Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13860

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13845 and A4249_RS13850 are separated by 155 nucleotidesA4249_RS13850 and A4249_RS13855 are separated by 2 nucleotidesA4249_RS13855 and A4249_RS13860 are separated by 10 nucleotidesA4249_RS13860 and A4249_RS13865 are separated by 116 nucleotidesA4249_RS13865 and A4249_RS13870 are separated by 1 nucleotides A4249_RS13845: A4249_RS13845 - hypothetical protein, at 2,796,501 to 2,797,655 _RS13845 A4249_RS13850: A4249_RS13850 - twin transmembrane helix small protein, at 2,797,811 to 2,798,014 _RS13850 A4249_RS13855: A4249_RS13855 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 2,798,017 to 2,798,589 _RS13855 A4249_RS13860: A4249_RS13860 - hypothetical protein, at 2,798,600 to 2,798,944 _RS13860 A4249_RS13865: A4249_RS13865 - electron transfer flavoprotein subunit beta/FixA family protein, at 2,799,061 to 2,799,825 _RS13865 A4249_RS13870: A4249_RS13870 - electron transfer flavoprotein subunit alpha/FixB family protein, at 2,799,827 to 2,800,756 _RS13870 Position (kb) 2798 2799Strain fitness (log2 ratio) -2 -1 0 1 2at 2797.694 kb on + strandat 2797.694 kb on + strandat 2797.695 kb on - strandat 2797.706 kb on + strandat 2797.707 kb on - strandat 2797.707 kb on - strandat 2797.712 kb on - strandat 2797.799 kb on + strandat 2797.799 kb on + strandat 2797.800 kb on - strandat 2797.904 kb on + strand, within A4249_RS13850at 2797.904 kb on + strand, within A4249_RS13850at 2797.904 kb on + strand, within A4249_RS13850at 2797.905 kb on - strand, within A4249_RS13850at 2798.038 kb on + strandat 2798.038 kb on + strandat 2798.038 kb on + strandat 2798.038 kb on + strandat 2798.039 kb on - strandat 2798.039 kb on - strandat 2798.039 kb on - strandat 2798.039 kb on - strandat 2798.039 kb on - strandat 2798.119 kb on + strand, within A4249_RS13855at 2798.119 kb on + strand, within A4249_RS13855at 2798.120 kb on - strand, within A4249_RS13855at 2798.120 kb on - strand, within A4249_RS13855at 2798.120 kb on - strand, within A4249_RS13855at 2798.255 kb on + strand, within A4249_RS13855at 2798.255 kb on + strand, within A4249_RS13855at 2798.255 kb on + strand, within A4249_RS13855at 2798.255 kb on + strand, within A4249_RS13855at 2798.491 kb on + strand, within A4249_RS13855at 2798.491 kb on + strand, within A4249_RS13855at 2798.491 kb on + strand, within A4249_RS13855at 2798.491 kb on + strand, within A4249_RS13855at 2798.491 kb on + strand, within A4249_RS13855at 2798.492 kb on - strand, within A4249_RS13855at 2798.492 kb on - strand, within A4249_RS13855at 2798.492 kb on - strand, within A4249_RS13855at 2798.992 kb on + strandat 2798.992 kb on + strandat 2798.992 kb on + strandat 2798.993 kb on - strandat 2798.993 kb on - strandat 2798.993 kb on - strandat 2798.993 kb on - strandat 2798.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,797,694 + -1.4
2,797,694 + +1.9
2,797,695 - -0.7
2,797,706 + +0.8
2,797,707 - +0.8
2,797,707 - -0.4
2,797,712 - +0.2
2,797,799 + +0.4
2,797,799 + +0.1
2,797,800 - +0.5
2,797,904 + A4249_RS13850 0.46 +0.4
2,797,904 + A4249_RS13850 0.46 -0.1
2,797,904 + A4249_RS13850 0.46 -0.5
2,797,905 - A4249_RS13850 0.46 +1.0
2,798,038 + +0.2
2,798,038 + -0.4
2,798,038 + -0.4
2,798,038 + +0.6
2,798,039 - +1.9
2,798,039 - +0.1
2,798,039 - -2.1
2,798,039 - -0.6
2,798,039 - +0.3
2,798,119 + A4249_RS13855 0.18 +0.3
2,798,119 + A4249_RS13855 0.18 +0.6
2,798,120 - A4249_RS13855 0.18 -0.7
2,798,120 - A4249_RS13855 0.18 -0.2
2,798,120 - A4249_RS13855 0.18 +0.3
2,798,255 + A4249_RS13855 0.42 +0.0
2,798,255 + A4249_RS13855 0.42 +0.4
2,798,255 + A4249_RS13855 0.42 +1.1
2,798,255 + A4249_RS13855 0.42 -1.0
2,798,491 + A4249_RS13855 0.83 -1.0
2,798,491 + A4249_RS13855 0.83 -1.3
2,798,491 + A4249_RS13855 0.83 +0.4
2,798,491 + A4249_RS13855 0.83 -0.6
2,798,491 + A4249_RS13855 0.83 +0.0
2,798,492 - A4249_RS13855 0.83 -0.5
2,798,492 - A4249_RS13855 0.83 -0.6
2,798,492 - A4249_RS13855 0.83 -0.1
2,798,992 + -0.1
2,798,992 + -0.2
2,798,992 + +1.6
2,798,993 - -0.4
2,798,993 - +0.3
2,798,993 - +0.0
2,798,993 - -0.3
2,798,993 - -0.2

Or see this region's nucleotide sequence