Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12415

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS12410 and A4249_RS12415 are separated by 156 nucleotidesA4249_RS12415 and A4249_RS12420 are separated by 191 nucleotidesA4249_RS12420 and A4249_RS12425 are separated by 66 nucleotides A4249_RS12410: A4249_RS12410 - M13 family peptidase, at 2,488,233 to 2,490,356 _RS12410 A4249_RS12415: A4249_RS12415 - cation:proton antiporter, at 2,490,513 to 2,492,348 _RS12415 A4249_RS12420: A4249_RS12420 - TetR/AcrR family transcriptional regulator, at 2,492,540 to 2,493,181 _RS12420 A4249_RS12425: A4249_RS12425 - Smr/MutS family protein, at 2,493,248 to 2,493,829 _RS12425 Position (kb) 2490 2491 2492 2493Strain fitness (log2 ratio) -2 -1 0 1 2at 2489.521 kb on + strand, within A4249_RS12410at 2489.521 kb on + strand, within A4249_RS12410at 2489.521 kb on + strand, within A4249_RS12410at 2489.522 kb on - strand, within A4249_RS12410at 2489.522 kb on - strand, within A4249_RS12410at 2489.653 kb on + strand, within A4249_RS12410at 2489.653 kb on + strand, within A4249_RS12410at 2489.653 kb on + strand, within A4249_RS12410at 2489.653 kb on + strand, within A4249_RS12410at 2489.653 kb on + strand, within A4249_RS12410at 2489.653 kb on + strand, within A4249_RS12410at 2489.654 kb on - strand, within A4249_RS12410at 2489.654 kb on - strand, within A4249_RS12410at 2489.654 kb on - strand, within A4249_RS12410at 2489.654 kb on - strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.662 kb on + strand, within A4249_RS12410at 2489.663 kb on - strand, within A4249_RS12410at 2489.663 kb on - strand, within A4249_RS12410at 2489.663 kb on - strand, within A4249_RS12410at 2489.663 kb on - strand, within A4249_RS12410at 2489.698 kb on + strand, within A4249_RS12410at 2489.701 kb on + strand, within A4249_RS12410at 2489.701 kb on + strand, within A4249_RS12410at 2489.701 kb on + strand, within A4249_RS12410at 2489.749 kb on + strand, within A4249_RS12410at 2489.829 kb on - strand, within A4249_RS12410at 2489.829 kb on - strand, within A4249_RS12410at 2489.829 kb on - strand, within A4249_RS12410at 2489.829 kb on - strand, within A4249_RS12410at 2489.830 kb on + strand, within A4249_RS12410at 2489.830 kb on + strand, within A4249_RS12410at 2489.830 kb on + strand, within A4249_RS12410at 2489.830 kb on + strand, within A4249_RS12410at 2489.830 kb on + strand, within A4249_RS12410at 2489.830 kb on + strand, within A4249_RS12410at 2489.830 kb on + strand, within A4249_RS12410at 2489.830 kb on + strand, within A4249_RS12410at 2489.831 kb on - strand, within A4249_RS12410at 2489.831 kb on - strand, within A4249_RS12410at 2489.831 kb on - strand, within A4249_RS12410at 2489.831 kb on - strand, within A4249_RS12410at 2489.831 kb on - strand, within A4249_RS12410at 2489.878 kb on + strand, within A4249_RS12410at 2489.878 kb on + strand, within A4249_RS12410at 2489.878 kb on + strand, within A4249_RS12410at 2489.879 kb on - strand, within A4249_RS12410at 2489.879 kb on - strand, within A4249_RS12410at 2489.929 kb on + strand, within A4249_RS12410at 2489.929 kb on + strand, within A4249_RS12410at 2489.929 kb on + strand, within A4249_RS12410at 2489.929 kb on + strand, within A4249_RS12410at 2489.930 kb on - strand, within A4249_RS12410at 2489.930 kb on - strand, within A4249_RS12410at 2490.058 kb on + strand, within A4249_RS12410at 2490.058 kb on + strand, within A4249_RS12410at 2490.058 kb on + strand, within A4249_RS12410at 2490.059 kb on - strand, within A4249_RS12410at 2490.059 kb on - strand, within A4249_RS12410at 2490.059 kb on - strand, within A4249_RS12410at 2490.059 kb on - strand, within A4249_RS12410at 2490.112 kb on + strand, within A4249_RS12410at 2490.112 kb on + strand, within A4249_RS12410at 2490.113 kb on - strand, within A4249_RS12410at 2490.181 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.360 kb on + strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.361 kb on - strandat 2490.406 kb on + strandat 2490.406 kb on + strandat 2490.406 kb on + strandat 2490.406 kb on + strandat 2490.406 kb on + strandat 2490.407 kb on - strandat 2490.491 kb on + strandat 2490.491 kb on + strandat 2490.492 kb on - strandat 2490.492 kb on - strandat 2490.534 kb on + strandat 2490.534 kb on + strandat 2490.534 kb on + strandat 2490.535 kb on - strandat 2490.535 kb on - strandat 2490.535 kb on - strandat 2490.535 kb on - strandat 2490.536 kb on + strandat 2490.536 kb on + strandat 2490.536 kb on + strandat 2490.536 kb on + strandat 2490.536 kb on + strandat 2490.536 kb on + strandat 2490.536 kb on + strandat 2490.537 kb on - strandat 2490.537 kb on - strandat 2490.537 kb on - strandat 2490.537 kb on - strandat 2491.899 kb on - strand, within A4249_RS12415at 2491.929 kb on + strand, within A4249_RS12415at 2491.929 kb on + strand, within A4249_RS12415at 2491.929 kb on + strand, within A4249_RS12415at 2491.929 kb on + strand, within A4249_RS12415at 2491.929 kb on + strand, within A4249_RS12415at 2491.930 kb on - strand, within A4249_RS12415at 2491.930 kb on - strand, within A4249_RS12415at 2491.930 kb on - strand, within A4249_RS12415at 2491.930 kb on - strand, within A4249_RS12415at 2491.930 kb on - strand, within A4249_RS12415at 2491.930 kb on - strand, within A4249_RS12415at 2491.930 kb on - strand, within A4249_RS12415at 2492.109 kb on + strand, within A4249_RS12415at 2492.109 kb on + strand, within A4249_RS12415at 2492.109 kb on + strand, within A4249_RS12415at 2492.109 kb on + strand, within A4249_RS12415at 2492.110 kb on - strand, within A4249_RS12415at 2492.110 kb on - strand, within A4249_RS12415at 2492.110 kb on - strand, within A4249_RS12415at 2492.314 kb on + strandat 2492.314 kb on + strandat 2492.346 kb on + strandat 2492.347 kb on - strandat 2492.360 kb on + strandat 2492.360 kb on + strandat 2492.360 kb on + strandat 2492.361 kb on - strandat 2492.361 kb on - strandat 2492.472 kb on + strandat 2492.472 kb on + strandat 2492.473 kb on - strandat 2492.473 kb on - strandat 2492.473 kb on - strandat 2492.521 kb on - strandat 2492.537 kb on + strandat 2492.537 kb on + strandat 2492.538 kb on - strandat 2492.539 kb on + strandat 2492.539 kb on + strandat 2492.539 kb on + strandat 2492.539 kb on + strandat 2492.540 kb on - strandat 2492.548 kb on + strandat 2492.549 kb on - strandat 2492.660 kb on + strand, within A4249_RS12420at 2492.661 kb on - strand, within A4249_RS12420at 2492.661 kb on - strand, within A4249_RS12420at 2492.773 kb on + strand, within