Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13990

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS13980 and A4249_RS13985 are separated by 35 nucleotidesA4249_RS13985 and A4249_RS13990 are separated by 139 nucleotidesA4249_RS13990 and A4249_RS13995 overlap by 1 nucleotides A4249_RS13980: A4249_RS13980 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 2,819,389 to 2,820,105 _RS13980 A4249_RS13985: A4249_RS13985 - DUF1993 domain-containing protein, at 2,820,141 to 2,820,635 _RS13985 A4249_RS13990: A4249_RS13990 - ribosome maturation factor RimP, at 2,820,775 to 2,821,374 _RS13990 A4249_RS13995: A4249_RS13995 - transcription termination factor NusA, at 2,821,374 to 2,823,107 _RS13995 Position (kb) 2820 2821 2822Strain fitness (log2 ratio) -2 -1 0 1at 2819.853 kb on - strand, within A4249_RS13980at 2819.853 kb on - strand, within A4249_RS13980at 2819.853 kb on - strand, within A4249_RS13980at 2819.853 kb on - strand, within A4249_RS13980at 2819.853 kb on - strand, within A4249_RS13980at 2819.853 kb on - strand, within A4249_RS13980at 2819.853 kb on - strand, within A4249_RS13980at 2819.853 kb on - strand, within A4249_RS13980at 2819.936 kb on - strand, within A4249_RS13980at 2820.043 kb on + strandat 2820.111 kb on - strandat 2820.111 kb on - strandat 2820.111 kb on - strandat 2820.156 kb on + strandat 2820.157 kb on - strandat 2820.157 kb on - strandat 2820.157 kb on - strandat 2820.185 kb on + strandat 2820.185 kb on + strandat 2820.423 kb on + strand, within A4249_RS13985at 2820.424 kb on - strand, within A4249_RS13985at 2820.424 kb on - strand, within A4249_RS13985at 2820.424 kb on - strand, within A4249_RS13985at 2820.425 kb on + strand, within A4249_RS13985at 2820.425 kb on + strand, within A4249_RS13985at 2820.426 kb on - strand, within A4249_RS13985at 2820.522 kb on + strand, within A4249_RS13985at 2820.522 kb on + strand, within A4249_RS13985at 2820.523 kb on - strand, within A4249_RS13985at 2820.523 kb on - strand, within A4249_RS13985at 2820.523 kb on - strand, within A4249_RS13985at 2820.523 kb on - strand, within A4249_RS13985at 2820.573 kb on + strand, within A4249_RS13985at 2820.573 kb on + strand, within A4249_RS13985at 2820.573 kb on + strand, within A4249_RS13985at 2820.573 kb on + strand, within A4249_RS13985at 2820.573 kb on + strand, within A4249_RS13985at 2820.573 kb on + strand, within A4249_RS13985at 2820.573 kb on + strand, within A4249_RS13985at 2820.573 kb on + strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.574 kb on - strand, within A4249_RS13985at 2820.618 kb on + strandat 2820.618 kb on + strandat 2820.619 kb on - strandat 2820.619 kb on - strandat 2820.619 kb on - strandat 2820.681 kb on + strandat 2820.681 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,819,853 - A4249_RS13980 0.65 -0.1
2,819,853 - A4249_RS13980 0.65 +0.3
2,819,853 - A4249_RS13980 0.65 -0.7
2,819,853 - A4249_RS13980 0.65 -0.5
2,819,853 - A4249_RS13980 0.65 -0.7
2,819,853 - A4249_RS13980 0.65 +0.9
2,819,853 - A4249_RS13980 0.65 -0.3
2,819,853 - A4249_RS13980 0.65 -0.2
2,819,936 - A4249_RS13980 0.76 -0.5
2,820,043 + -0.6
2,820,111 - -0.0
2,820,111 - +0.4
2,820,111 - +0.1
2,820,156 + +0.0
2,820,157 - -0.5
2,820,157 - +0.5
2,820,157 - -1.8
2,820,185 + -0.8
2,820,185 + -0.3
2,820,423 + A4249_RS13985 0.57 -1.0
2,820,424 - A4249_RS13985 0.57 +0.3
2,820,424 - A4249_RS13985 0.57 +0.6
2,820,424 - A4249_RS13985 0.57 -1.3
2,820,425 + A4249_RS13985 0.57 +0.4
2,820,425 + A4249_RS13985 0.57 -1.0
2,820,426 - A4249_RS13985 0.58 -0.4
2,820,522 + A4249_RS13985 0.77 +0.9
2,820,522 + A4249_RS13985 0.77 -1.2
2,820,523 - A4249_RS13985 0.77 +0.0
2,820,523 - A4249_RS13985 0.77 +0.4
2,820,523 - A4249_RS13985 0.77 -1.0
2,820,523 - A4249_RS13985 0.77 +0.7
2,820,573 + A4249_RS13985 0.87 +1.1
2,820,573 + A4249_RS13985 0.87 -0.6
2,820,573 + A4249_RS13985 0.87 -0.9
2,820,573 + A4249_RS13985 0.87 +0.0
2,820,573 + A4249_RS13985 0.87 +0.2
2,820,573 + A4249_RS13985 0.87 +0.0
2,820,573 + A4249_RS13985 0.87 -0.9
2,820,573 + A4249_RS13985 0.87 -1.1
2,820,574 - A4249_RS13985 0.87 +1.1
2,820,574 - A4249_RS13985 0.87 -0.5
2,820,574 - A4249_RS13985 0.87 -0.6
2,820,574 - A4249_RS13985 0.87 +0.3
2,820,574 - A4249_RS13985 0.87 -0.1
2,820,574 - A4249_RS13985 0.87 -0.3
2,820,574 - A4249_RS13985 0.87 -0.3
2,820,574 - A4249_RS13985 0.87 -0.4
2,820,574 - A4249_RS13985 0.87 -0.9
2,820,574 - A4249_RS13985 0.87 -0.8
2,820,574 - A4249_RS13985 0.87 +0.8
2,820,618 + -1.1
2,820,618 + -0.5
2,820,619 - +0.1
2,820,619 - +0.2
2,820,619 - -0.7
2,820,681 + -0.4
2,820,681 + -0.7

Or see this region's nucleotide sequence