Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14385

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14375 and A4249_RS14380 are separated by 77 nucleotidesA4249_RS14380 and A4249_RS14385 are separated by 33 nucleotidesA4249_RS14385 and A4249_RS14390 are separated by 70 nucleotides A4249_RS14375: A4249_RS14375 - YdbH domain-containing protein, at 2,904,314 to 2,907,511 _RS14375 A4249_RS14380: A4249_RS14380 - YnbE family lipoprotein, at 2,907,589 to 2,907,777 _RS14380 A4249_RS14385: A4249_RS14385 - DUF1318 domain-containing protein, at 2,907,811 to 2,908,170 _RS14385 A4249_RS14390: A4249_RS14390 - DNA cytosine methyltransferase, at 2,908,241 to 2,909,371 _RS14390 Position (kb) 2907 2908 2909Strain fitness (log2 ratio) -2 -1 0 1 2at 2906.927 kb on + strand, within A4249_RS14375at 2906.928 kb on - strand, within A4249_RS14375at 2906.928 kb on - strand, within A4249_RS14375at 2906.928 kb on - strand, within A4249_RS14375at 2907.189 kb on - strand, within A4249_RS14375at 2907.189 kb on - strand, within A4249_RS14375at 2907.189 kb on - strand, within A4249_RS14375at 2907.549 kb on + strandat 2907.549 kb on + strandat 2907.549 kb on + strandat 2907.549 kb on + strandat 2907.549 kb on + strandat 2907.549 kb on + strandat 2907.549 kb on + strandat 2907.549 kb on + strandat 2907.550 kb on - strandat 2907.550 kb on - strandat 2907.550 kb on - strandat 2907.550 kb on - strandat 2907.550 kb on - strandat 2907.552 kb on + strandat 2907.552 kb on + strandat 2907.552 kb on + strandat 2907.553 kb on - strandat 2907.553 kb on - strandat 2907.694 kb on + strand, within A4249_RS14380at 2907.694 kb on + strand, within A4249_RS14380at 2907.694 kb on + strand, within A4249_RS14380at 2907.694 kb on + strand, within A4249_RS14380at 2907.695 kb on - strand, within A4249_RS14380at 2907.695 kb on - strand, within A4249_RS14380at 2907.695 kb on - strand, within A4249_RS14380at 2907.695 kb on - strand, within A4249_RS14380at 2907.695 kb on - strand, within A4249_RS14380at 2907.955 kb on + strand, within A4249_RS14385at 2907.955 kb on + strand, within A4249_RS14385at 2908.036 kb on + strand, within A4249_RS14385at 2908.036 kb on + strand, within A4249_RS14385at 2908.036 kb on + strand, within A4249_RS14385at 2908.037 kb on - strand, within A4249_RS14385at 2908.037 kb on - strand, within A4249_RS14385at 2908.135 kb on + strandat 2908.168 kb on + strandat 2908.168 kb on + strandat 2908.169 kb on - strandat 2908.200 kb on + strandat 2908.218 kb on + strandat 2908.218 kb on + strandat 2908.219 kb on - strandat 2908.219 kb on - strandat 2908.219 kb on - strandat 2908.368 kb on + strand, within A4249_RS14390at 2908.455 kb on + strand, within A4249_RS14390at 2908.455 kb on + strand, within A4249_RS14390at 2908.455 kb on + strand, within A4249_RS14390at 2908.455 kb on + strand, within A4249_RS14390at 2908.455 kb on + strand, within A4249_RS14390at 2908.455 kb on + strand, within A4249_RS14390at 2908.455 kb on + strand, within A4249_RS14390at 2908.455 kb on + strand, within A4249_RS14390at 2908.455 kb on + strand, within A4249_RS14390at 2908.456 kb on - strand, within A4249_RS14390at 2908.456 kb on - strand, within A4249_RS14390at 2908.456 kb on - strand, within A4249_RS14390at 2908.456 kb on - strand, within A4249_RS14390at 2908.456 kb on - strand, within A4249_RS14390at 2908.456 kb on - strand, within A4249_RS14390at 2908.456 kb on - strand, within A4249_RS14390at 2908.921 kb on + strand, within A4249_RS14390at 2908.922 kb on - strand, within A4249_RS14390at 2908.924 kb on - strand, within A4249_RS14390at 2908.924 kb on - strand, within A4249_RS14390