A4249_RS12420at 2492.773 kb on + strand, within A4249_RS12420at 2492.774 kb on - strand, within A4249_RS12420at 2493.068 kb on + strand, within A4249_RS12420at 2493.068 kb on + strand, within A4249_RS12420at 2493.068 kb on + strand, within A4249_RS12420at 2493.069 kb on - strand, within A4249_RS12420at 2493.095 kb on + strand, within A4249_RS12420at 2493.096 kb on - strand, within A4249_RS12420at 2493.130 kb on + strandat 2493.131 kb on - strandat 2493.179 kb on + strandat 2493.179 kb on + strandat 2493.180 kb on - strandat 2493.180 kb on - strandat 2493.180 kb on - strandat 2493.180 kb on - strandat 2493.249 kb on + strandat 2493.249 kb on + strandat 2493.249 kb on + strandat 2493.250 kb on - strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.274 kb on - strandat 2493.274 kb on - strandat 2493.274 kb on - strandat 2493.274 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,489,521 + A4249_RS12410 0.61 -0.2
2,489,521 + A4249_RS12410 0.61 +0.1
2,489,521 + A4249_RS12410 0.61 -0.2
2,489,522 - A4249_RS12410 0.61 +0.2
2,489,522 - A4249_RS12410 0.61 +0.3
2,489,653 + A4249_RS12410 0.67 -0.8
2,489,653 + A4249_RS12410 0.67 +0.2
2,489,653 + A4249_RS12410 0.67 +0.2
2,489,653 + A4249_RS12410 0.67 +0.4
2,489,653 + A4249_RS12410 0.67 -0.3
2,489,653 + A4249_RS12410 0.67 -1.5
2,489,654 - A4249_RS12410 0.67 +1.4
2,489,654 - A4249_RS12410 0.67 -0.3
2,489,654 - A4249_RS12410 0.67 +1.0
2,489,654 - A4249_RS12410 0.67 +0.2
2,489,662 + A4249_RS12410 0.67 +0.0
2,489,662 + A4249_RS12410 0.67 +0.5
2,489,662 + A4249_RS12410 0.67 -1.3
2,489,662 + A4249_RS12410 0.67 -0.1
2,489,662 + A4249_RS12410 0.67 +0.1
2,489,662 + A4249_RS12410 0.67 -0.5
2,489,662 + A4249_RS12410 0.67 -0.2
2,489,662 + A4249_RS12410 0.67 +0.4
2,489,662 + A4249_RS12410 0.67 -0.4
2,489,662 + A4249_RS12410 0.67 -1.3
2,489,663 - A4249_RS12410 0.67 -2.4
2,489,663 - A4249_RS12410 0.67 +1.3
2,489,663 - A4249_RS12410 0.67 -0.3
2,489,663 - A4249_RS12410 0.67 +0.2
2,489,698 + A4249_RS12410 0.69 +0.3
2,489,701 + A4249_RS12410 0.69 +0.3
2,489,701 + A4249_RS12410 0.69 -0.2
2,489,701 + A4249_RS12410 0.69 +0.0
2,489,749 + A4249_RS12410 0.71 -0.1
2,489,829 - A4249_RS12410 0.75 +0.6
2,489,829 - A4249_RS12410 0.75 -1.3
2,489,829 - A4249_RS12410 0.75 -0.2
2,489,829 - A4249_RS12410 0.75 +0.2
2,489,830 + A4249_RS12410 0.75 +1.4
2,489,830 + A4249_RS12410 0.75 -0.6
2,489,830 + A4249_RS12410 0.75 +0.7
2,489,830 + A4249_RS12410 0.75 +0.7
2,489,830 + A4249_RS12410 0.75 -0.0
2,489,830 + A4249_RS12410 0.75 -0.2
2,489,830 + A4249_RS12410 0.75 -0.5
2,489,830 + A4249_RS12410 0.75 -0.2
2,489,831 - A4249_RS12410 0.75 -0.7
2,489,831 - A4249_RS12410 0.75 +0.3
2,489,831 - A4249_RS12410 0.75 -0.9
2,489,831 - A4249_RS12410 0.75 -0.0
2,489,831 - A4249_RS12410 0.75 +0.2
2,489,878 + A4249_RS12410 0.77 +0.6
2,489,878 + A4249_RS12410 0.77 +0.8
2,489,878 + A4249_RS12410 0.77 -0.7
2,489,879 - A4249_RS12410 0.77 +0.9
2,489,879 - A4249_RS12410 0.77 +0.6
2,489,929 + A4249_RS12410 0.80 -1.2
2,489,929 + A4249_RS12410 0.80 +1.1
2,489,929 + A4249_RS12410 0.80 -0.2
2,489,929 + A4249_RS12410 0.80 +0.3
2,489,930 - A4249_RS12410 0.80 -0.7
2,489,930 - A4249_RS12410 0.80 -0.3
2,490,058 + A4249_RS12410 0.86 -0.6
2,490,058 + A4249_RS12410 0.86 -0.3
2,490,058 + A4249_RS12410 0.86 +0.4
