Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11525

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11515 and A4249_RS11520 are separated by 11 nucleotidesA4249_RS11520 and A4249_RS11525 are separated by 29 nucleotidesA4249_RS11525 and A4249_RS11530 are separated by 99 nucleotidesA4249_RS11530 and A4249_RS11535 are separated by 64 nucleotides A4249_RS11515: A4249_RS11515 - bifunctional metallophosphatase/5'-nucleotidase, at 2,318,569 to 2,319,996 _RS11515 A4249_RS11520: A4249_RS11520 - class I SAM-dependent methyltransferase, at 2,320,008 to 2,320,625 _RS11520 A4249_RS11525: A4249_RS11525 - DsrE family protein, at 2,320,655 to 2,321,179 _RS11525 A4249_RS11530: A4249_RS11530 - peroxiredoxin, at 2,321,279 to 2,321,929 _RS11530 A4249_RS11535: A4249_RS11535 - MBL fold metallo-hydrolase, at 2,321,994 to 2,322,893 _RS11535 Position (kb) 2320 2321 2322Strain fitness (log2 ratio) -2 -1 0 1at 2319.712 kb on + strand, within A4249_RS11515at 2319.713 kb on - strand, within A4249_RS11515at 2319.730 kb on + strand, within A4249_RS11515at 2319.730 kb on + strand, within A4249_RS11515at 2319.731 kb on - strand, within A4249_RS11515at 2319.731 kb on - strand, within A4249_RS11515at 2319.731 kb on - strand, within A4249_RS11515at 2319.841 kb on + strand, within A4249_RS11515at 2319.841 kb on + strand, within A4249_RS11515at 2319.841 kb on + strand, within A4249_RS11515at 2319.841 kb on + strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.951 kb on + strandat 2319.951 kb on + strandat 2319.952 kb on - strandat 2319.952 kb on - strandat 2320.007 kb on + strandat 2320.007 kb on + strandat 2320.008 kb on - strandat 2320.047 kb on + strandat 2320.048 kb on - strandat 2320.048 kb on - strandat 2320.062 kb on + strandat 2320.062 kb on + strandat 2320.062 kb on + strandat 2320.063 kb on - strandat 2320.063 kb on - strandat 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.452 kb on + strand, within A4249_RS11520at 2320.488 kb on + strand, within A4249_RS11520at 2320.488 kb on + strand, within A4249_RS11520at 2320.489 kb on - strand, within A4249_RS11520at 2320.489 kb on - strand, within A4249_RS11520at 2320.790 kb on + strand, within A4249_RS11525at 2320.790 kb on + strand, within A4249_RS11525at 2320.791 kb on - strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.874 kb on - strand, within A4249_RS11525at 2320.874 kb on - strand, within A4249_RS11525at 2320.874 kb on - strand, within A4249_RS11525at 2321.160 kb on - strandat 2321.160 kb on - strandat 2321.240 kb on - strandat 2321.272 kb on + strandat 2321.273 kb on - strandat 2321.273 kb on - strandat 2321.360 kb on + strand, within A4249_RS11530at 2321.493 kb on + strand, within A4249_RS11530at 2321.514 kb on + strand, within A4249_RS11530at 2321.514 kb on + strand, within A4249_RS11530at 2321.514 kb on + strand, within A4249_RS11530at 2321.514 kb on + strand, within A4249_RS11530at 2321.515 kb on - strand, within A4249_RS11530at 2321.603 kb on + strand, within A4249_RS11530at 2321.603 kb on + strand, within A4249_RS11530at 2321.693 kb on + strand, within A4249_RS11530at 2321.693 kb on + strand, within A4249_RS11530at 2321.693 kb on + strand, within A4249_RS11530at 2321.693 kb on + strand, within A4249_RS11530at 2321.693 kb on + strand, within A4249_RS11530at 2321.693 kb on + strand, within A4249_RS11530at 2321.693 kb on + strand, within A4249_RS11530at 2321.694 kb on - strand, within A4249_RS11530at 2321.694 kb on - strand, within A4249_RS11530at 2321.694 kb on - strand, within A4249_RS11530at 2321.694 kb on - strand, within A4249_RS11530at 2321.694 kb on - strand, within A4249_RS11530at 2321.694 kb on - strand, within A4249_RS11530at 2321.694 kb on - strand, within A4249_RS11530at 2321.695 kb on - strand, within A4249_RS11530at 2321.696 kb on + strand, within A4249_RS11530at 2321.696 kb on + strand, within A4249_RS11530at 2321.696 kb on + strand, within A4249_RS11530at 2321.696 kb on + strand, within A4249_RS11530at 2321.697 kb on - strand, within A4249_RS11530at 2321.697 kb on - strand, within A4249_RS11530at 2321.697 kb on - strand, within A4249_RS11530at 2321.867 kb on + strandat 2321.867 kb on + strandat 2321.868 kb on - strandat 2321.868 kb on - strandat 2321.868 kb on - strandat 2321.868 kb on - strandat 2321.868 kb on - strandat 2321.873 kb on + strandat 2321.873 kb on + strandat 2321.873 kb on + strandat 2321.885 kb on + strandat 2321.885 kb on + strandat 2321.886 kb on - strandat 2321.886 kb on - strandat 2322.063 kb on + strandat 2322.063 kb on + strandat 2322.063 kb on + strandat 2322.063 kb on + strandat 2322.063 kb on + strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.064 kb on - strandat 2322.174 kb on + strand, within A4249_RS11535at 2322.174 kb on + strand, within A4249_RS11535at 2322.174 kb on + strand, within A4249_RS11535at 2322.174 kb on + strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535at 2322.175 kb on - strand, within A4249_RS11535

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,319,712 + A4249_RS11515 0.80 -0.1
2,319,713 - A4249_RS11515 0.80 +0.5
2,319,730 + A4249_RS11515 0.81 +0.1
2,319,730 + A4249_RS11515 0.81 -0.5
2,319,731 - A4249_RS11515 0.81 -0.0
2,319,731 - A4249_RS11515 0.81 +0.4
2,319,731 - A4249_RS11515 0.81 -0.4
2,319,841 + A4249_RS11515 0.89 +0.9
2,319,841 + A4249_RS11515 0.89 -0.1
2,319,841 + A4249_RS11515 0.89 -0.2
2,319,841 + A4249_RS11515 0.89 -0.2
2,319,842 - A4249_RS11515 0.89 +1.2
2,319,842 - A4249_RS11515 0.89 -0.4
2,319,842 - A4249_RS11515 0.89 -0.1
2,319,842 - A4249_RS11515 0.89 -0.3
2,319,842 - A4249_RS11515 0.89 +0.2
2,319,951 + +0.0
2,319,951 + -0.1
2,319,952 - -2.0
2,319,952 - -2.5
2,320,007 + +0.2
2,320,007 + +0.3
2,320,008 - -1.2
2,320,047 + +0.1
2,320,048 - -0.7
2,320,048 - +0.1
2,320,062 + -0.1
2,320,062 + +0.7
2,320,062 + -0.2
2,320,063 - -0.3
2,320,063 - -0.0
2,320,385 + A4249_RS11520 0.61 -0.4
2,320,385 + A4249_RS11520 0.61 -0.5
2,320,385 + A4249_RS11520 0.61 -0.1
