Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11010

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11005 and A4249_RS11010 are separated by 755 nucleotidesA4249_RS11010 and A4249_RS11015 are separated by 120 nucleotides A4249_RS11005: A4249_RS11005 - DUF488 domain-containing protein, at 2,209,616 to 2,210,245 _RS11005 A4249_RS11010: A4249_RS11010 - ATP-dependent chaperone ClpB, at 2,211,001 to 2,213,589 _RS11010 A4249_RS11015: A4249_RS11015 - TonB-dependent receptor, at 2,213,710 to 2,216,001 _RS11015 Position (kb) 2211 2212 2213 2214Strain fitness (log2 ratio) -2 -1 0 1 2at 2210.252 kb on + strandat 2210.253 kb on - strandat 2210.412 kb on + strandat 2210.412 kb on + strandat 2210.413 kb on - strandat 2210.413 kb on - strandat 2210.413 kb on - strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.426 kb on + strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.427 kb on - strandat 2210.434 kb on + strandat 2210.434 kb on + strandat 2210.434 kb on + strandat 2210.435 kb on - strandat 2210.446 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.451 kb on + strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.452 kb on - strandat 2210.463 kb on + strandat 2210.464 kb on - strandat 2210.481 kb on - strandat 2210.492 kb on + strandat 2210.554 kb on + strandat 2210.554 kb on + strandat 2210.555 kb on - strandat 2210.555 kb on - strandat 2210.555 kb on - strandat 2210.561 kb on + strandat 2210.561 kb on + strandat 2210.561 kb on + strandat 2210.561 kb on + strandat 2210.561 kb on + strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.562 kb on - strandat 2210.594 kb on + strandat 2210.594 kb on + strandat 2210.595 kb on - strandat 2210.595 kb on - strandat 2210.679 kb on + strandat 2210.679 kb on + strandat 2210.693 kb on - strandat 2210.724 kb on + strandat 2210.725 kb on - strandat 2210.795 kb on + strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.796 kb on - strandat 2210.836 kb on - strandat 2210.844 kb on + strandat 2210.844 kb on + strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.845 kb on - strandat 2210.899 kb on - strandat 2210.908 kb on - strandat 2210.908 kb on - strandat 2210.914 kb on + strandat 2210.914 kb on + strandat 2210.915 kb on - strandat 2210.922 kb on - strandat 2210.922 kb on - strandat 2210.973 kb on + strandat 2210.980 kb on + strandat 2211.002 kb on + strandat 2211.003 kb on - strandat 2211.153 kb on - strandat 2211.164 kb on + strandat 2211.416 kb on + strand, within A4249_RS11010at 2211.416 kb on + strand, within A4249_RS11010at 2211.416 kb on + strand, within A4249_RS11010at 2211.416 kb on + strand, within A4249_RS11010at 2211.417 kb on - strand, within A4249_RS11010at 2211.417 kb on - strand, within A4249_RS11010at 2211.417 kb on - strand, within A4249_RS11010at 2211.417 kb on - strand, within A4249_RS11010at 2211.575 kb on + strand, within A4249_RS11010at 2211.621 kb on - strand, within A4249_RS11010at 2211.621 kb on - strand, within