Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11225

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11215 and A4249_RS11220 are separated by 56 nucleotidesA4249_RS11220 and A4249_RS11225 are separated by 43 nucleotidesA4249_RS11225 and A4249_RS11230 are separated by 63 nucleotidesA4249_RS11230 and A4249_RS11235 are separated by 54 nucleotidesA4249_RS11235 and A4249_RS11240 are separated by 12 nucleotides A4249_RS11215: A4249_RS11215 - isoaspartyl peptidase/L-asparaginase, at 2,258,908 to 2,259,972 _RS11215 A4249_RS11220: A4249_RS11220 - hypothetical protein, at 2,260,029 to 2,260,295 _RS11220 A4249_RS11225: A4249_RS11225 - fumarylacetoacetate hydrolase family protein, at 2,260,339 to 2,261,358 _RS11225 A4249_RS11230: A4249_RS11230 - DUF1453 family protein, at 2,261,422 to 2,261,958 _RS11230 A4249_RS11235: A4249_RS11235 - tRNA-Leu, at 2,262,013 to 2,262,097 _RS11235 A4249_RS11240: A4249_RS11240 - alpha/beta hydrolase, at 2,262,110 to 2,262,961 _RS11240 Position (kb) 2260 2261 2262Strain fitness (log2 ratio) -2 -1 0 1 2at 2259.682 kb on + strand, within A4249_RS11215at 2259.682 kb on + strand, within A4249_RS11215at 2259.682 kb on + strand, within A4249_RS11215at 2259.683 kb on - strand, within A4249_RS11215at 2259.683 kb on - strand, within A4249_RS11215at 2259.683 kb on - strand, within A4249_RS11215at 2259.683 kb on - strand, within A4249_RS11215at 2259.733 kb on + strand, within A4249_RS11215at 2259.733 kb on + strand, within A4249_RS11215at 2259.734 kb on - strand, within A4249_RS11215at 2259.734 kb on - strand, within A4249_RS11215at 2259.734 kb on - strand, within A4249_RS11215at 2259.910 kb on + strandat 2259.910 kb on + strandat 2259.910 kb on + strandat 2259.910 kb on + strandat 2259.910 kb on + strandat 2259.910 kb on + strandat 2259.910 kb on + strandat 2259.910 kb on + strandat 2259.911 kb on - strandat 2259.911 kb on - strandat 2259.911 kb on - strandat 2259.911 kb on - strandat 2259.911 kb on - strandat 2259.911 kb on - strandat 2259.955 kb on + strandat 2259.955 kb on + strandat 2259.955 kb on + strandat 2259.955 kb on + strandat 2259.956 kb on - strandat 2259.956 kb on - strandat 2259.991 kb on + strandat 2259.991 kb on + strandat 2259.992 kb on - strandat 2260.000 kb on + strandat 2260.000 kb on + strandat 2260.001 kb on - strandat 2260.001 kb on - strandat 2260.001 kb on - strandat 2260.001 kb on - strandat 2260.137 kb on + strand, within A4249_RS11220at 2260.138 kb on - strand, within A4249_RS11220at 2260.138 kb on - strand, within A4249_RS11220at 2260.138 kb on - strand, within A4249_RS11220at 2260.138 kb on - strand, within A4249_RS11220at 2260.138 kb on - strand, within A4249_RS11220at 2260.138 kb on - strand, within A4249_RS11220at 2260.138 kb on - strand, within A4249_RS11220at 2260.138 kb on - strand, within A4249_RS11220at 2260.138 kb on - strand, within A4249_RS11220at 2260.186 kb on - strand, within A4249_RS11220at 2260.186 kb on - strand, within A4249_RS11220at 2260.186 kb on - strand, within A4249_RS11220at 2260.327 kb on + strandat 2260.594 kb on + strand, within A4249_RS11225at 2260.594 kb on + strand, within A4249_RS11225at 2260.594 kb on + strand, within A4249_RS11225at 2260.595 kb on - strand, within A4249_RS11225at 2260.595 kb on - strand, within A4249_RS11225at 2260.595 kb on - strand, within A4249_RS11225at 2260.595 kb on - strand, within A4249_RS11225at 2260.672 kb on + strand, within A4249_RS11225at 2260.673 kb on - strand, within A4249_RS11225at 2260.673 kb on - strand, within A4249_RS11225at 2260.673 kb on - strand, within A4249_RS11225at 2261.365 kb on + strandat 2261.365 kb on + strandat 2261.366 kb on - strandat 2261.896 kb on + strand, within A4249_RS11230at 2261.896 kb on + strand, within A4249_RS11230at 2261.896 kb on + strand, within A4249_RS11230at 2261.896 kb on + strand, within A4249_RS11230at 2261.896 kb on + strand, within A4249_RS11230at 2261.896 kb on + strand, within A4249_RS11230at 2261.896 kb on + strand, within A4249_RS11230at 2261.897 kb on - strand, within A4249_RS11230at 2261.897 kb on - strand, within A4249_RS11230at 2261.897 kb on - strand, within A4249_RS11230at 2261.897 kb on - strand, within A4249_RS11230at 2261.897 kb on - strand, within A4249_RS11230at 2262.220 kb on - strand, within A4249_RS11240

