Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15590

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15580 and A4249_RS15585 are separated by 15 nucleotidesA4249_RS15585 and A4249_RS15590 overlap by 4 nucleotidesA4249_RS15590 and A4249_RS15595 are separated by 2 nucleotidesA4249_RS15595 and A4249_RS15600 are separated by 4 nucleotidesA4249_RS15600 and A4249_RS15605 overlap by 4 nucleotides A4249_RS15580: A4249_RS15580 - chemotaxis response regulator protein-glutamate methylesterase, at 3,154,485 to 3,155,522 _RS15580 A4249_RS15585: A4249_RS15585 - response regulator, at 3,155,538 to 3,155,927 _RS15585 A4249_RS15590: A4249_RS15590 - chemotaxis protein CheD, at 3,155,924 to 3,156,466 _RS15590 A4249_RS15595: A4249_RS15595 - hypothetical protein, at 3,156,469 to 3,156,813 _RS15595 A4249_RS15600: A4249_RS15600 - response regulator, at 3,156,818 to 3,157,408 _RS15600 A4249_RS15605: A4249_RS15605 - hypothetical protein, at 3,157,405 to 3,157,884 _RS15605 Position (kb) 3155 3156 3157Strain fitness (log2 ratio) -3 -2 -1 0 1at 3154.924 kb on - strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.042 kb on + strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.043 kb on - strand, within A4249_RS15580at 3155.148 kb on + strand, within A4249_RS15580at 3155.148 kb on + strand, within A4249_RS15580at 3155.148 kb on + strand, within A4249_RS15580at 3155.148 kb on + strand, within A4249_RS15580at 3155.148 kb on + strand, within A4249_RS15580at 3155.148 kb on + strand, within A4249_RS15580at 3155.148 kb on + strand, within A4249_RS15580at 3155.149 kb on - strand, within A4249_RS15580at 3155.149 kb on - strand, within A4249_RS15580at 3155.149 kb on - strand, within A4249_RS15580at 3155.149 kb on - strand, within A4249_RS15580at 3155.149 kb on - strand, within A4249_RS15580at 3155.149 kb on - strand, within A4249_RS15580at 3155.403 kb on + strand, within A4249_RS15580at 3155.404 kb on - strand, within A4249_RS15580at 3155.404 kb on - strand, within A4249_RS15580at 3155.424 kb on + strandat 3155.521 kb on - strandat 3155.532 kb on + strandat 3155.532 kb on + strandat 3155.537 kb on + strandat 3155.537 kb on + strandat 3155.537 kb on + strandat 3155.537 kb on + strandat 3155.537 kb on + strandat 3155.537 kb on + strandat 3155.537 kb on + strandat 3155.537 kb on + strandat 3155.538 kb on - strandat 3155.538 kb on - strandat 3155.538 kb on - strandat 3155.538 kb on - strandat 3155.538 kb on - strandat 3155.712 kb on + strand, within A4249_RS15585at 3155.713 kb on - strand, within A4249_RS15585at 3155.713 kb on - strand, within A4249_RS15585at 3155.713 kb on - strand, within A4249_RS15585at 3155.713 kb on - strand, within A4249_RS15585at 3155.717 kb on + strand, within A4249_RS15585at 3155.717 kb on + strand, within A4249_RS15585at 3155.717 kb on + strand, within A4249_RS15585at 3155.717 kb on + strand, within