A4249_RS11010at 2211.621 kb on - strand, within A4249_RS11010at 2211.621 kb on - strand, within A4249_RS11010at 2211.629 kb on + strand, within A4249_RS11010at 2211.629 kb on + strand, within A4249_RS11010at 2211.629 kb on + strand, within A4249_RS11010at 2211.630 kb on - strand, within A4249_RS11010at 2211.630 kb on - strand, within A4249_RS11010at 2211.675 kb on + strand, within A4249_RS11010at 2211.675 kb on + strand, within A4249_RS11010at 2211.675 kb on + strand, within A4249_RS11010at 2211.675 kb on + strand, within A4249_RS11010at 2211.676 kb on - strand, within A4249_RS11010at 2211.676 kb on - strand, within A4249_RS11010at 2211.676 kb on - strand, within A4249_RS11010at 2211.677 kb on + strand, within A4249_RS11010at 2211.677 kb on + strand, within A4249_RS11010at 2211.677 kb on + strand, within A4249_RS11010at 2211.677 kb on + strand, within A4249_RS11010at 2211.677 kb on + strand, within A4249_RS11010at 2211.677 kb on + strand, within A4249_RS11010at 2211.677 kb on + strand, within A4249_RS11010at 2211.677 kb on + strand, within A4249_RS11010at 2211.677 kb on + strand, within A4249_RS11010at 2211.678 kb on - strand, within A4249_RS11010at 2211.678 kb on - strand, within A4249_RS11010at 2211.678 kb on - strand, within A4249_RS11010at 2211.678 kb on - strand, within A4249_RS11010at 2211.678 kb on - strand, within A4249_RS11010at 2211.687 kb on + strand, within A4249_RS11010at 2211.687 kb on + strand, within A4249_RS11010at 2211.687 kb on + strand, within A4249_RS11010at 2211.687 kb on + strand, within A4249_RS11010at 2211.687 kb on + strand, within A4249_RS11010at 2211.688 kb on - strand, within A4249_RS11010at 2211.688 kb on - strand, within A4249_RS11010at 2211.688 kb on - strand, within A4249_RS11010at 2212.083 kb on - strand, within A4249_RS11010at 2212.451 kb on + strand, within A4249_RS11010at 2212.451 kb on + strand, within A4249_RS11010at 2212.451 kb on + strand, within A4249_RS11010at 2212.451 kb on + strand, within A4249_RS11010at 2212.451 kb on + strand, within A4249_RS11010at 2212.451 kb on + strand, within A4249_RS11010at 2212.452 kb on - strand, within A4249_RS11010at 2212.520 kb on + strand, within A4249_RS11010at 2212.520 kb on + strand, within A4249_RS11010at 2212.520 kb on + strand, within A4249_RS11010at 2212.520 kb on + strand, within A4249_RS11010at 2212.520 kb on + strand, within A4249_RS11010at 2212.520 kb on + strand, within A4249_RS11010at 2212.520 kb on + strand, within A4249_RS11010at 2212.521 kb on - strand, within A4249_RS11010at 2212.521 kb on - strand, within A4249_RS11010at 2212.521 kb on - strand, within A4249_RS11010at 2212.635 kb on - strand, within A4249_RS11010at 2212.791 kb on + strand, within A4249_RS11010at 2212.792 kb on - strand, within A4249_RS11010at 2212.838 kb on + strand, within A4249_RS11010at 2212.838 kb on + strand, within A4249_RS11010at 2212.838 kb on + strand, within A4249_RS11010at 2212.838 kb on + strand, within A4249_RS11010at 2213.211 kb on + strand, within