Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS14390 and A4249_RS14395 are separated by 79 nucleotides A4249_RS14395 and A4249_RS16980 are separated by 71 nucleotides A4249_RS16980 and A4249_RS14400 overlap by 40 nucleotides A4249_RS14400 and A4249_RS14405 are separated by 91 nucleotides
A4249_RS14390: A4249_RS14390 - DNA cytosine methyltransferase, at 2,908,241 to 2,909,371
_RS14390
A4249_RS14395: A4249_RS14395 - hypothetical protein, at 2,909,451 to 2,909,906
_RS14395
A4249_RS16980: A4249_RS16980 - LytTR family transcriptional regulator DNA-binding domain-containing protein, at 2,909,978 to 2,910,091
_RS16980
A4249_RS14400: A4249_RS14400 - LytTR family transcriptional regulator DNA-binding domain-containing protein, at 2,910,052 to 2,910,741
_RS14400
A4249_RS14405: A4249_RS14405 - TetR/AcrR family transcriptional regulator, at 2,910,833 to 2,911,588
_RS14405
Position (kb)
2909
2910 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2908.455 kb on + strand, within A4249_RS14390 at 2908.455 kb on + strand, within A4249_RS14390 at 2908.455 kb on + strand, within A4249_RS14390 at 2908.455 kb on + strand, within A4249_RS14390 at 2908.455 kb on + strand, within A4249_RS14390 at 2908.455 kb on + strand, within A4249_RS14390 at 2908.455 kb on + strand, within A4249_RS14390 at 2908.455 kb on + strand, within A4249_RS14390 at 2908.455 kb on + strand, within A4249_RS14390 at 2908.456 kb on - strand, within A4249_RS14390 at 2908.456 kb on - strand, within A4249_RS14390 at 2908.456 kb on - strand, within A4249_RS14390 at 2908.456 kb on - strand, within A4249_RS14390 at 2908.456 kb on - strand, within A4249_RS14390 at 2908.456 kb on - strand, within A4249_RS14390 at 2908.456 kb on - strand, within A4249_RS14390 at 2908.921 kb on + strand, within A4249_RS14390 at 2908.922 kb on - strand, within A4249_RS14390 at 2908.924 kb on - strand, within A4249_RS14390 at 2908.924 kb on - strand, within A4249_RS14390 at 2909.382 kb on + strand at 2909.382 kb on + strand at 2909.383 kb on - strand at 2909.383 kb on - strand at 2909.514 kb on + strand, within A4249_RS14395 at 2909.658 kb on + strand, within A4249_RS14395 at 2909.658 kb on + strand, within A4249_RS14395 at 2909.658 kb on + strand, within A4249_RS14395 at 2909.658 kb on + strand, within A4249_RS14395 at 2909.659 kb on - strand, within A4249_RS14395 at 2909.814 kb on + strand, within A4249_RS14395 at 2909.815 kb on - strand, within A4249_RS14395 at 2910.216 kb on - strand, within A4249_RS14400 at 2910.216 kb on - strand, within A4249_RS14400 at 2910.425 kb on + strand, within A4249_RS14400 at 2910.425 kb on + strand, within A4249_RS14400 at 2910.608 kb on + strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.619 kb on + strand, within A4249_RS14400 at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.898 kb on - strand at 2910.898 kb on - strand at 2910.898 kb on - strand at 2910.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 2,908,455 + A4249_RS14390 0.19 +0.9 2,908,455 + A4249_RS14390 0.19 -0.2 2,908,455 + A4249_RS14390 0.19 -0.2 2,908,455 + A4249_RS14390 0.19 +0.3 2,908,455 + A4249_RS14390 0.19 +0.3 2,908,455 + A4249_RS14390 0.19 +0.4 2,908,455 + A4249_RS14390 0.19 +0.9 2,908,455 + A4249_RS14390 0.19 -0.5 2,908,455 + A4249_RS14390 0.19 +0.5 2,908,456 - A4249_RS14390 0.19 -0.6 2,908,456 - A4249_RS14390 0.19 +0.6 2,908,456 - A4249_RS14390 0.19 -0.2 2,908,456 - A4249_RS14390 0.19 -0.4 2,908,456 - A4249_RS14390 0.19 -0.6 2,908,456 - A4249_RS14390 0.19 +0.0 2,908,456 - A4249_RS14390 0.19 -1.8 2,908,921 + A4249_RS14390 0.60 -1.6 2,908,922 - A4249_RS14390 0.60 -0.0 2,908,924 - A4249_RS14390 0.60 +1.1 2,908,924 - A4249_RS14390 0.60 +2.6 2,909,382 + +0.5 2,909,382 + -0.1 2,909,383 - +0.5 2,909,383 - -0.6 2,909,514 + A4249_RS14395 0.14 -0.2 2,909,658 + A4249_RS14395 0.45 +0.6 2,909,658 + A4249_RS14395 0.45 +0.5 2,909,658 + A4249_RS14395 0.45 +2.4 2,909,658 + A4249_RS14395 0.45 -0.2 2,909,659 - A4249_RS14395 0.46 -1.4 2,909,814 + A4249_RS14395 0.80 -0.4 2,909,815 - A4249_RS14395 0.80 -0.2 2,910,216 - A4249_RS14400 0.24 -0.2 2,910,216 - A4249_RS14400 0.24 +0.8 2,910,425 + A4249_RS14400 0.54 +0.7 2,910,425 + A4249_RS14400 0.54 +0.4 2,910,608 + A4249_RS14400 0.81 +0.3 2,910,609 - A4249_RS14400 0.81 -0.3 2,910,609 - A4249_RS14400 0.81 +0.0 2,910,609 - A4249_RS14400 0.81 +0.0 2,910,609 - A4249_RS14400 0.81 +0.1 2,910,609 - A4249_RS14400 0.81 -0.2 2,910,609 - A4249_RS14400 0.81 -0.9 2,910,619 + A4249_RS14400 0.82 +0.5 2,910,895 + +0.1 2,910,895 + +0.9 2,910,895 + -0.4 2,910,895 + +0.5 2,910,895 + -0.5 2,910,895 + +0.7 2,910,895 + -1.3 2,910,895 + +1.0 2,910,895 + -1.0 2,910,895 + -0.2 2,910,895 + +0.8 2,910,895 + -2.4 2,910,895 + -1.3 2,910,896 - -0.1 2,910,896 - +1.0 2,910,896 - -0.0 2,910,896 - -0.0 2,910,896 - -0.1 2,910,896 - +0.3 2,910,896 - -0.2 2,910,896 - +0.1 2,910,896 - -0.1 2,910,897 + -0.6 2,910,897 + +1.1 2,910,897 + -1.1 2,910,897 + +0.2 2,910,897 + +1.0 2,910,897 + -0.7 2,910,897 + -0.3 2,910,897 + +0.0 2,910,897 + -0.1 2,910,898 - -0.9 2,910,898 - -0.2 2,910,898 - -0.5 2,910,898 - +0.2
Or see this region's nucleotide sequence