Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12795

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12780 and A4249_RS12785 are separated by 39 nucleotidesA4249_RS12785 and A4249_RS12790 are separated by 4 nucleotidesA4249_RS12790 and A4249_RS12795 overlap by 4 nucleotidesA4249_RS12795 and A4249_RS12800 are separated by 45 nucleotidesA4249_RS12800 and A4249_RS12805 are separated by 0 nucleotides A4249_RS12780: A4249_RS12780 - heme exporter protein CcmB, at 2,566,368 to 2,567,078 _RS12780 A4249_RS12785: A4249_RS12785 - heme ABC transporter permease, at 2,567,118 to 2,567,837 _RS12785 A4249_RS12790: A4249_RS12790 - heme exporter protein CcmD, at 2,567,842 to 2,568,060 _RS12790 A4249_RS12795: A4249_RS12795 - DsbE family thiol:disulfide interchange protein, at 2,568,057 to 2,568,617 _RS12795 A4249_RS12800: A4249_RS12800 - hypothetical protein, at 2,568,663 to 2,568,941 _RS12800 A4249_RS12805: A4249_RS12805 - M48 family metallopeptidase, at 2,568,942 to 2,569,697 _RS12805 Position (kb) 2568 2569Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2567.104 kb on + strandat 2567.105 kb on - strandat 2567.866 kb on + strand, within A4249_RS12790at 2568.044 kb on + strandat 2568.044 kb on + strandat 2568.544 kb on + strand, within A4249_RS12795at 2568.545 kb on - strand, within A4249_RS12795at 2568.921 kb on + strandat 2568.965 kb on + strandat 2568.965 kb on + strandat 2568.965 kb on + strandat 2568.965 kb on + strandat 2568.966 kb on - strandat 2568.966 kb on - strandat 2568.966 kb on - strandat 2568.966 kb on - strandat 2568.966 kb on - strandat 2568.967 kb on + strandat 2568.967 kb on + strandat 2568.967 kb on + strandat 2568.967 kb on + strandat 2568.968 kb on - strandat 2568.968 kb on - strandat 2568.968 kb on - strandat 2568.968 kb on - strandat 2568.968 kb on - strandat 2568.968 kb on - strandat 2568.968 kb on - strandat 2569.052 kb on + strand, within A4249_RS12805at 2569.052 kb on + strand, within A4249_RS12805at 2569.052 kb on + strand, within A4249_RS12805at 2569.052 kb on + strand, within A4249_RS12805at 2569.053 kb on - strand, within A4249_RS12805at 2569.053 kb on - strand, within A4249_RS12805at 2569.103 kb on + strand, within A4249_RS12805at 2569.103 kb on + strand, within A4249_RS12805at 2569.103 kb on + strand, within A4249_RS12805at 2569.103 kb on + strand, within A4249_RS12805at 2569.104 kb on - strand, within A4249_RS12805at 2569.104 kb on - strand, within A4249_RS12805at 2569.104 kb on - strand, within A4249_RS12805at 2569.104 kb on - strand, within A4249_RS12805at 2569.104 kb on - strand, within A4249_RS12805at 2569.105 kb on + strand, within A4249_RS12805at 2569.105 kb on + strand, within A4249_RS12805at 2569.105 kb on + strand, within A4249_RS12805at 2569.105 kb on + strand, within A4249_RS12805at 2569.105 kb on + strand, within A4249_RS12805at 2569.105 kb on + strand, within A4249_RS12805at 2569.105 kb on + strand, within A4249_RS12805at 2569.105 kb on + strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.106 kb on - strand, within A4249_RS12805at 2569.189 kb on + strand, within A4249_RS12805at 2569.190 kb on - strand, within A4249_RS12805at 2569.190 kb on - strand, within A4249_RS12805at 2569.210 kb on + strand, within A4249_RS12805at 2569.348 kb on - strand, within A4249_RS12805at 2569.432 kb on + strand, within A4249_RS12805at 2569.432 kb on + strand, within A4249_RS12805at 2569.433 kb on - strand, within A4249_RS12805at 2569.433 kb on - strand, within A4249_RS12805at 2569.433 kb on - strand, within A4249_RS12805at 2569.433 kb on - strand, within A4249_RS12805at 2569.433 kb on - strand, within A4249_RS12805at 2569.433 kb on - strand, within A4249_RS12805at 2569.433 kb on - strand, within A4249_RS12805at 2569.433 kb on - strand, within A4249_RS12805at 2569.590 kb on + strand, within A4249_RS12805at 2569.591 kb on - strand, within A4249_RS12805