A4249_RS11010at 2213.211 kb on + strand, within A4249_RS11010at 2213.212 kb on - strand, within A4249_RS11010at 2213.345 kb on + strandat 2213.345 kb on + strandat 2213.345 kb on + strandat 2213.346 kb on - strandat 2213.346 kb on - strandat 2213.573 kb on + strandat 2213.573 kb on + strandat 2213.574 kb on - strandat 2213.589 kb on + strandat 2213.590 kb on - strandat 2213.590 kb on - strandat 2213.590 kb on - strandat 2213.590 kb on - strandat 2213.792 kb on + strandat 2213.792 kb on + strandat 2213.792 kb on + strandat 2213.792 kb on + strandat 2213.792 kb on + strandat 2213.792 kb on + strandat 2213.793 kb on - strandat 2213.793 kb on - strandat 2213.793 kb on - strandat 2213.793 kb on - strandat 2213.793 kb on - strandat 2213.793 kb on - strandat 2213.793 kb on - strandat 2213.849 kb on + strandat 2213.849 kb on + strandat 2213.849 kb on + strandat 2213.849 kb on + strandat 2213.849 kb on + strandat 2213.849 kb on + strandat 2213.849 kb on + strandat 2213.850 kb on - strandat 2213.850 kb on - strandat 2213.850 kb on - strandat 2213.850 kb on - strandat 2213.850 kb on - strandat 2213.850 kb on - strandat 2213.930 kb on + strandat 2214.140 kb on + strand, within A4249_RS11015at 2214.287 kb on + strand, within A4249_RS11015at 2214.287 kb on + strand, within A4249_RS11015at 2214.287 kb on + strand, within A4249_RS11015at 2214.287 kb on + strand, within A4249_RS11015at 2214.288 kb on - strand, within A4249_RS11015at 2214.288 kb on - strand, within A4249_RS11015at 2214.302 kb on + strand, within A4249_RS11015at 2214.302 kb on + strand, within A4249_RS11015at 2214.302 kb on + strand, within A4249_RS11015at 2214.302 kb on + strand, within A4249_RS11015at 2214.302 kb on + strand, within A4249_RS11015at 2214.302 kb on + strand, within A4249_RS11015at 2214.302 kb on + strand, within A4249_RS11015at 2214.303 kb on - strand, within A4249_RS11015at 2214.303 kb on - strand, within A4249_RS11015at 2214.303 kb on - strand, within A4249_RS11015at 2214.303 kb on - strand, within A4249_RS11015at 2214.303 kb on - strand, within A4249_RS11015at 2214.404 kb on + strand, within A4249_RS11015at 2214.458 kb on + strand, within A4249_RS11015at 2214.458 kb on + strand, within A4249_RS11015at 2214.459 kb on - strand, within A4249_RS11015at 2214.459 kb on - strand, within A4249_RS11015at 2214.494 kb on + strand, within A4249_RS11015at 2214.495 kb on - strand, within A4249_RS11015at 2214.528 kb on - strand, within A4249_RS11015at 2214.528 kb on - strand, within A4249_RS11015

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,210,252 + +0.0
2,210,253 - +0.7
2,210,412 + -0.1
2,210,412 + -1.3
2,210,413 - +0.3
2,210,413 - +0.7
2,210,413 - -0.8
2,210,426 + +0.6
2,210,426 + -0.6
2,210,426 + -0.3
2,210,426 + +0.1
2,210,426 + -1.9
2,210,426 + +0.6
2,210,426 + +0.3
2,210,426 + -0.6
2,210,427 - +0.4
2,210,427 - -1.0
2,210,427 - -0.4
2,210,427 - -1.2
2,210,427 - -0.2
2,210,427 - +1.0
2,210,427 - +0.4
2,210,427 - -1.2
2,210,427 - -0.3