2,490,059 - A4249_RS12410 0.86 -0.7
2,490,059 - A4249_RS12410 0.86 -1.7
2,490,059 - A4249_RS12410 0.86 +1.1
2,490,059 - A4249_RS12410 0.86 +0.4
2,490,112 + A4249_RS12410 0.88 -1.1
2,490,112 + A4249_RS12410 0.88 +0.4
2,490,113 - A4249_RS12410 0.89 -0.5
2,490,181 + -0.1
2,490,360 + -0.2
2,490,360 + -0.4
2,490,360 + -0.2
2,490,360 + +0.4
2,490,360 + -0.4
2,490,360 + +0.2
2,490,360 + +1.5
2,490,360 + -0.1
2,490,360 + -0.4
2,490,360 + +0.4
2,490,360 + +1.2
2,490,360 + +0.4
2,490,361 - -0.4
2,490,361 - -0.4
2,490,361 - +1.1
2,490,361 - +2.2
2,490,361 - +0.1
2,490,361 - +0.2
2,490,361 - -0.1
2,490,361 - -0.4
2,490,361 - -0.1
2,490,361 - -0.0
2,490,361 - +0.3
2,490,361 - -0.5
2,490,361 - +0.6
2,490,406 + +0.5
2,490,406 + +0.8
2,490,406 + +0.1
2,490,406 + +0.7
2,490,406 + -0.3
2,490,407 - +0.8
2,490,491 + -0.3
2,490,491 + -0.5
2,490,492 - +0.1
2,490,492 - +0.0
2,490,534 + -0.4
2,490,534 + -0.7
2,490,534 + +1.0
2,490,535 - +0.4
2,490,535 - -0.5
2,490,535 - +0.2
2,490,535 - +1.7
2,490,536 + +0.8
2,490,536 + -0.0
2,490,536 + +0.2
2,490,536 + -0.9
2,490,536 + +1.2
2,490,536 + -0.2
2,490,536 + -0.4
2,490,537 - +0.7
2,490,537 - -0.2
2,490,537 - +0.2
2,490,537 - +0.2
2,491,899 - A4249_RS12415 0.75 +0.2
2,491,929 + A4249_RS12415 0.77 +0.7
2,491,929 + A4249_RS12415 0.77 +0.3
2,491,929 + A4249_RS12415 0.77 -0.6
2,491,929 + A4249_RS12415 0.77 +0.9
2,491,929 + A4249_RS12415 0.77 -0.3
2,491,930 - A4249_RS12415 0.77 +0.8
2,491,930 - A4249_RS12415 0.77 -0.3
2,491,930 - A4249_RS12415 0.77 +0.4
2,491,930 - A4249_RS12415 0.77 -1.3
2,491,930 - A4249_RS12415 0.77 +0.2
2,491,930 - A4249_RS12415 0.77 +0.4
2,491,930 - A4249_RS12415 0.77 -0.5
2,492,109 + A4249_RS12415 0.87 -1.0
2,492,109 + A4249_RS12415 0.87 -0.1
2,492,109 + A4249_RS12415 0.87 +0.6
2,492,109 + A4249_RS12415 0.87 -0.3
2,492,110 - A4249_RS12415 0.87 +0.3
2,492,110 - A4249_RS12415 0.87 -0.8
2,492,110 - A4249_RS12415 0.87 +0.8
2,492,314 + +1.2
2,492,314 + -0.8
2,492,346 + -0.2
2,492,347 - -0.4
2,492,360 + -1.5
2,492,360 + -0.3
2,492,360 + +1.7
2,492,361 - +1.4
2,492,361 - -0.3
2,492,472 + +0.2
2,492,472 + +0.3
2,492,473 - +0.1
2,492,473 - -0.3
2,492,473 - +0.3
2,492,521 - -0.2
2,492,537 + +0.3
2,492,537 + -0.0
2,492,538 - -0.4
2,492,539 + +1.2
2,492,539 + +0.5
2,492,539 + -0.7
2,492,539 + +0.2
2,492,540 - -0.9
2,492,548 + -0.4
2,492,549 - +0.0
2,492,660 + A4249_RS12420 0.19 -0.4
2,492,661 - A4249_RS12420 0.19 -1.0
2,492,661 - A4249_RS12420 0.19 +0.4
2,492,773 + A4249_RS12420 0.36 +0.5
2,492,773 + A4249_RS12420 0.36 -0.7
2,492,774 - A4249_RS12420 0.36 -0.0
2,493,068 + A4249_RS12420 0.82 -0.2
2,493,068 + A4249_RS12420 0.82 +0.8
2,493,068 + A4249_RS12420 0.82 -0.8
2,493,069 - A4249_RS12420 0.82 -0.5
2,493,095 + A4249_RS12420 0.86 +0.8
2,493,096 - A4249_RS12420 0.87 +1.3
2,493,130 + -0.1
2,493,131 - -1.0
2,493,179 + -0.4
2,493,179 + +0.2
2,493,180 - -0.2
2,493,180 - +0.7
2,493,180 - -1.4
2,493,180 - +0.8
2,493,249 + -0.6
2,493,249 + +1.1
2,493,249 + -0.1
2,493,250 - -0.5
2,493,273 + -0.0
2,493,273 + -0.5
2,493,273 + -0.8
2,493,273 + -0.4
2,493,273 + -0.1
2,493,273 + +0.9
2,493,273 + +0.6
2,493,273 + -0.6
2,493,273 + -0.0
2,493,273 + +0.3
2,493,273 + +0.9
2,493,274 - +0.4
2,493,274 - +0.4
2,493,274 - +0.8
2,493,274 - +0.8

Or see this region's nucleotide sequence