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,259,682 + A4249_RS11215 0.73 -0.7
2,259,682 + A4249_RS11215 0.73 +0.8
2,259,682 + A4249_RS11215 0.73 -1.8
2,259,683 - A4249_RS11215 0.73 +0.1
2,259,683 - A4249_RS11215 0.73 -0.1
2,259,683 - A4249_RS11215 0.73 +0.0
2,259,683 - A4249_RS11215 0.73 +0.7
2,259,733 + A4249_RS11215 0.77 +0.3
2,259,733 + A4249_RS11215 0.77 -0.2
2,259,734 - A4249_RS11215 0.78 +0.7
2,259,734 - A4249_RS11215 0.78 -0.5
2,259,734 - A4249_RS11215 0.78 -0.4
2,259,910 + -1.2
2,259,910 + +0.1
2,259,910 + +0.4
2,259,910 + +0.6
2,259,910 + -0.1
2,259,910 + +0.3
2,259,910 + -0.0
2,259,910 + -0.7
2,259,911 - -1.8
2,259,911 - +1.0
2,259,911 - -0.9
2,259,911 - +1.2
2,259,911 - +0.9
2,259,911 - -0.0
2,259,955 + +1.9
2,259,955 + -0.4
2,259,955 + -0.4
2,259,955 + -0.5
2,259,956 - +1.1
2,259,956 - +0.4
2,259,991 + -0.9
2,259,991 + -0.9
2,259,992 - +0.6
2,260,000 + -0.1
2,260,000 + -0.1
2,260,001 - +1.7
2,260,001 - -0.3
2,260,001 - +0.3
2,260,001 - +0.6
2,260,137 + A4249_RS11220 0.40 +0.2
2,260,138 - A4249_RS11220 0.41 -0.2
2,260,138 - A4249_RS11220 0.41 -0.4
2,260,138 - A4249_RS11220 0.41 -0.4
2,260,138 - A4249_RS11220 0.41 +0.7
2,260,138 - A4249_RS11220 0.41 -0.6
2,260,138 - A4249_RS11220 0.41 -0.1
2,260,138 - A4249_RS11220 0.41 +0.1
2,260,138 - A4249_RS11220 0.41 -1.0
2,260,138 - A4249_RS11220 0.41 +0.5
2,260,186 - A4249_RS11220 0.59 -0.3
2,260,186 - A4249_RS11220 0.59 -0.1
2,260,186 - A4249_RS11220 0.59 -0.0
2,260,327 + +0.3
2,260,594 + A4249_RS11225 0.25 -0.4
2,260,594 + A4249_RS11225 0.25 -0.3
2,260,594 + A4249_RS11225 0.25 +0.9
2,260,595 - A4249_RS11225 0.25 -0.4
2,260,595 - A4249_RS11225 0.25 -0.9
2,260,595 - A4249_RS11225 0.25 +0.6
2,260,595 - A4249_RS11225 0.25 +0.6
2,260,672 + A4249_RS11225 0.33 -1.2
2,260,673 - A4249_RS11225 0.33 -0.7
2,260,673 - A4249_RS11225 0.33 +0.3
2,260,673 - A4249_RS11225 0.33 -1.3
2,261,365 + +0.0
2,261,365 + -0.3
2,261,366 - -0.3
2,261,896 + A4249_RS11230 0.88 +0.1
2,261,896 + A4249_RS11230 0.88 +0.1
2,261,896 + A4249_RS11230 0.88 +0.0
2,261,896 + A4249_RS11230 0.88 -0.4
2,261,896 + A4249_RS11230 0.88 -0.1
2,261,896 + A4249_RS11230 0.88 +0.3
2,261,896 + A4249_RS11230 0.88 +0.3
2,261,897 - A4249_RS11230 0.88 +0.3
2,261,897 - A4249_RS11230 0.88 -2.2
2,261,897 - A4249_RS11230 0.88 -0.4
2,261,897 - A4249_RS11230 0.88 +0.0
2,261,897 - A4249_RS11230 0.88 -0.2
2,262,220 - A4249_RS11240 0.13 -1.7

Or see this region's nucleotide sequence