Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14480

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14475 and A4249_RS14480 are separated by 48 nucleotidesA4249_RS14480 and A4249_RS14485 are separated by 112 nucleotides A4249_RS14475: A4249_RS14475 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 2,927,712 to 2,928,848 _RS14475 A4249_RS14480: A4249_RS14480 - helix-turn-helix domain-containing protein, at 2,928,897 to 2,930,000 _RS14480 A4249_RS14485: A4249_RS14485 - phosphoenolpyruvate--protein phosphotransferase, at 2,930,113 to 2,932,389 _RS14485 Position (kb) 2928 2929 2930 2931Strain fitness (log2 ratio) -1 0 1at 2928.859 kb on + strandat 2928.859 kb on + strandat 2928.859 kb on + strandat 2928.859 kb on + strandat 2928.859 kb on + strandat 2928.859 kb on + strandat 2928.859 kb on + strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.860 kb on - strandat 2928.861 kb on + strandat 2928.861 kb on + strandat 2928.861 kb on + strandat 2928.861 kb on + strandat 2928.861 kb on + strandat 2928.862 kb on - strandat 2928.862 kb on - strandat 2928.862 kb on - strandat 2928.862 kb on - strandat 2928.862 kb on - strandat 2928.862 kb on - strandat 2928.862 kb on - strandat 2929.102 kb on + strand, within A4249_RS14480at 2929.300 kb on + strand, within A4249_RS14480at 2929.300 kb on + strand, within A4249_RS14480at 2929.300 kb on + strand, within A4249_RS14480at 2929.300 kb on + strand, within A4249_RS14480at 2929.301 kb on - strand, within A4249_RS14480at 2929.301 kb on - strand, within A4249_RS14480at 2929.301 kb on - strand, within A4249_RS14480at 2929.301 kb on - strand, within A4249_RS14480at 2929.420 kb on + strand, within A4249_RS14480at 2929.420 kb on + strand, within A4249_RS14480at 2929.420 kb on + strand, within A4249_RS14480at 2929.420 kb on + strand, within A4249_RS14480at 2929.420 kb on + strand, within A4249_RS14480at 2929.420 kb on + strand, within A4249_RS14480at 2929.421 kb on - strand, within A4249_RS14480at 2929.421 kb on - strand, within A4249_RS14480at 2929.421 kb on - strand, within A4249_RS14480at 2929.421 kb on - strand, within A4249_RS14480at 2929.421 kb on - strand, within A4249_RS14480at 2929.421 kb on - strand, within A4249_RS14480at 2929.421 kb on - strand, within A4249_RS14480at 2930.421 kb on - strand, within A4249_RS14485at 2930.459 kb on + strand, within A4249_RS14485at 2930.460 kb on - strand, within A4249_RS14485at 2930.465 kb on + strand, within A4249_RS14485at 2930.891 kb on + strand, within A4249_RS14485

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,928,859 + -0.9
2,928,859 + +0.2
2,928,859 + +0.1
2,928,859 + -0.5
2,928,859 + +0.3
2,928,859 + -0.0
2,928,859 + -0.2
2,928,860 - +1.0
2,928,860 - +0.1
2,928,860 - +0.2
2,928,860 - -0.4
2,928,860 - -0.0
2,928,860 - +0.5
2,928,860 - +0.9
2,928,860 - +1.3
2,928,860 - -0.4
2,928,860 - -0.7
2,928,860 - +0.9
2,928,861 + -0.3
2,928,861 + +0.0
2,928,861 + -0.2
2,928,861 + -0.7
2,928,861 + +0.6
2,928,862 - -0.5
2,928,862 - -0.2
2,928,862 - -0.1
2,928,862 - +0.6
2,928,862 - +0.0
2,928,862 - -0.1
2,928,862 - -1.0
2,929,102 + A4249_RS14480 0.19 -0.1
2,929,300 + A4249_RS14480 0.37 -0.1
2,929,300 + A4249_RS14480 0.37 +0.9
2,929,300 + A4249_RS14480 0.37 -0.3
2,929,300 + A4249_RS14480 0.37 -0.2
2,929,301 - A4249_RS14480 0.37 -0.6
2,929,301 - A4249_RS14480 0.37 -0.2
2,929,301 - A4249_RS14480 0.37 -0.1
2,929,301 - A4249_RS14480 0.37 +0.0
2,929,420 + A4249_RS14480 0.47 -0.2
2,929,420 + A4249_RS14480 0.47 +0.4
2,929,420 + A4249_RS14480 0.47 -0.8
2,929,420 + A4249_RS14480 0.47 +0.1
2,929,420 + A4249_RS14480 0.47 +0.4
2,929,420 + A4249_RS14480 0.47 -0.0
2,929,421 - A4249_RS14480 0.47 -1.2
2,929,421 - A4249_RS14480 0.47 +1.2
2,929,421 - A4249_RS14480 0.47 -0.4
2,929,421 - A4249_RS14480 0.47 +0.0
2,929,421 - A4249_RS14480 0.47 +0.0
2,929,421 - A4249_RS14480 0.47 -0.1
2,929,421 - A4249_RS14480 0.47 +0.7
2,930,421 - A4249_RS14485 0.14 +0.6
2,930,459 + A4249_RS14485 0.15 -0.7
2,930,460 - A4249_RS14485 0.15 +0.4
2,930,465 + A4249_RS14485 0.15 +0.1
2,930,891 + A4249_RS14485 0.34 -0.7

Or see this region's nucleotide sequence