1.0 61,374 + A4249_RS00365 0.29 +0.3 61,374 + A4249_RS00365 0.29 +0.6 61,374 + A4249_RS00365 0.29 +1.5 61,375 - A4249_RS00365 0.30 +0.7 61,375 - A4249_RS00365 0.30 -1.2 61,375 - A4249_RS00365 0.30 -0.0 61,375 - A4249_RS00365 0.30 -0.8 61,375 - A4249_RS00365 0.30 -0.4 61,375 - A4249_RS00365 0.30 +0.3 61,398 + A4249_RS00365 0.40 -0.1 61,398 + A4249_RS00365 0.40 -1.0 61,398 + A4249_RS00365 0.40 -0.3 61,398 + A4249_RS00365 0.40 -0.3 61,399 - A4249_RS00365 0.41 -0.2 61,399 - A4249_RS00365 0.41 -0.5 61,399 - A4249_RS00365 0.41 +1.4 61,399 - A4249_RS00365 0.41 -0.2 61,399 - A4249_RS00365 0.41 -0.6 61,574 + +0.2 61,575 - -0.4 61,623 - -3.0 61,623 - -0.1 61,649 + -1.4 61,649 + +0.0 61,649 + +0.6 61,649 + +0.1 61,650 - -0.0 61,650 - +0.0 61,650 - -0.0 61,667 + +0.0 61,676 + -0.5 61,677 + -0.8 61,677 + -0.0 61,677 + +0.4 61,677 + -0.3 61,677 + -0.1 61,677 + -2.4 61,677 + -1.8 61,677 + +0.9 61,677 + -1.1 61,678 - +0.3 61,678 - -0.6 61,678 - +1.0 61,678 - -1.6 61,678 - +0.3 61,678 - -0.3 61,678 - +0.4 61,678 - -0.4 61,678 - -0.4 61,679 + -0.1 61,679 + -0.2 61,679 + +0.2 61,679 + +1.2 61,679 + +0.0 61,680 - +0.8 61,680 - -1.0 61,680 - +0.9 61,680 - -0.9 61,680 - +1.4 61,680 - -0.1 61,680 - -0.3 61,680 - -0.8 61,680 - +0.5 61,686 - +0.0 61,745 + A4249_RS00370 0.15 +1.5 61,745 + A4249_RS00370 0.15 +1.1 61,745 + A4249_RS00370 0.15 -0.2 61,745 + A4249_RS00370 0.15 +0.0 61,745 + A4249_RS00370 0.15 -1.2 61,745 + A4249_RS00370 0.15 -0.5 61,745 + A4249_RS00370 0.15 -0.1 61,745 + A4249_RS00370 0.15 -0.3 61,746 - A4249_RS00370 0.15 +0.2 61,746 - A4249_RS00370 0.15 +0.3 61,746 - A4249_RS00370 0.15 +1.0 61,746 - A4249_RS00370 0.15 +0.9 61,746 - A4249_RS00370 0.15 -0.7 61,746 - A4249_RS00370 0.15 -1.3 61,746 - A4249_RS00370 0.15 +0.2 61,866 + A4249_RS00370 0.25 +0.8 61,866 + A4249_RS00370 0.25 -0.3 61,867 - A4249_RS00370 0.25 +1.0 61,867 - A4249_RS00370 0.25 +0.6 61,902 + A4249_RS00370 0.28 +0.4 61,902 + A4249_RS00370 0.28 +0.2 61,902 + A4249_RS00370 0.28 -0.8 61,902 + A4249_RS00370 0.28 +0.0 61,902 + A4249_RS00370 0.28 -0.4 61,902 + A4249_RS00370 0.28 +0.6 61,902 + A4249_RS00370 0.28 -1.2 61,902 + A4249_RS00370 0.28 +0.4 61,902 + A4249_RS00370 0.28 +0.4 61,902 + A4249_RS00370 0.28 +0.2 61,902 + A4249_RS00370 0.28 -0.1 61,903 - A4249_RS00370 0.28 +0.5
Or see this region's nucleotide sequence