Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15285

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15280 and A4249_RS16830 are separated by 200 nucleotidesA4249_RS16830 and A4249_RS15285 are separated by 18 nucleotidesA4249_RS15285 and A4249_RS15290 are separated by 228 nucleotides A4249_RS15280: A4249_RS15280 - hypothetical protein, at 3,092,251 to 3,093,855 _RS15280 A4249_RS16830: A4249_RS16830 - hypothetical protein, at 3,094,056 to 3,094,202 _RS16830 A4249_RS15285: A4249_RS15285 - hypothetical protein, at 3,094,221 to 3,094,595 _RS15285 A4249_RS15290: A4249_RS15290 - malate synthase G, at 3,094,824 to 3,096,968 _RS15290 Position (kb) 3094 3095Strain fitness (log2 ratio) -2 -1 0 1 2at 3093.221 kb on + strand, within A4249_RS15280at 3093.221 kb on + strand, within A4249_RS15280at 3093.221 kb on + strand, within A4249_RS15280at 3093.222 kb on - strand, within A4249_RS15280at 3093.222 kb on - strand, within A4249_RS15280at 3093.222 kb on - strand, within A4249_RS15280at 3093.222 kb on - strand, within A4249_RS15280at 3093.303 kb on + strand, within A4249_RS15280at 3093.311 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.380 kb on + strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.381 kb on - strand, within A4249_RS15280at 3093.383 kb on + strand, within A4249_RS15280at 3093.383 kb on + strand, within A4249_RS15280at 3093.383 kb on + strand, within A4249_RS15280at 3093.384 kb on - strand, within A4249_RS15280at 3093.384 kb on - strand, within A4249_RS15280at 3093.384 kb on - strand, within A4249_RS15280at 3093.417 kb on - strand, within A4249_RS15280at 3093.455 kb on + strand, within A4249_RS15280at 3093.455 kb on + strand, within A4249_RS15280at 3093.456 kb on - strand, within A4249_RS15280at 3093.456 kb on - strand, within A4249_RS15280at 3093.525 kb on + strand, within A4249_RS15280at 3093.525 kb on + strand, within A4249_RS15280at 3093.526 kb on - strand, within A4249_RS15280at 3093.526 kb on - strand, within A4249_RS15280at 3093.526 kb on - strand, within A4249_RS15280at 3093.526 kb on - strand, within A4249_RS15280at 3093.526 kb on - strand, within A4249_RS15280at 3093.526 kb on - strand, within A4249_RS15280at 3093.545 kb on + strand, within A4249_RS15280at 3093.545 kb on + strand, within A4249_RS15280at 3093.546 kb on - strand, within A4249_RS15280at 3093.546 kb on - strand, within A4249_RS15280at 3093.546 kb on - strand, within A4249_RS15280at 3093.546 kb on - strand, within A4249_RS15280at 3093.546 kb on - strand, within A4249_RS15280at 3093.614 kb on + strand, within A4249_RS15280at 3093.614 kb on + strand, within A4249_RS15280at 3093.614 kb on + strand, within A4249_RS15280at 3093.614 kb on + strand, within A4249_RS15280at 3093.615 kb on - strand, within A4249_RS15280at 3093.615 kb on - strand, within A4249_RS15280at 3093.615 kb on - strand, within A4249_RS15280at 3093.615 kb