Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11420

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS11410 and A4249_RS11415 are separated by 160 nucleotidesA4249_RS11415 and A4249_RS11420 overlap by 8 nucleotidesA4249_RS11420 and A4249_RS11425 are separated by 71 nucleotidesA4249_RS11425 and A4249_RS11430 overlap by 4 nucleotides A4249_RS11410: A4249_RS11410 - 50S ribosomal protein L21, at 2,296,521 to 2,297,075 _RS11410 A4249_RS11415: A4249_RS11415 - phosphoribosyltransferase family protein, at 2,297,236 to 2,297,769 _RS11415 A4249_RS11420: A4249_RS11420 - zinc-ribbon domain-containing protein, at 2,297,762 to 2,298,700 _RS11420 A4249_RS11425: A4249_RS11425 - ATP-binding cassette domain-containing protein, at 2,298,772 to 2,299,482 _RS11425 A4249_RS11430: A4249_RS11430 - cell division protein, at 2,299,479 to 2,300,393 _RS11430 Position (kb) 2297 2298 2299Strain fitness (log2 ratio) -2 -1 0 1at 2297.294 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.552 kb on + strand, within A4249_RS11415at 2297.552 kb on + strand, within A4249_RS11415at 2297.552 kb on + strand, within A4249_RS11415at 2297.552 kb on + strand, within A4249_RS11415at 2297.553 kb on - strand, within A4249_RS11415at 2298.092 kb on + strand, within A4249_RS11420at 2298.289 kb on - strand, within A4249_RS11420at 2298.666 kb on + strandat 2298.666 kb on + strandat 2298.666 kb on + strandat 2298.666 kb on + strandat 2298.666 kb on + strandat 2298.666 kb on + strandat 2298.667 kb on - strandat 2298.667 kb on - strandat 2298.667 kb on - strandat 2298.667 kb on - strandat 2298.695 kb on + strandat 2298.696 kb on - strandat 2298.696 kb on - strandat 2298.696 kb on - strandat 2298.768 kb on + strandat 2298.768 kb on + strandat 2298.768 kb on + strandat 2298.768 kb on + strandat 2298.768 kb on + strandat 2298.768 kb on + strandat 2298.768 kb on + strandat 2298.768 kb on + strandat 2298.768 kb on + strandat 2298.769 kb on - strandat 2298.769 kb on - strandat 2298.769 kb on - strandat 2298.769 kb on - strandat 2298.769 kb on - strandat 2298.769 kb on - strandat 2298.769 kb on - strandat 2298.801 kb on + strandat 2298.841 kb on + strandat 2298.841 kb on + strandat 2298.842 kb on - strandat 2298.941 kb on + strand, within A4249_RS11425at 2298.941 kb on + strand, within A4249_RS11425at 2298.941 kb on + strand, within A4249_RS11425at 2298.941 kb on + strand, within A4249_RS11425at 2298.942 kb on - strand, within A4249_RS11425at 2299.150 kb on + strand, within A4249_RS11425at 2299.499 kb on + strandat 2299.499 kb on + strandat 2299.500 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,297,294 + A4249_RS11415 0.11 -0.3
2,297,513 + A4249_RS11415 0.52 +0.0
2,297,513 + A4249_RS11415 0.52 -0.1
2,297,513 + A4249_RS11415 0.52 -0.2
2,297,513 + A4249_RS11415 0.52 -0.4
2,297,513 + A4249_RS11415 0.52 +0.6
2,297,513 + A4249_RS11415 0.52 +0.7
2,297,514 - A4249_RS11415 0.52 +0.7
2,297,514 - A4249_RS11415 0.52 -0.1
2,297,514 - A4249_RS11415 0.52 -0.6
2,297,514 - A4249_RS11415 0.52 +0.5
2,297,514 - A4249_RS11415 0.52 -0.1
2,297,514 - A4249_RS11415 0.52 -0.8
2,297,514 - A4249_RS11415 0.52 -0.3
2,297,514 - A4249_RS11415 0.52 -0.6
2,297,552 + A4249_RS11415 0.59 -0.2
2,297,552 + A4249_RS11415 0.59 -0.1
2,297,552 + A4249_RS11415 0.59 +1.2
2,297,552 + A4249_RS11415 0.59 +0.1
2,297,553 - A4249_RS11415 0.59 +0.5
2,298,092 + A4249_RS11420 0.35 -1.5
2,298,289 - A4249_RS11420 0.56 -0.6
2,298,666 + -1.5
2,298,666 + +0.2
2,298,666 + -0.0
2,298,666 + -0.8
2,298,666 + +0.6
2,298,666 + +0.5
2,298,667 - +0.1
2,298,667 - +0.0
2,298,667 - -0.2
2,298,667 - -0.3
2,298,695 + -0.0
2,298,696 - +0.2
2,298,696 - +0.2
2,298,696 - +0.2
2,298,768 + -0.0
2,298,768 + +0.6
2,298,768 + +0.2
2,298,768 + +0.1
2,298,768 + +0.8
2,298,768 + -0.5
2,298,768 + -0.2
2,298,768 + -0.2
2,298,768 + +0.4
2,298,769 - -0.2
2,298,769 - +0.3
2,298,769 - -0.5
2,298,769 - -1.2
2,298,769 - +0.9
2,298,769 - +0.1
2,298,769 - -0.8
2,298,801 + -0.2
2,298,841 + +0.0
2,298,841 + -1.9
2,298,842 - -1.9
2,298,941 + A4249_RS11425 0.24 +0.9
2,298,941 + A4249_RS11425 0.24 -0.0
2,298,941 + A4249_RS11425 0.24 +0.5
2,298,941 + A4249_RS11425 0.24 -0.3
2,298,942 - A4249_RS11425 0.24 -0.7
2,299,150 + A4249_RS11425 0.53 -1.5
2,299,499 + +0.1
2,299,499 + +0.3
2,299,500 - -0.1

Or see this region's nucleotide sequence