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,906,927 + A4249_RS14375 0.82 -0.0
2,906,928 - A4249_RS14375 0.82 -0.0
2,906,928 - A4249_RS14375 0.82 -0.1
2,906,928 - A4249_RS14375 0.82 -0.4
2,907,189 - A4249_RS14375 0.90 -0.2
2,907,189 - A4249_RS14375 0.90 -0.6
2,907,189 - A4249_RS14375 0.90 -0.6
2,907,549 + -1.2
2,907,549 + -0.9
2,907,549 + -0.2
2,907,549 + +0.4
2,907,549 + -0.5
2,907,549 + -1.4
2,907,549 + +0.3
2,907,549 + -1.0
2,907,550 - +0.8
2,907,550 - +0.2
2,907,550 - +0.3
2,907,550 - -0.2
2,907,550 - +0.2
2,907,552 + +0.7
2,907,552 + -0.2
2,907,552 + -0.4
2,907,553 - -1.1
2,907,553 - +0.1
2,907,694 + A4249_RS14380 0.56 -0.0
2,907,694 + A4249_RS14380 0.56 -0.3
2,907,694 + A4249_RS14380 0.56 -0.9
2,907,694 + A4249_RS14380 0.56 +0.1
2,907,695 - A4249_RS14380 0.56 -0.9
2,907,695 - A4249_RS14380 0.56 +0.2
2,907,695 - A4249_RS14380 0.56 -0.4
2,907,695 - A4249_RS14380 0.56 +0.2
2,907,695 - A4249_RS14380 0.56 +0.3
2,907,955 + A4249_RS14385 0.40 +0.1
2,907,955 + A4249_RS14385 0.40 +0.6
2,908,036 + A4249_RS14385 0.62 +0.0
2,908,036 + A4249_RS14385 0.62 -0.4
2,908,036 + A4249_RS14385 0.62 +0.5
2,908,037 - A4249_RS14385 0.63 -0.7
2,908,037 - A4249_RS14385 0.63 -0.3
2,908,135 + -0.0
2,908,168 + +0.1
2,908,168 + -1.3
2,908,169 - -0.3
2,908,200 + +0.7
2,908,218 + +0.4
2,908,218 + +0.3
2,908,219 - -0.4
2,908,219 - +1.0
2,908,219 - -0.2
2,908,368 + A4249_RS14390 0.11 +0.6
2,908,455 + A4249_RS14390 0.19 +0.9
2,908,455 + A4249_RS14390 0.19 -0.2
2,908,455 + A4249_RS14390 0.19 -0.2
2,908,455 + A4249_RS14390 0.19 +0.3
2,908,455 + A4249_RS14390 0.19 +0.3
2,908,455 + A4249_RS14390 0.19 +0.4
2,908,455 + A4249_RS14390 0.19 +0.9
2,908,455 + A4249_RS14390 0.19 -0.5
2,908,455 + A4249_RS14390 0.19 +0.5
2,908,456 - A4249_RS14390 0.19 -0.6
2,908,456 - A4249_RS14390 0.19 +0.6
2,908,456 - A4249_RS14390 0.19 -0.2
2,908,456 - A4249_RS14390 0.19 -0.4
2,908,456 - A4249_RS14390 0.19 -0.6
2,908,456 - A4249_RS14390 0.19 +0.0
2,908,456 - A4249_RS14390 0.19 -1.8
2,908,921 + A4249_RS14390 0.60 -1.6
2,908,922 - A4249_RS14390 0.60 -0.0
2,908,924 - A4249_RS14390 0.60 +1.1
2,908,924 - A4249_RS14390 0.60 +2.6

Or see this region's nucleotide sequence