A4249_RS15585at 3155.717 kb on + strand, within A4249_RS15585at 3155.717 kb on + strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.718 kb on - strand, within A4249_RS15585at 3155.856 kb on + strand, within A4249_RS15585at 3155.856 kb on + strand, within A4249_RS15585at 3155.856 kb on + strand, within A4249_RS15585at 3155.856 kb on + strand, within A4249_RS15585at 3155.856 kb on + strand, within A4249_RS15585at 3155.856 kb on + strand, within A4249_RS15585at 3155.857 kb on - strand, within A4249_RS15585at 3155.857 kb on - strand, within A4249_RS15585at 3155.857 kb on - strand, within A4249_RS15585at 3155.857 kb on - strand, within A4249_RS15585at 3155.857 kb on - strand, within A4249_RS15585at 3155.857 kb on - strand, within A4249_RS15585at 3155.857 kb on - strand, within A4249_RS15585at 3156.147 kb on - strand, within A4249_RS15590at 3156.232 kb on + strand, within A4249_RS15590at 3156.232 kb on + strand, within A4249_RS15590at 3156.232 kb on + strand, within A4249_RS15590at 3156.232 kb on + strand, within A4249_RS15590at 3156.232 kb on + strand, within A4249_RS15590at 3156.356 kb on + strand, within A4249_RS15590at 3156.356 kb on + strand, within A4249_RS15590at 3156.356 kb on + strand, within A4249_RS15590at 3156.357 kb on - strand, within A4249_RS15590at 3156.357 kb on - strand, within A4249_RS15590at 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.464 kb on + strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.465 kb on - strandat 3156.675 kb on + strand, within A4249_RS15595at 3156.675 kb on + strand, within A4249_RS15595at 3156.675 kb on + strand, within A4249_RS15595at 3156.675 kb on + strand, within A4249_RS15595at 3156.675 kb on + strand, within A4249_RS15595at 3156.676 kb on - strand, within A4249_RS15595at 3156.676 kb on - strand, within A4249_RS15595at 3156.676 kb on - strand, within A4249_RS15595at 3156.676 kb on - strand, within A4249_RS15595at 3156.892 kb on + strand, within A4249_RS15600at 3156.893 kb on - strand, within A4249_RS15600at 3157.032 kb on - strand, within A4249_RS15600at 3157.079 kb on + strand, within A4249_RS15600at 3157.080 kb on - strand, within A4249_RS15600at 3157.080 kb on - strand, within A4249_RS15600at 3157.247 kb on + strand, within A4249_RS15600at 3157.247 kb on + strand, within A4249_RS15600at 3157.247 kb on + strand, within A4249_RS15600at 3157.247 kb on + strand, within A4249_RS15600at 3157.248 kb on - strand, within A4249_RS15600at 3157.248 kb on - strand, within A4249_RS15600at 3157.248 kb on - strand, within A4249_RS15600at 3157.248 kb on - strand, within A4249_RS15600at 3157.248 kb on - strand, within A4249_RS15600at 3157.248 kb on - strand, within A4249_RS15600at 3157.277 kb on + strand, within A4249_RS15600at 3157.277 kb on + strand, within A4249_RS15600at 3157.277 kb on + strand, within A4249_RS15600at 3157.277 kb on + strand, within A4249_RS15600at 3157.278 kb on - strand, within A4249_RS15600at 3157.278 kb on - strand, within A4249_RS15600at 3157.278 kb on - strand, within A4249_RS15600at 3157.278 kb on - strand, within A4249_RS15600

