Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11540

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS11530 and A4249_RS11535 are separated by 64 nucleotidesA4249_RS11535 and A4249_RS11540 overlap by 1 nucleotidesA4249_RS11540 and A4249_RS11545 are separated by 35 nucleotides A4249_RS11530: A4249_RS11530 - peroxiredoxin, at 2,321,279 to 2,321,929 _RS11530 A4249_RS11535: A4249_RS11535 - MBL fold metallo-hydrolase, at 2,321,994 to 2,322,893 _RS11535 A4249_RS11540: A4249_RS11540 - substrate-binding domain-containing protein, at 2,322,893 to 2,323,666 _RS11540 A4249_RS11545: A4249_RS11545 - L,D-transpeptidase family protein, at 2,323,702 to 2,325,192 _RS11545 Position (kb) 2322 2323 2324Strain fitness (log2 ratio) -1 0 1at 2322.063 kb on + strandat 2322.063 kb on + strandat 2322.063 kb on + strandat 2322.063 kb on + strandat 2322.063 kb on + strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.174 kb on + strand, within A4249_RS11535at 2322.174 kb on + strand, within A4249_RS11535at 2322.174 kb on + strand, within A4249_RS11535at 2322.174 kb on + strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.330 kb on + strand, within A4249_RS11535at 2322.331 kb on - strand, within A4249_RS11535at 2322.331 kb on - strand, within A4249_RS11535at 2322.331 kb on - strand, within A4249_RS11535at 2322.331 kb on - strand, within A4249_RS11535at 2322.331 kb on - strand, within A4249_RS11535at 2322.331 kb on - strand, within A4249_RS11535at 2322.331 kb on - strand, within A4249_RS11535at 2322.465 kb on + strand, within A4249_RS11535at 2322.465 kb on + strand, within A4249_RS11535at 2322.465 kb on + strand, within A4249_RS11535at 2322.465 kb on + strand, within A4249_RS11535at 2322.465 kb on + strand, within A4249_RS11535at 2322.465 kb on + strand, within A4249_RS11535at 2322.465 kb on + strand, within A4249_RS11535at 2322.465 kb on + strand, within A4249_RS11535at 2322.466 kb on - strand, within A4249_RS11535at 2322.466 kb on - strand, within A4249_RS11535at 2322.466 kb on - strand, within A4249_RS11535at 2322.466 kb on - strand, within A4249_RS11535at 2322.513 kb on + strand, within A4249_RS11535at 2322.513 kb on + strand, within A4249_RS11535at 2322.514 kb on - strand, within A4249_RS11535at 2322.627 kb on + strand, within A4249_RS11535at 2322.628 kb on - strand, within A4249_RS11535at 2322.628 kb on - strand, within A4249_RS11535at 2322.628 kb on - strand, within A4249_RS11535at 2322.780 kb on + strand, within A4249_RS11535at 2322.780 kb on + strand, within A4249_RS11535at 2322.780 kb on + strand, within A4249_RS11535at 2322.780 kb on + strand, within A4249_RS11535at 2322.781 kb on - strand, within A4249_RS11535at 2322.843 kb on + strandat 2322.843 kb on + strandat 2322.843 kb on + strandat 2322.844 kb on - strandat 2322.844 kb on - strandat 2322.983 kb on + strand, within A4249_RS11540at 2322.983 kb on + strand, within A4249_RS11540at 2322.984 kb on - strand, within A4249_RS11540at 2323.031 kb on + strand, within A4249_RS11540at 2323.031 kb on + strand, within A4249_RS11540at 2323.031 kb on + strand, within A4249_RS11540at 2323.031 kb on + strand, within A4249_RS11540at 2323.032 kb on - strand, within A4249_RS11540at 2323.032 kb on - strand, within A4249_RS11540at 2323.032 kb on - strand, within A4249_RS11540at 2323.032 kb on - strand, within A4249_RS11540at 2323.202 kb on + strand, within A4249_RS11540at 2323.394 kb on + strand, within A4249_RS11540at 2323.394 kb on + strand, within A4249_RS11540at 2323.394 kb on + strand, within A4249_RS11540at 2323.394 kb on + strand, within A4249_RS11540at 2323.395 kb on - strand, within A4249_RS11540at 2323.395 kb on - strand, within A4249_RS11540at 2323.533 kb on - strand, within A4249_RS11540at 2323.596 kb on + strandat 2323.596 kb on + strandat 2323.596 kb on + strandat 2323.597 kb on - strandat 2323.664 kb on + strandat 2323.664 kb on + strandat 2323.664 kb on + strandat 2323.665 