on - strand, within A4249_RS15280at 3093.615 kb on - strand, within A4249_RS15280at 3093.615 kb on - strand, within A4249_RS15280at 3093.705 kb on - strandat 3093.705 kb on - strandat 3093.705 kb on - strandat 3093.705 kb on - strandat 3093.705 kb on - strandat 3093.705 kb on - strandat 3093.705 kb on - strandat 3093.705 kb on - strandat 3093.705 kb on - strandat 3093.735 kb on + strandat 3093.737 kb on + strandat 3093.737 kb on + strandat 3093.737 kb on + strandat 3093.737 kb on + strandat 3093.737 kb on + strandat 3093.738 kb on - strandat 3093.738 kb on - strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.855 kb on + strandat 3093.856 kb on - strandat 3093.856 kb on - strandat 3093.930 kb on + strandat 3093.930 kb on + strandat 3093.930 kb on + strandat 3093.930 kb on + strandat 3093.931 kb on - strandat 3093.931 kb on - strandat 3093.931 kb on - strandat 3093.935 kb on + strandat 3093.935 kb on + strandat 3093.935 kb on + strandat 3093.936 kb on - strandat 3094.037 kb on + strandat 3094.083 kb on - strand, within A4249_RS16830at 3094.151 kb on + strand, within A4249_RS16830at 3094.152 kb on - strand, within A4249_RS16830at 3094.152 kb on - strand, within A4249_RS16830at 3094.156 kb on + strand, within A4249_RS16830at 3094.157 kb on - strand, within A4249_RS16830at 3094.498 kb on + strand, within A4249_RS15285at 3094.498 kb on + strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.499 kb on - strand, within A4249_RS15285at 3094.633 kb on + strandat 3094.645 kb on + strandat 3094.645 kb on + strandat 3094.645 kb on + strandat 3094.645 kb on + strandat 3094.646 kb on - strandat 3094.646 kb on - strandat 3094.715 kb on + strandat 3094.715 kb on + strandat 3094.715 kb on + strandat 3094.715 kb on + strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.716 kb on - strandat 3094.894 kb on + strandat 3094.894 kb on + strandat 3094.894 kb on + strandat 3094.894 kb on + strandat 3094.894 kb on + strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3094.895 kb on - strandat 3095.049 kb on + strand, within A4249_RS15290at 3095.049 kb on + strand, within A4249_RS15290at 3095.049 kb on + strand, within A4249_RS15290at 3095.049 kb on + strand, within A4249_RS15290at 3095.049 kb on + strand, within A4249_RS15290at 3095.050 kb on - strand, within A4249_RS15290at 3095.050 kb on - strand, within A4249_RS15290at 3095.050 kb on - strand, within A4249_RS15290at 3095.050 kb on - strand, within A4249_RS15290at 3095.091 kb on + strand, within A4249_RS15290at 3095.238 kb on + strand, within A4249_RS15290at 3095.238 kb on + strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.239 kb on - strand, within A4249_RS15290at 3095.251 kb on - strand, within A4249_RS15290at 3095.251 kb on - strand, within A4249_RS15290at 3095.293 kb on - strand, within A4249_RS15290at 3095.293 kb on - strand, within A4249_RS15290at 3095.293 kb on - strand, within A4249_RS15290at 3095.375 kb on + strand, within A4249_RS15290at 3095.398 kb on + strand, within A4249_RS15290at 3095.398 kb on + strand, within A4249_RS15290at 3095.399 kb on - strand, within A4249_RS15290at 3095.399 kb on - strand, within A4249_RS15290