2,320,385 + A4249_RS11520 0.61 -0.5
2,320,385 + A4249_RS11520 0.61 +0.3
2,320,385 + A4249_RS11520 0.61 +0.1
2,320,386 - A4249_RS11520 0.61 +0.4
2,320,386 - A4249_RS11520 0.61 -0.5
2,320,386 - A4249_RS11520 0.61 -0.6
2,320,386 - A4249_RS11520 0.61 +0.8
2,320,386 - A4249_RS11520 0.61 -0.4
2,320,452 + A4249_RS11520 0.72 +0.5
2,320,488 + A4249_RS11520 0.78 -0.3
2,320,488 + A4249_RS11520 0.78 -0.0
2,320,489 - A4249_RS11520 0.78 +0.3
2,320,489 - A4249_RS11520 0.78 -0.4
2,320,790 + A4249_RS11525 0.26 +0.9
2,320,790 + A4249_RS11525 0.26 -0.3
2,320,791 - A4249_RS11525 0.26 -0.4
2,320,873 + A4249_RS11525 0.42 -0.9
2,320,873 + A4249_RS11525 0.42 -0.3
2,320,873 + A4249_RS11525 0.42 +0.1
2,320,873 + A4249_RS11525 0.42 -0.1
2,320,873 + A4249_RS11525 0.42 -0.2
2,320,874 - A4249_RS11525 0.42 +0.4
2,320,874 - A4249_RS11525 0.42 -0.3
2,320,874 - A4249_RS11525 0.42 -0.8
2,321,160 - -0.3
2,321,160 - -0.7
2,321,240 - +0.7
2,321,272 + +0.4
2,321,273 - +0.8
2,321,273 - -0.1
2,321,360 + A4249_RS11530 0.12 -0.4
2,321,493 + A4249_RS11530 0.33 -2.4
2,321,514 + A4249_RS11530 0.36 -0.6
2,321,514 + A4249_RS11530 0.36 -0.7
2,321,514 + A4249_RS11530 0.36 +0.3
2,321,514 + A4249_RS11530 0.36 +0.6
2,321,515 - A4249_RS11530 0.36 -0.3
2,321,603 + A4249_RS11530 0.50 -0.7
2,321,603 + A4249_RS11530 0.50 +0.1
2,321,693 + A4249_RS11530 0.64 -1.0
2,321,693 + A4249_RS11530 0.64 -0.1
2,321,693 + A4249_RS11530 0.64 +0.1
2,321,693 + A4249_RS11530 0.64 +0.7
2,321,693 + A4249_RS11530 0.64 -0.2
2,321,693 + A4249_RS11530 0.64 +0.5
2,321,693 + A4249_RS11530 0.64 +0.6
2,321,694 - A4249_RS11530 0.64 -0.2
2,321,694 - A4249_RS11530 0.64 -1.4
2,321,694 - A4249_RS11530 0.64 -0.0
2,321,694 - A4249_RS11530 0.64 +0.2
2,321,694 - A4249_RS11530 0.64 -0.2
2,321,694 - A4249_RS11530 0.64 +0.2
2,321,694 - A4249_RS11530 0.64 -0.1
2,321,695 - A4249_RS11530 0.64 -1.3
2,321,696 + A4249_RS11530 0.64 -0.4
2,321,696 + A4249_RS11530 0.64 -0.2
2,321,696 + A4249_RS11530 0.64 -0.1
2,321,696 + A4249_RS11530 0.64 +0.9
2,321,697 - A4249_RS11530 0.64 +0.2
2,321,697 - A4249_RS11530 0.64 -1.2
2,321,697 - A4249_RS11530 0.64 +0.7
2,321,867 + +0.4
2,321,867 + -0.3
2,321,868 - -0.1
2,321,868 - -0.1
2,321,868 - -1.3
2,321,868 - -2.4
2,321,868 - +0.2
2,321,873 + +0.7
2,321,873 + -2.0
2,321,873 + -0.1
2,321,885 + -0.6
2,321,885 + +0.2
2,321,886 - -0.2
2,321,886 - +0.2
2,322,063 + -0.4
2,322,063 + -0.2
2,322,063 + +0.8
2,322,063 + -0.2
2,322,063 + +0.6
2,322,064 - +0.4
2,322,064 - +0.8
2,322,064 - -0.4
2,322,064 - -0.2
2,322,064 - +0.6
2,322,064 - +0.2
2,322,174 + A4249_RS11535 0.20 -0.1
2,322,174 + A4249_RS11535 0.20 -0.0
2,322,174 + A4249_RS11535 0.20 -0.9
2,322,174 + A4249_RS11535 0.20 -0.1
2,322,175 - A4249_RS11535 0.20 -0.3
2,322,175 - A4249_RS11535 0.20 -0.1
2,322,175 - A4249_RS11535 0.20 +0.2
2,322,175 - A4249_RS11535 0.20 -0.2
2,322,175 - A4249_RS11535 0.20 -0.2
2,322,175 - A4249_RS11535 0.20 -0.2
2,322,175 - A4249_RS11535 0.20 -0.3

Or see this region's nucleotide sequence