Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15290

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS15280 and A4249_RS16830 are separated by 200 nucleotidesA4249_RS16830 and A4249_RS15285 are separated by 18 nucleotidesA4249_RS15285 and A4249_RS15290 are separated by 228 nucleotidesA4249_RS15290 and A4249_RS15295 overlap by 13 nucleotides A4249_RS15280: A4249_RS15280 - hypothetical protein, at 3,092,251 to 3,093,855 _RS15280 A4249_RS16830: A4249_RS16830 - hypothetical protein, at 3,094,056 to 3,094,202 _RS16830 A4249_RS15285: A4249_RS15285 - hypothetical protein, at 3,094,221 to 3,094,595 _RS15285 A4249_RS15290: A4249_RS15290 - malate synthase G, at 3,094,824 to 3,096,968 _RS15290 A4249_RS15295: A4249_RS15295 - mechanosensitive ion channel, at 3,096,956 to 3,098,005 _RS15295 Position (kb) 3094 3095 3096 3097Strain fitness (log2 ratio) -2 -1 0 1 2at 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.856 kb on - strandat 3093.856 kb on - strandat 3093.930 kb on + strandat 3093.930 kb on + strandat 3093.930 kb on + strandat 3093.930 kb on + strandat 3093.931 kb on - strandat 3093.931 kb on - strandat 3093.931 kb on - strandat 3093.935 kb on + strandat 3093.935 kb on + strandat 3093.935 kb on + strandat 3093.936 kb on - strandat 3094.037 kb on + strandat 3094.083 kb on - strand, within A4249_RS16830at 3094.151 kb on + strand, within A4249_RS16830at 3094.152 kb on - strand, within A4249_RS16830at 3094.152 kb on - strand, within A4249_RS16830at 3094.156 kb on + strand, within A4249_RS16830at 3094.157 kb on - strand, within A4249_RS16830at 3094.498 kb on + strand, within A4249_RS15285at 3094.498 kb on + strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.633 kb on + strandat 3094.645 kb on + strandat 3094.645 kb on + strandat 3094.645 kb on + strandat 3094.645 kb on + strandat 3094.646 kb on - strandat 3094.646 kb on - strandat 3094.715 kb on + strandat 3094.715 kb on + strandat 3094.715 kb on + strandat 3094.715 kb on + strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.894 kb on + strandat 3094.894 kb on + strandat 3094.894 kb on + strandat 3094.894 kb on + strandat 3094.894 kb on + strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3095.049 kb on + strand, within A4249_RS15290at 3095.049 kb on + strand, within A4249_RS15290at 3095.049 kb on + strand, within A4249_RS15290at 3095.049 kb on + strand, within A4249_RS15290at 3095.049 kb on + strand, within A4249_RS15290at 3095.050 kb on - strand, within A4249_RS15290at 3095.050 kb on - strand, within A4249_RS15290at 3095.050 kb on - strand, within A4249_RS15290at 3095.050 kb on - strand, within A4249_RS15290at 3095.091 kb on + strand, within A4249_RS15290at 3095.238 kb on + strand, within A4249_RS15290at 3095.238 kb on + strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.251 kb on - strand, within A4249_RS15290at 3095.251 kb on - strand, within A4249_RS15290at 3095.293 kb on - strand, within A4249_RS15290at 3095.293 kb on - strand, within A4249_RS15290at 3095.293 kb on - strand, within A4249_RS15290at 3095.375 kb on + strand, within A4249_RS15290at 3095.398 kb on + strand, within A4249_RS15290at 3095.398 kb on + strand, within A4249_RS15290at 3095.399 kb on - strand, within A4249_RS15290at 3095.399 kb on - strand, within A4249_RS15290at 3095.656 kb on - strand, within A4249_RS15290at 3095.913 kb on + strand, within A4249_RS15290at 3095.913 kb on + strand, within A4249_RS15290at 3095.913 kb on + strand, within A4249_RS15290at 3095.913 kb on + strand, within A4249_RS15290at 3095.913 kb on + strand, within A4249_RS15290at 3095.913 kb on + strand, within A4249_RS15290at 3095.913 kb on + strand, within A4249_RS15290at 3095.913 kb on + strand, within A4249_RS15290at 3095.913 kb on + strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.914 kb on - strand, within A4249_RS15290at 3095.918 kb on + strand, within A4249_RS15290at 3095.918 kb on + strand, within A4249_RS15290at 3095.918 kb on + strand, within A4249_RS15290at 3095.919 kb on - strand, within A4249_RS15290at 3095.919 kb on - strand, within A4249_RS15290at 3095.919 kb on - strand, within A4249_RS15290at 3095.919 kb on - strand, within A4249_RS15290at 3095.919 kb on - strand, within A4249_RS15290at 3095.964 kb on + strand, within A4249_RS15290at 3095.964 kb on + strand, within A4249_RS15290at 3095.964 kb on + strand, within A4249_RS15290at 3095.965 kb on - strand, within A4249_RS15290at 3095.965 kb on - strand, within A4249_RS15290at 3096.258 kb on + strand, within A4249_RS15290at 3096.258 kb on + strand, within A4249_RS15290at 3096.259 kb on - strand, within A4249_RS15290at 3096.259 kb on - strand, within A4249_RS15290at 3096.259 kb on - strand, within A4249_RS15290at 3096.259 kb on - strand, within A4249_RS15290at 3096.447 kb on + strand, within A4249_RS15290at 3096.447 kb on + strand, within A4249_RS15290at 3096.447 kb on + strand, within A4249_RS15290at 3096.448 kb on - strand, within A4249_RS15290at 3096.448 kb on - strand, within A4249_RS15290at 3096.448 kb on - strand, within A4249_RS15290at 3096.448 kb on - strand, within A4249_RS15290at 3096.518 kb on - strand, within A4249_RS15290at 3096.518 kb on - strand, within A4249_RS15290at 3096.518 kb on - strand, within A4249_RS15290at 3096.598 kb on + strand, within A4249_RS15290at 3096.598 kb on + strand, within A4249_RS15290at 3096.598 kb on + strand, within A4249_RS15290at 3096.599 kb on - strand, within A4249_RS15290at 3096.599 kb on - strand, within A4249_RS15290at 3096.599 kb on - strand, within A4249_RS15290at 3096.606 kb on + strand, within A4249_RS15290at 3096.606 kb on + strand, within A4249_RS15290at 3096.606 kb on + strand, within A4249_RS15290at 3096.606 kb on + strand, within A4249_RS15290at 3096.607 kb on - strand, within A4249_RS15290at 3096.607 kb on - strand, within A4249_RS15290at 3096.607 kb on - strand, within A4249_RS15290at 3096.607 kb on - strand, within A4249_RS15290at 3096.607 kb on - strand, within A4249_RS15290at 3096.607 kb on - strand, within A4249_RS15290at 3096.713 kb on + strand, within A4249_RS15290at 3096.713 kb on + strand, within A4249_RS15290at 3096.743 kb on + strand, within A4249_RS15290at 3096.743 kb on + strand, within A4249_RS15290at 3096.743 kb on + strand, within A4249_RS15290at 3096.819 kb on + strandat 3096.819 kb on + strandat 3096.819 kb on + strandat 3096.858 kb on + strandat 3096.858 kb on + strandat 3096.858 kb on + strandat 3096.909 kb on + strandat 3096.910 kb on - strandat 3096.910 kb on - strandat 3097.149 kb on - strand, within A4249_RS15295at 3097.221 kb on + strand, within A4249_RS15295at 3097.222 kb on - strand, within A4249_RS15295at 3097.289 kb on + strand, within A4249_RS15295at 3097.290 kb on - strand, within A4249_RS15295at 3097.290 kb on - strand, within A4249_RS15295at 3097.416 kb on + strand, within A4249_RS15295at 3097.417 kb on - strand, within A4249_RS15295at 3097.417 kb on - strand, within A4249_RS15295at 3097.600 kb on + strand, within A4249_RS15295at 3097.601 kb on - strand, within A4249_RS15295at 3097.601 kb on - strand, within A4249_RS15295at 3097.601 kb on - strand, within A4249_RS15295at 3097.601 kb on - strand, within A4249_RS15295at 3097.601 kb on - strand, within A4249_RS15295at 3097.602 kb on + strand, within A4249_RS15295at 3097.602 kb on + strand, within A4249_RS15295at 3097.602 kb on + strand, within A4249_RS15295at 3097.603 kb on - strand, within A4249_RS15295at 3097.603 kb on - strand, within A4249_RS15295at 3097.603 kb on - strand, within A4249_RS15295at 3097.806 kb on + strand, within A4249_RS15295at 3097.806 kb on + strand, within A4249_RS15295at 3097.806 kb on + strand, within A4249_RS15295at 3097.806 kb on + strand, within A4249_RS15295at 3097.807 kb on - strand, within A4249_RS15295at 3097.807 kb on - strand, within A4249_RS15295at 3097.807 kb on - strand, within A4249_RS15295at 3097.807 kb on - strand, within A4249_RS15295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
3,093,855 + -0.3
3,093,855 + -1.4
3,093,855 + +0.4
3,093,855 + -0.7
3,093,855 + +0.8
3,093,855 + +0.0
3,093,855 + +0.5
3,093,855 + +0.4
3,093,855 + -0.0
3,093,855 + +0.1
3,093,856 - +0.0
3,093,856 - +0.6
3,093,930 + -0.4
3,093,930 + -0.6
3,093,930 + -1.6
3,093,930 + +0.6
3,093,931 - -0.9
3,093,931 - +0.5
3,093,931 - +0.4
3,093,935 + +1.2
3,093,935 + +0.4
3,093,935 + -0.0
3,093,936 - +0.2
3,094,037 + -0.3
3,094,083 - A4249_RS16830 0.18 -0.3
3,094,151 + A4249_RS16830 0.65 -0.3
3,094,152 - A4249_RS16830 0.65 +0.7
3,094,152 - A4249_RS16830 0.65 +0.2
3,094,156 + A4249_RS16830 0.68 +0.0
3,094,157 - A4249_RS16830 0.69 +0.1
3,094,498 + A4249_RS15285 0.74 +0.2
