Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS15340 and A4249_RS15345 are separated by 26 nucleotides A4249_RS15345 and A4249_RS15350 are separated by 87 nucleotides A4249_RS15350 and A4249_RS15355 are separated by 18 nucleotides A4249_RS15355 and A4249_RS15360 are separated by 144 nucleotides
A4249_RS15340: A4249_RS15340 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 3,107,154 to 3,108,986
_RS15340
A4249_RS15345: A4249_RS15345 - DUF6491 family protein, at 3,109,013 to 3,109,399
_RS15345
A4249_RS15350: A4249_RS15350 - hypothetical protein, at 3,109,487 to 3,109,927
_RS15350
A4249_RS15355: A4249_RS15355 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 3,109,946 to 3,112,372
_RS15355
A4249_RS15360: A4249_RS15360 - DNA replication/repair protein RecF, at 3,112,517 to 3,113,638
_RS15360
Position (kb)
3109
3110
3111
3112
3113 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3109.012 kb on + strand at 3109.012 kb on + strand at 3109.012 kb on + strand at 3109.012 kb on + strand at 3109.012 kb on + strand at 3109.012 kb on + strand at 3109.012 kb on + strand at 3109.012 kb on + strand at 3109.013 kb on - strand at 3109.013 kb on - strand at 3109.013 kb on - strand at 3109.013 kb on - strand at 3109.013 kb on - strand at 3109.051 kb on - strand at 3109.166 kb on + strand, within A4249_RS15345 at 3109.166 kb on + strand, within A4249_RS15345 at 3109.166 kb on + strand, within A4249_RS15345 at 3109.166 kb on + strand, within A4249_RS15345 at 3109.166 kb on + strand, within A4249_RS15345 at 3109.166 kb on + strand, within A4249_RS15345 at 3109.167 kb on - strand, within A4249_RS15345 at 3109.167 kb on - strand, within A4249_RS15345 at 3109.497 kb on + strand at 3109.497 kb on + strand at 3109.497 kb on + strand at 3109.498 kb on - strand at 3109.498 kb on - strand at 3109.592 kb on + strand, within A4249_RS15350 at 3109.592 kb on + strand, within A4249_RS15350 at 3109.592 kb on + strand, within A4249_RS15350 at 3109.592 kb on + strand, within A4249_RS15350 at 3109.593 kb on - strand, within A4249_RS15350 at 3109.603 kb on + strand, within A4249_RS15350 at 3109.603 kb on + strand, within A4249_RS15350 at 3109.604 kb on - strand, within A4249_RS15350 at 3109.604 kb on - strand, within A4249_RS15350 at 3109.604 kb on - strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.605 kb on + strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.606 kb on - strand, within A4249_RS15350 at 3109.754 kb on + strand, within A4249_RS15350 at 3109.754 kb on + strand, within A4249_RS15350 at 3109.754 kb on + strand, within A4249_RS15350 at 3109.754 kb on + strand, within A4249_RS15350 at 3109.754 kb on + strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.755 kb on - strand, within A4249_RS15350 at 3109.784 kb on + strand, within A4249_RS15350 at 3109.784 kb on + strand, within A4249_RS15350 at 3109.784 kb on + strand, within A4249_RS15350 at 3109.784 kb on + strand, within A4249_RS15350 at 3109.785 kb on - strand, within A4249_RS15350 at 3109.785 kb on - strand, within A4249_RS15350 at 3109.829 kb on + strand, within A4249_RS15350 at 3109.829 kb on + strand, within A4249_RS15350 at 3109.829 kb on + strand, within A4249_RS15350 at 3109.829 kb on + strand, within A4249_RS15350 at 3109.829 kb on + strand, within A4249_RS15350 at 3109.829 kb on + strand, within A4249_RS15350 at 3109.829 kb on + strand, within A4249_RS15350 at 3109.829 kb on + strand, within A4249_RS15350 at 3109.829 kb on + strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.830 kb on - strand, within A4249_RS15350 at 3109.925 kb on + strand at 3109.925 kb on + strand at 3109.926 kb on - strand at 3112.472 kb on + strand at 3112.472 kb on + strand at 3112.472 kb on + strand at 3112.473 kb on - strand at 3112.473 kb on - strand at 3112.473 kb on - strand at 3112.473 kb on - strand at 3112.474 kb on + strand at 3112.474 kb on + strand at 3112.474 kb on + strand at 3112.474 kb on + strand at 3112.475 kb on - strand at 3112.518 kb on + strand at 3112.519 kb on - strand at 3112.519 kb on - strand at 3112.550 kb on + strand at 3112.550 kb on + strand at 3112.551 kb on - strand at 3113.301 kb on + strand, within A4249_RS15360 at 3113.301 kb on + strand, within A4249_RS15360 at 3113.302 kb on - strand, within A4249_RS15360
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 3,109,012 + +0.6 3,109,012 + -0.4 3,109,012 + -2.3 3,109,012 + +1.9 3,109,012 + +0.4 3,109,012 + -1.3 3,109,012 + -0.1 3,109,012 + +0.1 3,109,013 - -2.4 3,109,013 - -1.2 3,109,013 - +0.3 3,109,013 - +1.9 3,109,013 - -1.5 3,109,051 - -0.5 3,109,166 + A4249_RS15345 0.40 -0.1 3,109,166 + A4249_RS15345 0.40 -0.1 3,109,166 + A4249_RS15345 0.40 +0.1 3,109,166 + A4249_RS15345 0.40 +0.1 3,109,166 + A4249_RS15345 0.40 -0.6 3,109,166 + A4249_RS15345 0.40 -0.1 3,109,167 - A4249_RS15345 0.40 -0.3 3,109,167 - A4249_RS15345 0.40 -0.3 3,109,497 + -1.6 3,109,497 + -0.8 3,109,497 + -0.3 3,109,498 - -0.1 3,109,498 - -0.0 3,109,592 + A4249_RS15350 0.24 -1.4 3,109,592 + A4249_RS15350 0.24 +0.4 3,109,592 + A4249_RS15350 0.24 -0.2 3,109,592 + A4249_RS15350 0.24 +0.2 3,109,593 - A4249_RS15350 0.24 -0.5 3,109,603 + A4249_RS15350 0.26 -2.2 3,109,603 + A4249_RS15350 0.26 -0.7 3,109,604 - A4249_RS15350 0.27 -0.2 3,109,604 - A4249_RS15350 0.27 -1.1 3,109,604 - A4249_RS15350 0.27 -1.1 3,109,605 + A4249_RS15350 0.27 -0.6 3,109,605 + A4249_RS15350 0.27 -0.9 3,109,605 + A4249_RS15350 0.27 +0.6 3,109,605 + A4249_RS15350 0.27 -1.1 3,109,605 + A4249_RS15350 0.27 -0.9 3,109,605 + A4249_RS15350 0.27 +0.1 3,109,605 + A4249_RS15350 0.27 -1.3 3,109,605 + A4249_RS15350 0.27 -1.5 3,109,605 + A4249_RS15350 0.27 -0.5 3,109,605 + A4249_RS15350 0.27 +0.9 3,109,605 + A4249_RS15350 0.27 +0.3 3,109,605 + A4249_RS15350 0.27 +0.3 3,109,605 + A4249_RS15350 0.27 -0.4 3,109,605 + A4249_RS15350 0.27 -0.7 3,109,605 + A4249_RS15350 0.27 -0.1 3,109,605 + A4249_RS15350 0.27 -0.2 3,109,605 + A4249_RS15350 0.27 +0.8 3,109,605 + A4249_RS15350 0.27 -0.7 3,109,606 - A4249_RS15350 0.27 -0.1 3,109,606 - A4249_RS15350 0.27 +0.3 3,109,606 - A4249_RS15350 0.27 -0.0 3,109,606 - A4249_RS15350 0.27 -0.6 3,109,606 - A4249_RS15350 0.27 +0.2 3,109,606 - A4249_RS15350 0.27 -0.3 3,109,606 - A4249_RS15350 0.27 +0.1 3,109,606 - A4249_RS15350 0.27 -0.4 3,109,606 - A4249_RS15350 0.27 -1.5 3,109,606 - A4249_RS15350 0.27 -0.3 3,109,606 - A4249_RS15350 0.27 -0.3 3,109,606 - A4249_RS15350 0.27 +0.0 3,109,606 - A4249_RS15350 0.27 -0.3 3,109,606 - A4249_RS15350 0.27 +0.0 3,109,606 - A4249_RS15350 0.27 -0.4 3,109,606 - A4249_RS15350 0.27 -0.0 3,109,606 - A4249_RS15350 0.27 -0.5 3,109,754 + A4249_RS15350 0.61 +0.0 3,109,754 + A4249_RS15350 0.61 -0.3 3,109,754 + A4249_RS15350 0.61 -0.0 3,109,754 + A4249_RS15350 0.61 -0.1 3,109,754 + A4249_RS15350 0.61 -0.5 3,109,755 - A4249_RS15350 0.61 -0.5 3,109,755 - A4249_RS15350 0.61 -1.8 3,109,755 - A4249_RS15350 0.61 -0.2 3,109,755 - A4249_RS15350 0.61 +1.9 3,109,755 - A4249_RS15350 0.61 -0.5 3,109,755 - A4249_RS15350 0.61 +0.2 3,109,755 - A4249_RS15350 0.61 +0.7 3,109,755 - A4249_RS15350 0.61 +0.5 3,109,755 - A4249_RS15350 0.61 -2.1 3,109,755 - A4249_RS15350 0.61 +0.6 3,109,755 - A4249_RS15350 0.61 -0.9 3,109,784 + A4249_RS15350 0.67 +0.7 3,109,784 + A4249_RS15350 0.67 +0.5 3,109,784 + A4249_RS15350 0.67 -0.6 3,109,784 + A4249_RS15350 0.67 -0.5 3,109,785 - A4249_RS15350 0.68 +0.7 3,109,785 - A4249_RS15350 0.68 +0.5 3,109,829 + A4249_RS15350 0.78 +0.9 3,109,829 + A4249_RS15350 0.78 +0.4 3,109,829 + A4249_RS15350 0.78 -0.1 3,109,829 + A4249_RS15350 0.78 +0.1 3,109,829 + A4249_RS15350 0.78 -0.7 3,109,829 + A4249_RS15350 0.78 -1.5 3,109,829 + A4249_RS15350 0.78 -1.4 3,109,829 + A4249_RS15350 0.78 -0.8 3,109,829 + A4249_RS15350 0.78 +0.1 3,109,830 - A4249_RS15350 0.78 -0.1 3,109,830 - A4249_RS15350 0.78 +0.2 3,109,830 - A4249_RS15350 0.78 -0.0 3,109,830 - A4249_RS15350 0.78 +0.2 3,109,830 - A4249_RS15350 0.78 +0.2 3,109,830 - A4249_RS15350 0.78 -0.2 3,109,830 - A4249_RS15350 0.78 -0.8 3,109,830 - A4249_RS15350 0.78 +1.1 3,109,830 - A4249_RS15350 0.78 +0.2 3,109,830 - A4249_RS15350 0.78 -0.8 3,109,830 - A4249_RS15350 0.78 -0.8 3,109,830 - A4249_RS15350 0.78 +0.6 3,109,925 + -1.5 3,109,925 + +0.7 3,109,926 - +0.2 3,112,472 + -0.5 3,112,472 + +0.3 3,112,472 + -0.3 3,112,473 - -0.4 3,112,473 - -0.6 3,112,473 - -0.1 3,112,473 - +0.3 3,112,474 + -0.0 3,112,474 + +0.4 3,112,474 + -0.6 3,112,474 + +0.2 3,112,475 - -0.2 3,112,518 + -0.4 3,112,519 - -0.5 3,112,519 - -0.6 3,112,550 + +1.1 3,112,550 + +0.3 3,112,551 - -1.2 3,113,301 + A4249_RS15360 0.70 +0.0 3,113,301 + A4249_RS15360 0.70 -1.1 3,113,302 - A4249_RS15360 0.70 -0.2
Or see this region's nucleotide sequence