kb on - strandat 2323.665 kb on - strandat 2323.665 kb on - strandat 2323.675 kb on + strandat 2323.675 kb on + strandat 2323.676 kb on - strandat 2323.811 kb on - strandat 2323.838 kb on - strandat 2323.838 kb on - strandat 2323.838 kb on - strandat 2323.926 kb on - strand, within A4249_RS11545at 2323.926 kb on - strand, within A4249_RS11545at 2323.926 kb on - strand, within A4249_RS11545at 2324.341 kb on + strand, within A4249_RS11545at 2324.342 kb on - strand, within A4249_RS11545at 2324.557 kb on + strand, within A4249_RS11545at 2324.557 kb on + strand, within A4249_RS11545at 2324.557 kb on + strand, within A4249_RS11545at 2324.558 kb on - strand, within A4249_RS11545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,322,063 + -0.4
2,322,063 + -0.2
2,322,063 + +0.8
2,322,063 + -0.2
2,322,063 + +0.6
2,322,064 - +0.4
2,322,064 - +0.8
2,322,064 - -0.4
2,322,064 - -0.2
2,322,064 - +0.6
2,322,064 - +0.2
2,322,174 + A4249_RS11535 0.20 -0.1
2,322,174 + A4249_RS11535 0.20 -0.0
2,322,174 + A4249_RS11535 0.20 -0.9
2,322,174 + A4249_RS11535 0.20 -0.1
2,322,175 - A4249_RS11535 0.20 -0.3
2,322,175 - A4249_RS11535 0.20 -0.1
2,322,175 - A4249_RS11535 0.20 +0.2
2,322,175 - A4249_RS11535 0.20 -0.2
2,322,175 - A4249_RS11535 0.20 -0.2
2,322,175 - A4249_RS11535 0.20 -0.2
2,322,175 - A4249_RS11535 0.20 -0.3
2,322,330 + A4249_RS11535 0.37 -1.2
2,322,331 - A4249_RS11535 0.37 +0.1
2,322,331 - A4249_RS11535 0.37 +0.2
2,322,331 - A4249_RS11535 0.37 +0.1
2,322,331 - A4249_RS11535 0.37 -0.4
2,322,331 - A4249_RS11535 0.37 +0.2
2,322,331 - A4249_RS11535 0.37 +0.4
2,322,331 - A4249_RS11535 0.37 -0.1
2,322,465 + A4249_RS11535 0.52 -1.5
2,322,465 + A4249_RS11535 0.52 -0.1
2,322,465 + A4249_RS11535 0.52 -0.0
2,322,465 + A4249_RS11535 0.52 -0.0
2,322,465 + A4249_RS11535 0.52 +0.5
2,322,465 + A4249_RS11535 0.52 +1.4
2,322,465 + A4249_RS11535 0.52 -0.3
2,322,465 + A4249_RS11535 0.52 +0.6
2,322,466 - A4249_RS11535 0.52 +0.0
2,322,466 - A4249_RS11535 0.52 -0.1
2,322,466 - A4249_RS11535 0.52 +0.3
2,322,466 - A4249_RS11535 0.52 -0.2
2,322,513 + A4249_RS11535 0.58 -0.4
2,322,513 + A4249_RS11535 0.58 +0.8
2,322,514 - A4249_RS11535 0.58 -0.4
2,322,627 + A4249_RS11535 0.70 +0.2
2,322,628 - A4249_RS11535 0.70 +0.3
2,322,628 - A4249_RS11535 0.70 -1.5
2,322,628 - A4249_RS11535 0.70 -0.1
2,322,780 + A4249_RS11535 0.87 -0.4
2,322,780 + A4249_RS11535 0.87 +0.1
2,322,780 + A4249_RS11535 0.87 -0.1
2,322,780 + A4249_RS11535 0.87 +1.3
2,322,781 - A4249_RS11535 0.87 -0.4
2,322,843 + +0.2
2,322,843 + -1.0
2,322,843 + -1.0
2,322,844 - -0.3
2,322,844 - +0.2
2,322,983 + A4249_RS11540 0.12 -0.4
2,322,983 + A4249_RS11540 0.12 -0.4
2,322,984 - A4249_RS11540 0.12 -1.0
2,323,031 + A4249_RS11540 0.18 +1.0
2,323,031 + A4249_RS11540 0.18 +0.2
2,323,031 + A4249_RS11540 0.18 +1.2
2,323,031 + A4249_RS11540 0.18 +0.2
2,323,032 - A4249_RS11540 0.18 -1.1
2,323,032 - A4249_RS11540 0.18 +1.6
2,323,032 - A4249_RS11540 0.18 -0.4
2,323,032 - A4249_RS11540 0.18 +0.2
2,323,202 + A4249_RS11540 0.40 -0.9
2,323,394 + A4249_RS11540 0.65 -1.1
2,323,394 + A4249_RS11540 0.65 -0.3
2,323,394 + A4249_RS11540 0.65 +0.5
2,323,394 + A4249_RS11540 0.65 -0.2
2,323,395 - A4249_RS11540 0.65 +0.0
2,323,395 - A4249_RS11540 0.65 -0.4
2,323,533 - A4249_RS11540 0.83 +0.3
2,323,596 + -1.4
2,323,596 + +0.3
2,323,596 + -1.0
2,323,597 - +0.5
2,323,664 + -0.0
2,323,664 + -0.8
2,323,664 + +0.0
2,323,665 - +0.3
2,323,665 - -0.3
2,323,665 - -0.1
2,323,675 + -0.1
2,323,675 + +0.8
2,323,676 - -0.2
2,323,811 - -0.4
2,323,838 - -1.4
2,323,838 - -0.8
2,323,838 - +0.0
2,323,926 - A4249_RS11545 0.15 +0.0
2,323,926 - A4249_RS11545 0.15 -0.2
2,323,926 - A4249_RS11545 0.15 +0.0
2,324,341 + A4249_RS11545 0.43 +0.4
2,324,342 - A4249_RS11545 0.43 +0.2
2,324,557 + A4249_RS11545 0.57 +1.0
2,324,557 + A4249_RS11545 0.57 -0.7
2,324,557 + A4249_RS11545 0.57 -0.5
2,324,558 - A4249_RS11545 0.57 +0.2

Or see this region's nucleotide sequence