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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3,093,221 + A4249_RS15280 0.60 -1.3
3,093,221 + A4249_RS15280 0.60 -0.2
3,093,221 + A4249_RS15280 0.60 -0.9
3,093,222 - A4249_RS15280 0.60 -0.3
3,093,222 - A4249_RS15280 0.60 +0.8
3,093,222 - A4249_RS15280 0.60 +0.3
3,093,222 - A4249_RS15280 0.60 +1.3
3,093,303 + A4249_RS15280 0.66 -0.4
3,093,311 + A4249_RS15280 0.66 -1.4
3,093,380 + A4249_RS15280 0.70 +0.1
3,093,380 + A4249_RS15280 0.70 -0.3
3,093,380 + A4249_RS15280 0.70 -0.4
3,093,380 + A4249_RS15280 0.70 -0.8
3,093,380 + A4249_RS15280 0.70 +0.1
3,093,380 + A4249_RS15280 0.70 +0.7
3,093,380 + A4249_RS15280 0.70 +0.6
3,093,380 + A4249_RS15280 0.70 -0.8
3,093,380 + A4249_RS15280 0.70 -0.2
3,093,380 + A4249_RS15280 0.70 +0.6
3,093,381 - A4249_RS15280 0.70 -0.1
3,093,381 - A4249_RS15280 0.70 -0.4
3,093,381 - A4249_RS15280 0.70 +0.3
3,093,381 - A4249_RS15280 0.70 -0.2
3,093,381 - A4249_RS15280 0.70 +1.8
3,093,381 - A4249_RS15280 0.70 -0.2
3,093,381 - A4249_RS15280 0.70 -0.1
3,093,381 - A4249_RS15280 0.70 -0.2
3,093,381 - A4249_RS15280 0.70 +0.5
3,093,381 - A4249_RS15280 0.70 -1.4
3,093,381 - A4249_RS15280 0.70 -0.1
3,093,383 + A4249_RS15280 0.71 -0.9
3,093,383 + A4249_RS15280 0.71 -0.9
3,093,383 + A4249_RS15280 0.71 +0.1
3,093,384 - A4249_RS15280 0.71 +0.8
3,093,384 - A4249_RS15280 0.71 +0.1
3,093,384 - A4249_RS15280 0.71 +0.1
3,093,417 - A4249_RS15280 0.73 +0.4
3,093,455 + A4249_RS15280 0.75 -0.6
3,093,455 + A4249_RS15280 0.75 +0.1
3,093,456 - A4249_RS15280 0.75 -0.3
3,093,456 - A4249_RS15280 0.75 -0.5
3,093,525 + A4249_RS15280 0.79 +0.4
3,093,525 + A4249_RS15280 0.79 -0.1
3,093,526 - A4249_RS15280 0.79 +0.1
3,093,526 - A4249_RS15280 0.79 -0.0
3,093,526 - A4249_RS15280 0.79 -0.7
3,093,526 - A4249_RS15280 0.79 -0.1
3,093,526 - A4249_RS15280 0.79 -2.0
3,093,526 - A4249_RS15280 0.79 +0.5
3,093,545 + A4249_RS15280 0.81 -0.9
3,093,545 + A4249_RS15280 0.81 -0.3
3,093,546 - A4249_RS15280 0.81 +1.9
3,093,546 - A4249_RS15280 0.81 -0.5
3,093,546 - A4249_RS15280 0.81 +0.6
3,093,546 - A4249_RS15280 0.81 +0.8
3,093,546 - A4249_RS15280 0.81 -0.2
3,093,614 + A4249_RS15280 0.85 +0.6
3,093,614 + A4249_RS15280 0.85 +0.5
3,093,614 + A4249_RS15280 0.85 -0.2
3,093,614 + A4249_RS15280 0.85 +0.6
3,093,615 - A4249_RS15280 0.85 -0.3
3,093,615 - A4249_RS15280 0.85 +0.9
3,093,615 - A4249_RS15280 0.85 +0.0
3,093,615 - A4249_RS15280 0.85 +0.4
3,093,615 - A4249_RS15280 0.85 -0.6
3,093,615 - A4249_RS15280 0.85 -0.5
3,093,705 - -0.7
3,093,705 - -0.0
3,093,705 - -0.0
3,093,705 - -0.2
3,093,705 - +0.7
3,093,705 - +0.4