2,210,427 - +1.0
2,210,427 - -0.8
2,210,427 - -0.6
2,210,427 - -0.3
2,210,427 - +0.3
2,210,427 - -0.7
2,210,427 - -1.1
2,210,427 - +0.1
2,210,434 + -0.9
2,210,434 + +0.2
2,210,434 + -0.7
2,210,435 - +0.2
2,210,446 + -0.5
2,210,451 + -0.1
2,210,451 + +1.3
2,210,451 + -1.3
2,210,451 + -0.2
2,210,451 + -0.6
2,210,451 + +0.0
2,210,452 - +0.6
2,210,452 - -0.6
2,210,452 - -0.5
2,210,452 - -0.2
2,210,452 - -0.4
2,210,452 - +0.3
2,210,452 - -0.8
2,210,463 + -0.4
2,210,464 - +0.6
2,210,481 - +0.1
2,210,492 + -0.8
2,210,554 + -0.3
2,210,554 + -0.3
2,210,555 - +1.5
2,210,555 - -1.3
2,210,555 - +0.8
2,210,561 + -0.1
2,210,561 + -0.7
2,210,561 + -0.5
2,210,561 + +0.6
2,210,561 + +0.1
2,210,562 - -0.2
2,210,562 - +0.8
2,210,562 - -0.2
2,210,562 - -0.6
2,210,562 - -0.1
2,210,562 - +0.8
2,210,562 - -0.5
2,210,562 - -0.1
2,210,562 - -0.3
2,210,594 + +0.7
2,210,594 + +0.4
2,210,595 - -1.4
2,210,595 - -1.1
2,210,679 + -0.2
2,210,679 + -0.2
2,210,693 - -0.2
2,210,724 + -1.5
2,210,725 - -1.8
2,210,795 + -0.1
2,210,796 - -0.4
2,210,796 - -0.4
2,210,796 - +0.2
2,210,796 - +0.6
2,210,796 - -0.1
2,210,796 - -0.9
2,210,836 - -0.6
2,210,844 + -0.8
2,210,844 + -0.2
2,210,845 - +0.5
2,210,845 - -0.1
2,210,845 - -0.1
2,210,845 - +0.0
2,210,845 - -0.1
2,210,845 - -0.3
2,210,899 - +0.1
2,210,908 - -0.4
2,210,908 - -0.3
2,210,914 + -0.6
2,210,914 + +0.2
2,210,915 - -0.2
2,210,922 - +0.8
2,210,922 - -0.9
2,210,973 + -0.5
2,210,980 + +0.4
2,211,002 + +0.3
2,211,003 - +0.6
2,211,153 - -0.1
2,211,164 + -0.2
2,211,416 + A4249_RS11010 0.16 -1.8
2,211,416 + A4249_RS11010 0.16 -0.3
2,211,416 + A4249_RS11010 0.16 +0.3
2,211,416 + A4249_RS11010 0.16 -1.4
2,211,417 - A4249_RS11010 0.16 +0.4
2,211,417 - A4249_RS11010 0.16 +0.5
2,211,417 - A4249_RS11010 0.16 +0.5
2,211,417 - A4249_RS11010 0.16 +0.0
2,211,575 + A4249_RS11010 0.22 -0.3
2,211,621 - A4249_RS11010 0.24 +0.1
2,211,621 - A4249_RS11010 0.24 -0.0
2,211,621 - A4249_RS11010 0.24 +1.5
2,211,621 - A4249_RS11010 0.24 -0.8
2,211,629 + A4249_RS11010 0.24 -0.3
2,211,629 + A4249_RS11010 0.24 -0.1
2,211,629 + A4249_RS11010 0.24 -0.3
2,211,630 - A4249_RS11010 0.24 +0.7
2,211,630 - A4249_RS11010 0.24 +0.5
2,211,675 + A4249_RS11010 0.26 -0.4
2,211,675 + A4249_RS11010 0.26 -0.2
2,211,675 + A4249_RS11010 0.26 -0.8
2,211,675 + A4249_RS11010 0.26 +0.6
2,211,676 - A4249_RS11010 0.26 +0.1
2,211,676 - A4249_RS11010 0.26 -0.6
2,211,676 - A4249_RS11010 0.26 +0.9
2,211,677 + A4249_RS11010 0.26 -0.3
2,211,677 + A4249_RS11010 0.26 -0.8
2,211,677 + A4249_RS11010 0.26 -0.1
2,211,677 + A4249_RS11010 0.26 +0.1
2,211,677 + A4249_RS11010 0.26 -0.2
2,211,677 + A4249_RS11010 0.26 +0.1
2,211,677 + A4249_RS11010 0.26 -0.1
2,211,677 + A4249_RS11010 0.26 -0.2
2,211,677 + A4249_RS11010 0.26 -0.5
2,211,678 - A4249_RS11010 0.26 -0.5
2,211,678 - A4249_RS11010 0.26 -0.6
2,211,678 - A4249_RS11010 0.26 -1.6
2,211,678 - A4249_RS11010 0.26 +0.2
2,211,678 - A4249_RS11010 0.26 -0.4
2,211,687 + A4249_RS11010 0.26 -0.0
2,211,687 + A4249_RS11010 0.26 +0.0