3,094,498 + A4249_RS15285 0.74 -0.0
3,094,499 - A4249_RS15285 0.74 +0.4
3,094,499 - A4249_RS15285 0.74 -0.8
3,094,499 - A4249_RS15285 0.74 +0.2
3,094,499 - A4249_RS15285 0.74 -0.1
3,094,499 - A4249_RS15285 0.74 -1.2
3,094,499 - A4249_RS15285 0.74 -0.6
3,094,499 - A4249_RS15285 0.74 -1.0
3,094,633 + -0.6
3,094,645 + +0.4
3,094,645 + -0.5
3,094,645 + -0.5
3,094,645 + -0.4
3,094,646 - -0.3
3,094,646 - -0.1
3,094,715 + -1.4
3,094,715 + +0.9
3,094,715 + -0.9
3,094,715 + -0.8
3,094,716 - -0.9
3,094,716 - -0.9
3,094,716 - +0.1
3,094,716 - +1.3
3,094,716 - -0.1
3,094,716 - +0.1
3,094,716 - -0.1
3,094,894 + +0.3
3,094,894 + +1.0
3,094,894 + +0.2
3,094,894 + +0.6
3,094,894 + -0.3
3,094,895 - +0.5
3,094,895 - -2.5
3,094,895 - +0.3
3,094,895 - +0.2
3,094,895 - -0.1
3,094,895 - +0.5
3,094,895 - -0.7
3,094,895 - -0.3
3,094,895 - -0.2
3,094,895 - +0.6
3,094,895 - -0.4
3,094,895 - -1.1
3,094,895 - +0.6
3,095,049 + A4249_RS15290 0.10 -0.5
3,095,049 + A4249_RS15290 0.10 -0.0
3,095,049 + A4249_RS15290 0.10 +0.6
3,095,049 + A4249_RS15290 0.10 +1.0
3,095,049 + A4249_RS15290 0.10 -0.2
3,095,050 - A4249_RS15290 0.11 -0.4
3,095,050 - A4249_RS15290 0.11 -0.3
3,095,050 - A4249_RS15290 0.11 +0.7
3,095,050 - A4249_RS15290 0.11 +0.5
3,095,091 + A4249_RS15290 0.12 -2.0
3,095,238 + A4249_RS15290 0.19 -0.5
3,095,238 + A4249_RS15290 0.19 -0.5
3,095,239 - A4249_RS15290 0.19 -0.9
3,095,239 - A4249_RS15290 0.19 -0.7
3,095,239 - A4249_RS15290 0.19 +0.1
3,095,239 - A4249_RS15290 0.19 -0.2
3,095,239 - A4249_RS15290 0.19 +0.1
3,095,239 - A4249_RS15290 0.19 +0.2
3,095,239 - A4249_RS15290 0.19 -1.1
3,095,239 - A4249_RS15290 0.19 -0.0
3,095,251 - A4249_RS15290 0.20 +0.5
3,095,251 - A4249_RS15290 0.20 +0.0
3,095,293 - A4249_RS15290 0.22 -0.6
3,095,293 - A4249_RS15290 0.22 +1.3
3,095,293 - A4249_RS15290 0.22 -1.0
3,095,375 + A4249_RS15290 0.26 -0.0
3,095,398 + A4249_RS15290 0.27 +0.3
3,095,398 + A4249_RS15290 0.27 +0.0
3,095,399 - A4249_RS15290 0.27 +0.3
3,095,399 - A4249_RS15290 0.27 +0.7
3,095,656 - A4249_RS15290 0.39 -0.0
3,095,913 + A4249_RS15290 0.51 +0.5
3,095,913 + A4249_RS15290 0.51 +0.4
3,095,913 + A4249_RS15290 0.51 -0.6
3,095,913 + A4249_RS15290 0.51 -0.9
3,095,913 + A4249_RS15290 0.51 +0.3
3,095,913 + A4249_RS15290 0.51 +0.0
3,095,913 + A4249_RS15290 0.51 +0.0
3,095,913 + A4249_RS15290 0.51 +0.5
3,095,913 + A4249_RS15290 0.51 +0.4
3,095,914 - A4249_RS15290 0.51 -0.6
3,095,914 - A4249_RS15290 0.51 -2.0
3,095,914 - A4249_RS15290 0.51 +0.0
3,095,914 - A4249_RS15290 0.51 -0.2
3,095,914 - A4249_RS15290 0.51 -0.2
3,095,914 - A4249_RS15290 0.51 +0.5
3,095,914 - A4249_RS15290 0.51 +0.1
3,095,914 - A4249_RS15290 0.51 -0.3
3,095,914 - A4249_RS15290 0.51 -0.4
3,095,914 - A4249_RS15290 0.51 +1.1
3,095,918 + A4249_RS15290 0.51 +0.3
3,095,918 + A4249_RS15290 0.51 -0.5
3,095,918 + A4249_RS15290 0.51 +0.3
3,095,919 - A4249_RS15290 0.51 -0.7
3,095,919 - A4249_RS15290 0.51 +1.0