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,567,104 + +0.3
2,567,105 - +0.3
2,567,866 + A4249_RS12790 0.11 +3.2
2,568,044 + +0.5
2,568,044 + +0.8
2,568,544 + A4249_RS12795 0.87 -0.6
2,568,545 - A4249_RS12795 0.87 -0.5
2,568,921 + +0.3
2,568,965 + +0.4
2,568,965 + +0.3
2,568,965 + +0.3
2,568,965 + +0.3
2,568,966 - -1.6
2,568,966 - -0.1
2,568,966 - -0.6
2,568,966 - -0.9
2,568,966 - +0.6
2,568,967 + -0.6
2,568,967 + -0.3
2,568,967 + -0.0
2,568,967 + +0.6
2,568,968 - +0.0
2,568,968 - +0.5
2,568,968 - +0.6
2,568,968 - +0.2
2,568,968 - +0.2
2,568,968 - -0.4
2,568,968 - -0.1
2,569,052 + A4249_RS12805 0.15 +0.0
2,569,052 + A4249_RS12805 0.15 +0.7
2,569,052 + A4249_RS12805 0.15 -0.1
2,569,052 + A4249_RS12805 0.15 +0.2
2,569,053 - A4249_RS12805 0.15 +0.2
2,569,053 - A4249_RS12805 0.15 -1.0
2,569,103 + A4249_RS12805 0.21 +0.2
2,569,103 + A4249_RS12805 0.21 +0.0
2,569,103 + A4249_RS12805 0.21 +0.9
2,569,103 + A4249_RS12805 0.21 +0.4
2,569,104 - A4249_RS12805 0.21 +0.0
2,569,104 - A4249_RS12805 0.21 -0.1
2,569,104 - A4249_RS12805 0.21 +1.1
2,569,104 - A4249_RS12805 0.21 +0.6
2,569,104 - A4249_RS12805 0.21 -0.0
2,569,105 + A4249_RS12805 0.22 -1.0
2,569,105 + A4249_RS12805 0.22 +1.6
2,569,105 + A4249_RS12805 0.22 -0.3
2,569,105 + A4249_RS12805 0.22 +0.7
2,569,105 + A4249_RS12805 0.22 -0.4
2,569,105 + A4249_RS12805 0.22 -1.0
2,569,105 + A4249_RS12805 0.22 -0.8
2,569,105 + A4249_RS12805 0.22 +0.2
2,569,106 - A4249_RS12805 0.22 +0.1
2,569,106 - A4249_RS12805 0.22 +0.6
2,569,106 - A4249_RS12805 0.22 +0.5
2,569,106 - A4249_RS12805 0.22 +0.3
2,569,106 - A4249_RS12805 0.22 -0.6
2,569,106 - A4249_RS12805 0.22 +0.3
2,569,106 - A4249_RS12805 0.22 +0.2
2,569,106 - A4249_RS12805 0.22 -0.2
2,569,106 - A4249_RS12805 0.22 -0.4
2,569,106 - A4249_RS12805 0.22 -0.3
2,569,106 - A4249_RS12805 0.22 -0.6
2,569,106 - A4249_RS12805 0.22 +1.3
2,569,106 - A4249_RS12805 0.22 -2.7
2,569,106 - A4249_RS12805 0.22 -0.5
2,569,189 + A4249_RS12805 0.33 -0.2
2,569,190 - A4249_RS12805 0.33 +0.3
2,569,190 - A4249_RS12805 0.33 +0.1
2,569,210 + A4249_RS12805 0.35 +0.2
2,569,348 - A4249_RS12805 0.54 +0.0
2,569,432 + A4249_RS12805 0.65 +0.2
2,569,432 + A4249_RS12805 0.65 +0.6
2,569,433 - A4249_RS12805 0.65 +0.0
2,569,433 - A4249_RS12805 0.65 +0.8
2,569,433 - A4249_RS12805 0.65 +0.2
2,569,433 - A4249_RS12805 0.65 -0.4
2,569,433 - A4249_RS12805 0.65 -1.0
2,569,433 - A4249_RS12805 0.65 +0.0
2,569,433 - A4249_RS12805 0.65 +0.3
2,569,433 - A4249_RS12805 0.65 -0.3
2,569,590 + A4249_RS12805 0.86 -1.2
2,569,591 - A4249_RS12805 0.86 -0.2

Or see this region's nucleotide sequence