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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3,154,924 - A4249_RS15580 0.42 -0.1
3,155,042 + A4249_RS15580 0.54 -0.0
3,155,042 + A4249_RS15580 0.54 -1.5
3,155,042 + A4249_RS15580 0.54 +0.4
3,155,042 + A4249_RS15580 0.54 -1.5
3,155,042 + A4249_RS15580 0.54 -0.3
3,155,042 + A4249_RS15580 0.54 -1.1
3,155,042 + A4249_RS15580 0.54 +1.3
3,155,042 + A4249_RS15580 0.54 -0.1
3,155,042 + A4249_RS15580 0.54 +0.7
3,155,042 + A4249_RS15580 0.54 -3.0
3,155,042 + A4249_RS15580 0.54 -2.4
3,155,042 + A4249_RS15580 0.54 -0.7
3,155,042 + A4249_RS15580 0.54 -0.6
3,155,043 - A4249_RS15580 0.54 -0.1
3,155,043 - A4249_RS15580 0.54 -0.5
3,155,043 - A4249_RS15580 0.54 +1.3
3,155,043 - A4249_RS15580 0.54 -0.2
3,155,043 - A4249_RS15580 0.54 -0.3
3,155,043 - A4249_RS15580 0.54 +0.3
3,155,043 - A4249_RS15580 0.54 -1.0
3,155,043 - A4249_RS15580 0.54 -1.7
3,155,043 - A4249_RS15580 0.54 +0.1
3,155,043 - A4249_RS15580 0.54 +0.2
3,155,043 - A4249_RS15580 0.54 -0.4
3,155,043 - A4249_RS15580 0.54 -0.1
3,155,043 - A4249_RS15580 0.54 +0.0
3,155,148 + A4249_RS15580 0.64 +0.1
3,155,148 + A4249_RS15580 0.64 -0.6
3,155,148 + A4249_RS15580 0.64 +0.6
3,155,148 + A4249_RS15580 0.64 +0.0
3,155,148 + A4249_RS15580 0.64 +0.9
3,155,148 + A4249_RS15580 0.64 +0.0
3,155,148 + A4249_RS15580 0.64 -0.2
3,155,149 - A4249_RS15580 0.64 -0.3
3,155,149 - A4249_RS15580 0.64 +0.3
3,155,149 - A4249_RS15580 0.64 -0.9
3,155,149 - A4249_RS15580 0.64 -1.0
3,155,149 - A4249_RS15580 0.64 +0.2
3,155,149 - A4249_RS15580 0.64 -0.5
3,155,403 + A4249_RS15580 0.88 -0.2
3,155,404 - A4249_RS15580 0.89 -0.9
3,155,404 - A4249_RS15580 0.89 -1.0
3,155,424 + -0.1
3,155,521 - +0.5
3,155,532 + -0.9
3,155,532 + -0.0
3,155,537 + +0.3
3,155,537 + +1.1
3,155,537 + -0.0
3,155,537 + +0.4
3,155,537 + +0.2
3,155,537 + -0.5
3,155,537 + +1.0
3,155,537 + -0.1
3,155,538 - +1.4
3,155,538 - +0.1
3,155,538 - -1.3
3,155,538 - -0.4
3,155,538 - -0.6
3,155,712 + A4249_RS15585 0.45 -0.2
3,155,713 - A4249_RS15585 0.45 -0.7
3,155,713 - A4249_RS15585 0.45 +1.3
3,155,713 - A4249_RS15585 0.45 -0.8
3,155,713 - A4249_RS15585 0.45 -0.2
3,155,717 + A4249_RS15585 0.46 +0.5
3,155,717 + A4249_RS15585 0.46 +0.4
3,155,717 + A4249_RS15585 0.46 +1.5
3,155,717 + A4249_RS15585 0.46 +0.1
3,155,717 + A4249_RS15585 0.46 -1.7
3,155,717 + A4249_RS15585 0.46 +0.4
3,155,718 - A4249_RS15585 0.46 -0.8
3,155,718 - A4249_RS15585 0.46 -0.1
3,155,718 - A4249_RS15585 0.46 +0.3
3,155,718 - A4249_RS15585 0.46 +0.7
3,155,718 - A4249_RS15585 0.46 -1.2
3,155,718 - A4249_RS15585 0.46 -0.5
3,155,718 - A4249_RS15585 0.46 +0.5
3,155,718 - A4249_RS15585 0.46 -0.1
