Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12990

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12985 and A4249_RS12990 overlap by 8 nucleotidesA4249_RS12990 and A4249_RS12995 are separated by 42 nucleotides A4249_RS12985: A4249_RS12985 - GDP-mannose 4,6-dehydratase, at 2,605,075 to 2,606,067 _RS12985 A4249_RS12990: A4249_RS12990 - ABC transporter permease, at 2,606,060 to 2,606,878 _RS12990 A4249_RS12995: A4249_RS12995 - chain-length determining protein, at 2,606,921 to 2,608,084 _RS12995 Position (kb) 2606 2607Strain fitness (log2 ratio) -1 0 1 2at 2605.064 kb on + strandat 2605.064 kb on + strandat 2605.064 kb on + strandat 2605.064 kb on + strandat 2605.065 kb on - strandat 2605.212 kb on + strand, within A4249_RS12985at 2605.213 kb on - strand, within A4249_RS12985at 2605.437 kb on + strand, within A4249_RS12985at 2605.463 kb on + strand, within A4249_RS12985at 2605.463 kb on + strand, within A4249_RS12985at 2605.463 kb on + strand, within A4249_RS12985at 2605.463 kb on + strand, within A4249_RS12985at 2605.464 kb on - strand, within A4249_RS12985at 2605.464 kb on - strand, within A4249_RS12985at 2605.464 kb on - strand, within A4249_RS12985at 2605.464 kb on - strand, within A4249_RS12985at 2605.464 kb on - strand, within A4249_RS12985at 2605.464 kb on - strand, within A4249_RS12985at 2605.464 kb on - strand, within A4249_RS12985at 2605.465 kb on + strand, within A4249_RS12985at 2605.465 kb on + strand, within A4249_RS12985at 2605.466 kb on - strand, within A4249_RS12985at 2605.466 kb on - strand, within A4249_RS12985at 2605.528 kb on + strand, within A4249_RS12985at 2605.528 kb on + strand, within A4249_RS12985at 2605.528 kb on + strand, within A4249_RS12985at 2605.529 kb on - strand, within A4249_RS12985at 2605.529 kb on - strand, within A4249_RS12985at 2605.593 kb on + strand, within A4249_RS12985at 2605.599 kb on - strand, within A4249_RS12985at 2605.617 kb on + strand, within A4249_RS12985at 2605.617 kb on + strand, within A4249_RS12985at 2605.617 kb on + strand, within A4249_RS12985at 2605.617 kb on + strand, within A4249_RS12985at 2605.661 kb on + strand, within A4249_RS12985at 2605.662 kb on - strand, within A4249_RS12985at 2605.662 kb on - strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.757 kb on + strand, within A4249_RS12985at 2605.765 kb on + strand, within A4249_RS12985at 2605.765 kb on + strand, within A4249_RS12985at 2605.765 kb on + strand, within A4249_RS12985at 2605.781 kb on + strand, within A4249_RS12985at 2605.781 kb on + strand, within A4249_RS12985at 2605.781 kb on + strand, within A4249_RS12985at 2605.781 kb on + strand, within A4249_RS12985at 2605.781 kb on + strand, within A4249_RS12985at 2605.782 kb on - strand, within A4249_RS12985at 2605.813 kb on + strand, within A4249_RS12985at 2605.813 kb on + strand, within A4249_RS12985at 2605.813 kb on + strand, within A4249_RS12985at 2605.813 kb on + strand, within A4249_RS12985at 2605.813 kb on + strand, within A4249_RS12985at 2605.853 kb on + strand, within A4249_RS12985at 2605.853 kb on + strand, within A4249_RS12985at 2605.853 kb on + strand, within A4249_RS12985at 2606.026 kb on + strandat 2606.026 kb on + strandat 2606.054 kb on + strandat 2606.876 kb on + strandat 2606.894 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.915 kb on + strandat 2606.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,605,064 + -0.5
