Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11410

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11400 and A4249_RS11405 are separated by 167 nucleotidesA4249_RS11405 and A4249_RS11410 are separated by 99 nucleotidesA4249_RS11410 and A4249_RS11415 are separated by 160 nucleotidesA4249_RS11415 and A4249_RS11420 overlap by 8 nucleotides A4249_RS11400: A4249_RS11400 - GNAT family N-acetyltransferase, at 2,295,433 to 2,295,966 _RS11400 A4249_RS11405: A4249_RS11405 - 50S ribosomal protein L27, at 2,296,134 to 2,296,421 _RS11405 A4249_RS11410: A4249_RS11410 - 50S ribosomal protein L21, at 2,296,521 to 2,297,075 _RS11410 A4249_RS11415: A4249_RS11415 - phosphoribosyltransferase family protein, at 2,297,236 to 2,297,769 _RS11415 A4249_RS11420: A4249_RS11420 - zinc-ribbon domain-containing protein, at 2,297,762 to 2,298,700 _RS11420 Position (kb) 2296 2297 2298Strain fitness (log2 ratio) -1 0 1at 2295.656 kb on + strand, within A4249_RS11400at 2295.657 kb on - strand, within A4249_RS11400at 2295.657 kb on - strand, within A4249_RS11400at 2295.990 kb on + strandat 2295.990 kb on + strandat 2295.991 kb on - strandat 2295.991 kb on - strandat 2296.070 kb on + strandat 2296.070 kb on + strandat 2296.070 kb on + strandat 2296.071 kb on - strandat 2296.071 kb on - strandat 2296.135 kb on + strandat 2296.136 kb on - strandat 2296.136 kb on - strandat 2296.136 kb on - strandat 2296.523 kb on - strandat 2297.294 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.513 kb on + strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.514 kb on - strand, within A4249_RS11415at 2297.552 kb on + strand, within A4249_RS11415at 2297.552 kb on + strand, within A4249_RS11415at 2297.552 kb on + strand, within A4249_RS11415at 2297.552 kb on + strand, within A4249_RS11415at 2297.553 kb on - strand, within A4249_RS11415

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,295,656 + A4249_RS11400 0.42 -0.2
2,295,657 - A4249_RS11400 0.42 +0.2
2,295,657 - A4249_RS11400 0.42 +1.0
2,295,990 + +0.3
2,295,990 + +0.5
2,295,991 - -0.2
2,295,991 - -0.6
2,296,070 + -0.0
2,296,070 + -0.3
2,296,070 + +0.3
2,296,071 - -0.2
2,296,071 - +0.7
2,296,135 + -1.2
2,296,136 - -0.1
2,296,136 - -0.2
2,296,136 - -0.1
2,296,523 - -0.4
2,297,294 + A4249_RS11415 0.11 -0.3
2,297,513 + A4249_RS11415 0.52 +0.0
2,297,513 + A4249_RS11415 0.52 -0.1
2,297,513 + A4249_RS11415 0.52 -0.2
2,297,513 + A4249_RS11415 0.52 -0.4
2,297,513 + A4249_RS11415 0.52 +0.6
2,297,513 + A4249_RS11415 0.52 +0.7
2,297,514 - A4249_RS11415 0.52 +0.7
2,297,514 - A4249_RS11415 0.52 -0.1
2,297,514 - A4249_RS11415 0.52 -0.6
2,297,514 - A4249_RS11415 0.52 +0.5
2,297,514 - A4249_RS11415 0.52 -0.1
2,297,514 - A4249_RS11415 0.52 -0.8
2,297,514 - A4249_RS11415 0.52 -0.3
2,297,514 - A4249_RS11415 0.52 -0.6
2,297,552 + A4249_RS11415 0.59 -0.2
2,297,552 + A4249_RS11415 0.59 -0.1
2,297,552 + A4249_RS11415 0.59 +1.2
2,297,552 + A4249_RS11415 0.59 +0.1
2,297,553 - A4249_RS11415 0.59 +0.5

Or see this region's nucleotide sequence