3,155,718 - A4249_RS15585 0.46 -0.1
3,155,718 - A4249_RS15585 0.46 +0.0
3,155,718 - A4249_RS15585 0.46 -1.8
3,155,718 - A4249_RS15585 0.46 -0.4
3,155,718 - A4249_RS15585 0.46 -0.3
3,155,718 - A4249_RS15585 0.46 -0.2
3,155,718 - A4249_RS15585 0.46 -0.8
3,155,718 - A4249_RS15585 0.46 -0.5
3,155,718 - A4249_RS15585 0.46 +0.1
3,155,718 - A4249_RS15585 0.46 -0.2
3,155,856 + A4249_RS15585 0.82 -0.9
3,155,856 + A4249_RS15585 0.82 -1.0
3,155,856 + A4249_RS15585 0.82 +0.4
3,155,856 + A4249_RS15585 0.82 +1.0
3,155,856 + A4249_RS15585 0.82 -1.3
3,155,856 + A4249_RS15585 0.82 -0.2
3,155,857 - A4249_RS15585 0.82 -0.1
3,155,857 - A4249_RS15585 0.82 -0.6
3,155,857 - A4249_RS15585 0.82 +0.7
3,155,857 - A4249_RS15585 0.82 -0.4
3,155,857 - A4249_RS15585 0.82 -0.4
3,155,857 - A4249_RS15585 0.82 -0.1
3,155,857 - A4249_RS15585 0.82 +0.3
3,156,147 - A4249_RS15590 0.41 -0.5
3,156,232 + A4249_RS15590 0.57 -0.0
3,156,232 + A4249_RS15590 0.57 -0.3
3,156,232 + A4249_RS15590 0.57 -0.6
3,156,232 + A4249_RS15590 0.57 +0.2
3,156,232 + A4249_RS15590 0.57 -1.4
3,156,356 + A4249_RS15590 0.80 -0.4
3,156,356 + A4249_RS15590 0.80 +0.9
3,156,356 + A4249_RS15590 0.80 -0.6
3,156,357 - A4249_RS15590 0.80 -0.3
3,156,357 - A4249_RS15590 0.80 +0.8
3,156,464 + -0.0
3,156,464 + -0.1
3,156,464 + -0.6
3,156,464 + +0.2
3,156,464 + -0.3
3,156,464 + -0.8
3,156,464 + -0.1
3,156,464 + -0.7
3,156,464 + -0.6
3,156,464 + +0.3
3,156,464 + -0.6
3,156,464 + -1.5
3,156,464 + +0.2
3,156,465 - +0.6
3,156,465 - -0.8
3,156,465 - +0.8
3,156,465 - -0.1
3,156,465 - +0.8
3,156,465 - +0.1
3,156,465 - -0.1
3,156,465 - -0.2
3,156,465 - -0.9
3,156,465 - -0.2
3,156,465 - +0.3
3,156,675 + A4249_RS15595 0.60 +0.1
3,156,675 + A4249_RS15595 0.60 -0.2
3,156,675 + A4249_RS15595 0.60 +0.3
3,156,675 + A4249_RS15595 0.60 +0.1
3,156,675 + A4249_RS15595 0.60 -1.2
3,156,676 - A4249_RS15595 0.60 -0.5
3,156,676 - A4249_RS15595 0.60 +0.4
3,156,676 - A4249_RS15595 0.60 -1.6
3,156,676 - A4249_RS15595 0.60 -2.6
3,156,892 + A4249_RS15600 0.13 -1.5
3,156,893 - A4249_RS15600 0.13 +0.9
3,157,032 - A4249_RS15600 0.36 +0.2
3,157,079 + A4249_RS15600 0.44 +0.5
3,157,080 - A4249_RS15600 0.44 -1.0
3,157,080 - A4249_RS15600 0.44 -0.5
3,157,247 + A4249_RS15600 0.73 +0.3
3,157,247 + A4249_RS15600 0.73 -0.5
3,157,247 + A4249_RS15600 0.73 +0.6
3,157,247 + A4249_RS15600 0.73 -0.2
3,157,248 - A4249_RS15600 0.73 -0.4
3,157,248 - A4249_RS15600 0.73 +0.3
3,157,248 - A4249_RS15600 0.73 +0.5
3,157,248 - A4249_RS15600 0.73 +0.4
3,157,248 - A4249_RS15600 0.73 +0.1
3,157,248 - A4249_RS15600 0.73 +0.3
3,157,277 + A4249_RS15600 0.78 -0.2
3,157,277 + A4249_RS15600 0.78 -0.8
3,157,277 + A4249_RS15600 0.78 +0.5
3,157,277 + A4249_RS15600 0.78 -0.1
3,157,278 - A4249_RS15600 0.78 -0.2
3,157,278 - A4249_RS15600 0.78 -0.0
3,157,278 - A4249_RS15600 0.78 +0.0
3,157,278 - A4249_RS15600 0.78 +0.1

Or see this region's nucleotide sequence