Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS17000

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00055 and A4249_RS00060 are separated by 22 nucleotidesA4249_RS00060 and A4249_RS17000 are separated by 103 nucleotidesA4249_RS17000 and A4249_RS00065 are separated by 340 nucleotidesA4249_RS00065 and A4249_RS00070 overlap by 4 nucleotidesA4249_RS00070 and A4249_RS00075 are separated by 37 nucleotides A4249_RS00055: A4249_RS00055 - methyltransferase, at 9,793 to 10,443 _RS00055 A4249_RS00060: A4249_RS00060 - fatty acid desaturase, at 10,466 to 11,038 _RS00060 A4249_RS17000: A4249_RS17000 - hypothetical protein, at 11,142 to 11,201 _RS17000 A4249_RS00065: A4249_RS00065 - hypothetical protein, at 11,542 to 11,949 _RS00065 A4249_RS00070: A4249_RS00070 - helix-turn-helix transcriptional regulator, at 11,946 to 12,146 _RS00070 A4249_RS00075: A4249_RS00075 - alpha/beta hydrolase, at 12,184 to 13,131 _RS00075 Position (kb) 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 10.457 kb on + strandat 10.458 kb on - strandat 10.458 kb on - strandat 10.481 kb on - strandat 10.603 kb on - strand, within A4249_RS00060at 10.603 kb on - strand, within A4249_RS00060at 10.717 kb on + strand, within A4249_RS00060at 10.861 kb on - strand, within A4249_RS00060at 10.861 kb on - strand, within A4249_RS00060at 10.861 kb on - strand, within A4249_RS00060at 11.033 kb on + strandat 11.089 kb on + strandat 11.089 kb on + strandat 11.089 kb on + strandat 11.090 kb on - strandat 11.098 kb on + strandat 11.133 kb on + strandat 11.280 kb on + strandat 11.346 kb on + strandat 11.347 kb on - strandat 11.347 kb on - strandat 11.347 kb on - strandat 11.353 kb on + strandat 11.354 kb on - strandat 11.541 kb on + strandat 11.542 kb on - strandat 11.584 kb on + strand, within A4249_RS00065at 11.584 kb on + strand, within A4249_RS00065at 11.595 kb on + strand, within A4249_RS00065at 11.595 kb on + strand, within A4249_RS00065at 11.595 kb on + strand, within A4249_RS00065at 11.596 kb on - strand, within A4249_RS00065at 11.596 kb on - strand, within A4249_RS00065at 11.596 kb on - strand, within A4249_RS00065at 11.617 kb on + strand, within A4249_RS00065at 11.617 kb on + strand, within A4249_RS00065at 11.617 kb on + strand, within A4249_RS00065at 11.617 kb on + strand, within A4249_RS00065at 11.618 kb on - strand, within A4249_RS00065at 11.618 kb on - strand, within A4249_RS00065at 11.618 kb on - strand, within A4249_RS00065at 11.618 kb on - strand, within A4249_RS00065at 11.618 kb on - strand, within A4249_RS00065at 11.631 kb on + strand, within A4249_RS00065at 11.673 kb on + strand, within A4249_RS00065at 11.673 kb on + strand, within A4249_RS00065at 11.674 kb on - strand, within A4249_RS00065at 11.871 kb on + strand, within A4249_RS00065at 11.871 kb on + strand, within A4249_RS00065at 11.871 kb on + strand, within A4249_RS00065at 11.872 kb on - strand, within A4249_RS00065at 11.911 kb on + strandat 11.911 kb on + strandat 11.911 kb on + strandat 11.911 kb on + strandat 11.911 kb on + strandat 11.912 kb on - strandat 11.912 kb on - strandat 11.912 kb on - strandat 11.912 kb on - strandat 11.912 kb on - strandat 11.912 kb on - strandat 11.912 kb on - strandat 11.912 kb on - strandat 12.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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10,457 + -0.5
10,458 - -1.0
10,458 - -0.9
10,481 - +0.4
10,603 - A4249_RS00060 0.24 -0.4
10,603 - A4249_RS00060 0.24 +0.3
10,717 + A4249_RS00060 0.44 +0.5
10,861 - A4249_RS00060 0.69 +1.7
10,861 - A4249_RS00060 0.69 -0.2
10,861 - A4249_RS00060 0.69 -0.8
11,033 + +0.3
11,089 + +0.9
11,089 + +0.7
11,089 + +0.4
11,090 - +0.2
11,098 + +0.6
11,133 + +0.4
11,280 + +0.2
11,346 + +0.4
11,347 - +0.6
11,347 - -0.3
11,347 - -0.4
11,353 + -0.4
11,354 - -0.2
11,541 + -0.2
11,542 - -0.6
11,584 + A4249_RS00065 0.10 +2.2
11,584 + A4249_RS00065 0.10 -0.5
11,595 + A4249_RS00065 0.13 -0.9
11,595 + A4249_RS00065 0.13 -1.1
11,595 + A4249_RS00065 0.13 -0.6
11,596 - A4249_RS00065 0.13 +0.2
11,596 - A4249_RS00065 0.13 -1.1
11,596 - A4249_RS00065 0.13 -0.0
11,617 + A4249_RS00065 0.18 +0.0
11,617 + A4249_RS00065 0.18 +0.3
11,617 + A4249_RS00065 0.18 -1.1
11,617 + A4249_RS00065 0.18 -0.9
11,618 - A4249_RS00065 0.19 -0.2
11,618 - A4249_RS00065 0.19 -0.3
11,618 - A4249_RS00065 0.19 -1.8
11,618 - A4249_RS00065 0.19 +1.7
11,618 - A4249_RS00065 0.19 -0.1
11,631 + A4249_RS00065 0.22 -0.6
11,673 + A4249_RS00065 0.32 -1.1
11,673 + A4249_RS00065 0.32 -0.4
11,674 - A4249_RS00065 0.32 +0.4
11,871 + A4249_RS00065 0.81 -0.6
11,871 + A4249_RS00065 0.81 -0.3
11,871 + A4249_RS00065 0.81 -1.1
11,872 - A4249_RS00065 0.81 -1.8
11,911 + -1.1
11,911 + -0.2
11,911 + +0.1
11,911 + -1.4
11,911 + +0.2
11,912 - +0.1
11,912 - -0.4
11,912 - +0.6
11,912 - +0.0
11,912 - +0.7
11,912 - +2.2
11,912 - +0.3
11,912 - +0.7
12,168 - -1.8

Or see this region's nucleotide sequence