3,095,919 - A4249_RS15290 0.51 +0.9
3,095,919 - A4249_RS15290 0.51 +0.4
3,095,919 - A4249_RS15290 0.51 +0.2
3,095,964 + A4249_RS15290 0.53 -0.5
3,095,964 + A4249_RS15290 0.53 -0.6
3,095,964 + A4249_RS15290 0.53 +0.7
3,095,965 - A4249_RS15290 0.53 -0.4
3,095,965 - A4249_RS15290 0.53 +0.3
3,096,258 + A4249_RS15290 0.67 +1.5
3,096,258 + A4249_RS15290 0.67 -0.1
3,096,259 - A4249_RS15290 0.67 -0.4
3,096,259 - A4249_RS15290 0.67 +1.3
3,096,259 - A4249_RS15290 0.67 +2.1
3,096,259 - A4249_RS15290 0.67 +0.1
3,096,447 + A4249_RS15290 0.76 +0.6
3,096,447 + A4249_RS15290 0.76 +0.7
3,096,447 + A4249_RS15290 0.76 -0.6
3,096,448 - A4249_RS15290 0.76 -0.2
3,096,448 - A4249_RS15290 0.76 -0.4
3,096,448 - A4249_RS15290 0.76 -1.0
3,096,448 - A4249_RS15290 0.76 +0.2
3,096,518 - A4249_RS15290 0.79 +0.5
3,096,518 - A4249_RS15290 0.79 +0.8
3,096,518 - A4249_RS15290 0.79 -1.1
3,096,598 + A4249_RS15290 0.83 -0.6
3,096,598 + A4249_RS15290 0.83 +2.4
3,096,598 + A4249_RS15290 0.83 -1.0
3,096,599 - A4249_RS15290 0.83 -0.8
3,096,599 - A4249_RS15290 0.83 +0.4
3,096,599 - A4249_RS15290 0.83 -0.0
3,096,606 + A4249_RS15290 0.83 -0.1
3,096,606 + A4249_RS15290 0.83 -0.5
3,096,606 + A4249_RS15290 0.83 +0.8
3,096,606 + A4249_RS15290 0.83 -0.5
3,096,607 - A4249_RS15290 0.83 -0.2
3,096,607 - A4249_RS15290 0.83 -0.5
3,096,607 - A4249_RS15290 0.83 +0.2
3,096,607 - A4249_RS15290 0.83 +0.2
3,096,607 - A4249_RS15290 0.83 -0.4
3,096,607 - A4249_RS15290 0.83 -0.5
3,096,713 + A4249_RS15290 0.88 -0.5
3,096,713 + A4249_RS15290 0.88 -0.9
3,096,743 + A4249_RS15290 0.89 -0.9
3,096,743 + A4249_RS15290 0.89 -0.1
3,096,743 + A4249_RS15290 0.89 -0.2
3,096,819 + +0.8
3,096,819 + -0.2
3,096,819 + -0.2
3,096,858 + -0.1
3,096,858 + -1.4
3,096,858 + -0.7
3,096,909 + -1.2
3,096,910 - +0.6
3,096,910 - -0.0
3,097,149 - A4249_RS15295 0.18 -0.2
3,097,221 + A4249_RS15295 0.25 -0.5
3,097,222 - A4249_RS15295 0.25 -0.4
3,097,289 + A4249_RS15295 0.32 +0.7
3,097,290 - A4249_RS15295 0.32 +0.2
3,097,290 - A4249_RS15295 0.32 +0.9
3,097,416 + A4249_RS15295 0.44 +0.2
3,097,417 - A4249_RS15295 0.44 +0.1
3,097,417 - A4249_RS15295 0.44 -0.7
3,097,600 + A4249_RS15295 0.61 +0.2
3,097,601 - A4249_RS15295 0.61 +0.4
3,097,601 - A4249_RS15295 0.61 +1.1
3,097,601 - A4249_RS15295 0.61 +0.6
3,097,601 - A4249_RS15295 0.61 +0.2
3,097,601 - A4249_RS15295 0.61 -2.0
3,097,602 + A4249_RS15295 0.62 -0.1
3,097,602 + A4249_RS15295 0.62 +1.7
3,097,602 + A4249_RS15295 0.62 +0.6
3,097,603 - A4249_RS15295 0.62 -0.7
3,097,603 - A4249_RS15295 0.62 +0.5
3,097,603 - A4249_RS15295 0.62 +0.0
3,097,806 + A4249_RS15295 0.81 -0.4
3,097,806 + A4249_RS15295 0.81 -0.3
3,097,806 + A4249_RS15295 0.81 +0.5
3,097,806 + A4249_RS15295 0.81 +0.1
3,097,807 - A4249_RS15295 0.81 +0.2
3,097,807 - A4249_RS15295 0.81 +1.0
3,097,807 - A4249_RS15295 0.81 -0.3
3,097,807 - A4249_RS15295 0.81 +0.5

Or see this region's nucleotide sequence