2,605,064 + -0.0
2,605,064 + -0.5
2,605,064 + +0.3
2,605,065 - +0.2
2,605,212 + A4249_RS12985 0.14 -0.3
2,605,213 - A4249_RS12985 0.14 +0.7
2,605,437 + A4249_RS12985 0.36 +0.1
2,605,463 + A4249_RS12985 0.39 -0.1
2,605,463 + A4249_RS12985 0.39 +0.4
2,605,463 + A4249_RS12985 0.39 +0.1
2,605,463 + A4249_RS12985 0.39 +0.5
2,605,464 - A4249_RS12985 0.39 +0.6
2,605,464 - A4249_RS12985 0.39 -0.0
2,605,464 - A4249_RS12985 0.39 +0.7
2,605,464 - A4249_RS12985 0.39 -0.6
2,605,464 - A4249_RS12985 0.39 -0.1
2,605,464 - A4249_RS12985 0.39 +1.7
2,605,464 - A4249_RS12985 0.39 +1.4
2,605,465 + A4249_RS12985 0.39 +0.1
2,605,465 + A4249_RS12985 0.39 -0.2
2,605,466 - A4249_RS12985 0.39 +0.4
2,605,466 - A4249_RS12985 0.39 -0.4
2,605,528 + A4249_RS12985 0.46 +0.2
2,605,528 + A4249_RS12985 0.46 +0.2
2,605,528 + A4249_RS12985 0.46 +0.4
2,605,529 - A4249_RS12985 0.46 -0.4
2,605,529 - A4249_RS12985 0.46 +0.2
2,605,593 + A4249_RS12985 0.52 +0.7
2,605,599 - A4249_RS12985 0.53 +0.6
2,605,617 + A4249_RS12985 0.55 -0.2
2,605,617 + A4249_RS12985 0.55 -0.2
2,605,617 + A4249_RS12985 0.55 +0.0
2,605,617 + A4249_RS12985 0.55 +0.0
2,605,661 + A4249_RS12985 0.59 -0.5
2,605,662 - A4249_RS12985 0.59 +0.4
2,605,662 - A4249_RS12985 0.59 -0.3
2,605,757 + A4249_RS12985 0.69 -0.4
2,605,757 + A4249_RS12985 0.69 -0.1
2,605,757 + A4249_RS12985 0.69 +0.5
2,605,757 + A4249_RS12985 0.69 +0.7
2,605,757 + A4249_RS12985 0.69 +0.0
2,605,757 + A4249_RS12985 0.69 -0.3
2,605,757 + A4249_RS12985 0.69 +0.5
2,605,757 + A4249_RS12985 0.69 -0.3
2,605,757 + A4249_RS12985 0.69 -0.2
2,605,757 + A4249_RS12985 0.69 -0.1
2,605,757 + A4249_RS12985 0.69 +0.1
2,605,757 + A4249_RS12985 0.69 -0.3
2,605,765 + A4249_RS12985 0.69 -0.2
2,605,765 + A4249_RS12985 0.69 +0.2
2,605,765 + A4249_RS12985 0.69 +0.4
2,605,781 + A4249_RS12985 0.71 -0.5
2,605,781 + A4249_RS12985 0.71 +2.6
2,605,781 + A4249_RS12985 0.71 +0.0
2,605,781 + A4249_RS12985 0.71 +1.3
2,605,781 + A4249_RS12985 0.71 +0.6
2,605,782 - A4249_RS12985 0.71 +1.4
2,605,813 + A4249_RS12985 0.74 -0.6
2,605,813 + A4249_RS12985 0.74 -0.3
2,605,813 + A4249_RS12985 0.74 +0.6
2,605,813 + A4249_RS12985 0.74 -0.9
2,605,813 + A4249_RS12985 0.74 -0.6
2,605,853 + A4249_RS12985 0.78 +0.0
2,605,853 + A4249_RS12985 0.78 -0.4
2,605,853 + A4249_RS12985 0.78 -0.8
2,606,026 + -1.4
2,606,026 + -0.2
2,606,054 + -0.2
2,606,876 + +0.0
2,606,894 + -0.5
2,606,906 + -0.1
2,606,906 + +0.5
2,606,906 + +1.2
2,606,906 + +1.4
2,606,906 + +0.6
2,606,906 + +1.2
2,606,906 + -0.1
2,606,915 + +0.7
2,606,915 + -0.0

Or see this region's nucleotide sequence