3,093,705 - +0.0
3,093,705 - +0.0
3,093,705 - -1.1
3,093,735 + -0.6
3,093,737 + +0.2
3,093,737 + -1.3
3,093,737 + +1.4
3,093,737 + -0.0
3,093,737 + -0.1
3,093,738 - -0.9
3,093,738 - +0.2
3,093,855 + -0.3
3,093,855 + -1.4
3,093,855 + +0.4
3,093,855 + -0.7
3,093,855 + +0.8
3,093,855 + +0.0
3,093,855 + +0.5
3,093,855 + +0.4
3,093,855 + -0.0
3,093,855 + +0.1
3,093,856 - +0.0
3,093,856 - +0.6
3,093,930 + -0.4
3,093,930 + -0.6
3,093,930 + -1.6
3,093,930 + +0.6
3,093,931 - -0.9
3,093,931 - +0.5
3,093,931 - +0.4
3,093,935 + +1.2
3,093,935 + +0.4
3,093,935 + -0.0
3,093,936 - +0.2
3,094,037 + -0.3
3,094,083 - A4249_RS16830 0.18 -0.3
3,094,151 + A4249_RS16830 0.65 -0.3
3,094,152 - A4249_RS16830 0.65 +0.7
3,094,152 - A4249_RS16830 0.65 +0.2
3,094,156 + A4249_RS16830 0.68 +0.0
3,094,157 - A4249_RS16830 0.69 +0.1
3,094,498 + A4249_RS15285 0.74 +0.2
3,094,498 + A4249_RS15285 0.74 -0.0
3,094,499 - A4249_RS15285 0.74 +0.4
3,094,499 - A4249_RS15285 0.74 -0.8
3,094,499 - A4249_RS15285 0.74 +0.2
3,094,499 - A4249_RS15285 0.74 -0.1
3,094,499 - A4249_RS15285 0.74 -1.2
3,094,499 - A4249_RS15285 0.74 -0.6
3,094,499 - A4249_RS15285 0.74 -1.0
3,094,633 + -0.6
3,094,645 + +0.4
3,094,645 + -0.5
3,094,645 + -0.5
3,094,645 + -0.4
3,094,646 - -0.3
3,094,646 - -0.1
3,094,715 + -1.4
3,094,715 + +0.9
3,094,715 + -0.9
3,094,715 + -0.8
3,094,716 - -0.9
3,094,716 - -0.9
3,094,716 - +0.1
3,094,716 - +1.3
3,094,716 - -0.1
3,094,716 - +0.1
3,094,716 - -0.1
3,094,894 + +0.3
3,094,894 + +1.0
3,094,894 + +0.2
3,094,894 + +0.6
3,094,894 + -0.3
3,094,895 - +0.5
3,094,895 - -2.5
3,094,895 - +0.3
3,094,895 - +0.2
3,094,895 - -0.1
3,094,895 - +0.5
3,094,895 - -0.7
3,094,895 - -0.3
3,094,895 - -0.2
3,094,895 - +0.6
3,094,895 - -0.4
3,094,895 - -1.1
3,094,895 - +0.6
3,095,049 + A4249_RS15290 0.10 -0.5
3,095,049 + A4249_RS15290 0.10 -0.0
3,095,049 + A4249_RS15290 0.10 +0.6
3,095,049 + A4249_RS15290 0.10 +1.0
3,095,049 + A4249_RS15290 0.10 -0.2
3,095,050 - A4249_RS15290 0.11 -0.4
3,095,050 - A4249_RS15290 0.11 -0.3
3,095,050 - A4249_RS15290 0.11 +0.7
3,095,050 - A4249_RS15290 0.11 +0.5
3,095,091 + A4249_RS15290 0.12 -2.0
3,095,238 + A4249_RS15290 0.19 -0.5
3,095,238 + A4249_RS15290 0.19 -0.5
3,095,239 - A4249_RS15290 0.19 -0.9
3,095,239 - A4249_RS15290 0.19 -0.7
3,095,239 - A4249_RS15290 0.19 +0.1
3,095,239 - A4249_RS15290 0.19 -0.2
3,095,239 - A4249_RS15290 0.19 +0.1
3,095,239 - A4249_RS15290 0.19 +0.2
3,095,239 - A4249_RS15290 0.19 -1.1
3,095,239 - A4249_RS15290 0.19 -0.0
3,095,251 - A4249_RS15290 0.20 +0.5
3,095,251 - A4249_RS15290 0.20 +0.0
3,095,293 - A4249_RS15290 0.22 -0.6
3,095,293 - A4249_RS15290 0.22 +1.3
3,095,293 - A4249_RS15290 0.22 -1.0
3,095,375 + A4249_RS15290 0.26 -0.0
3,095,398 + A4249_RS15290 0.27 +0.3
3,095,398 + A4249_RS15290 0.27 +0.0
3,095,399 - A4249_RS15290 0.27 +0.3
3,095,399 - A4249_RS15290 0.27 +0.7

Or see this region's nucleotide sequence