2,211,687 + A4249_RS11010 0.26 +1.2
2,211,687 + A4249_RS11010 0.26 -0.1
2,211,687 + A4249_RS11010 0.26 -0.1
2,211,688 - A4249_RS11010 0.27 -0.0
2,211,688 - A4249_RS11010 0.27 -0.3
2,211,688 - A4249_RS11010 0.27 -0.1
2,212,083 - A4249_RS11010 0.42 +0.3
2,212,451 + A4249_RS11010 0.56 +0.2
2,212,451 + A4249_RS11010 0.56 -1.7
2,212,451 + A4249_RS11010 0.56 -0.5
2,212,451 + A4249_RS11010 0.56 +0.5
2,212,451 + A4249_RS11010 0.56 +1.8
2,212,451 + A4249_RS11010 0.56 -0.0
2,212,452 - A4249_RS11010 0.56 +0.2
2,212,520 + A4249_RS11010 0.59 +0.3
2,212,520 + A4249_RS11010 0.59 -0.2
2,212,520 + A4249_RS11010 0.59 -0.5
2,212,520 + A4249_RS11010 0.59 -0.7
2,212,520 + A4249_RS11010 0.59 +0.1
2,212,520 + A4249_RS11010 0.59 -0.0
2,212,520 + A4249_RS11010 0.59 -0.8
2,212,521 - A4249_RS11010 0.59 +0.1
2,212,521 - A4249_RS11010 0.59 -0.6
2,212,521 - A4249_RS11010 0.59 +0.4
2,212,635 - A4249_RS11010 0.63 -0.4
2,212,791 + A4249_RS11010 0.69 -0.0
2,212,792 - A4249_RS11010 0.69 +0.6
2,212,838 + A4249_RS11010 0.71 +0.6
2,212,838 + A4249_RS11010 0.71 -0.1
2,212,838 + A4249_RS11010 0.71 +0.2
2,212,838 + A4249_RS11010 0.71 -0.2
2,213,211 + A4249_RS11010 0.85 +0.6
2,213,211 + A4249_RS11010 0.85 -1.3
2,213,212 - A4249_RS11010 0.85 -1.4
2,213,345 + +0.3
2,213,345 + +0.9
2,213,345 + +1.5
2,213,346 - -1.0
2,213,346 - +0.5
2,213,573 + +0.1
2,213,573 + -1.3
2,213,574 - -0.4
2,213,589 + -0.7
2,213,590 - -0.5
2,213,590 - -0.2
2,213,590 - +1.2
2,213,590 - -0.5
2,213,792 + -0.4
2,213,792 + +0.1
2,213,792 + +1.4
2,213,792 + +0.1
2,213,792 + -0.3
2,213,792 + +1.6
2,213,793 - +0.6
2,213,793 - -0.6
2,213,793 - +0.0
2,213,793 - +0.4
2,213,793 - -0.1
2,213,793 - +0.7
2,213,793 - -0.3
2,213,849 + +0.5
2,213,849 + -0.6
2,213,849 + -0.0
2,213,849 + -0.3
2,213,849 + -0.4
2,213,849 + -0.6
2,213,849 + -0.2
2,213,850 - +0.1
2,213,850 - -0.4
2,213,850 - -0.3
2,213,850 - -0.2
2,213,850 - -0.1
2,213,850 - +0.7
2,213,930 + -1.0
2,214,140 + A4249_RS11015 0.19 +0.2
2,214,287 + A4249_RS11015 0.25 +0.0
2,214,287 + A4249_RS11015 0.25 -0.0
2,214,287 + A4249_RS11015 0.25 +0.0
2,214,287 + A4249_RS11015 0.25 -0.7
2,214,288 - A4249_RS11015 0.25 +0.0
2,214,288 - A4249_RS11015 0.25 +0.1
2,214,302 + A4249_RS11015 0.26 -0.2
2,214,302 + A4249_RS11015 0.26 -0.2
2,214,302 + A4249_RS11015 0.26 -0.1
2,214,302 + A4249_RS11015 0.26 +0.6
2,214,302 + A4249_RS11015 0.26 +0.4
2,214,302 + A4249_RS11015 0.26 -1.3
2,214,302 + A4249_RS11015 0.26 +0.7
2,214,303 - A4249_RS11015 0.26 -0.8
2,214,303 - A4249_RS11015 0.26 +0.1
2,214,303 - A4249_RS11015 0.26 +0.3
2,214,303 - A4249_RS11015 0.26 -0.8
2,214,303 - A4249_RS11015 0.26 -1.5
2,214,404 + A4249_RS11015 0.30 -0.0
2,214,458 + A4249_RS11015 0.33 +0.6
2,214,458 + A4249_RS11015 0.33 -1.1
2,214,459 - A4249_RS11015 0.33 -0.6
2,214,459 - A4249_RS11015 0.33 -0.3
2,214,494 + A4249_RS11015 0.34 -0.2
2,214,495 - A4249_RS11015 0.34 -0.8
2,214,528 - A4249_RS11015 0.36 +0.2
2,214,528 - A4249_RS11015 0.36 -0.3

Or see this region's nucleotide sequence