Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS10875 and A4249_RS10880 are separated by 70 nucleotides A4249_RS10880 and A4249_RS10885 are separated by 281 nucleotides
A4249_RS10875: A4249_RS10875 - TonB-dependent receptor, at 2,185,320 to 2,187,389
_RS10875
A4249_RS10880: A4249_RS10880 - oligopeptide:H+ symporter, at 2,187,460 to 2,189,394
_RS10880
A4249_RS10885: A4249_RS10885 - hypothetical protein, at 2,189,676 to 2,190,827
_RS10885
Position (kb)
2187
2188
2189
2190 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2186.794 kb on - strand, within A4249_RS10875 at 2187.159 kb on + strand, within A4249_RS10875 at 2187.159 kb on + strand, within A4249_RS10875 at 2187.159 kb on + strand, within A4249_RS10875 at 2187.160 kb on - strand, within A4249_RS10875 at 2187.198 kb on + strand at 2187.199 kb on - strand at 2187.199 kb on - strand at 2187.199 kb on - strand at 2187.199 kb on - strand at 2187.219 kb on + strand at 2187.219 kb on + strand at 2187.219 kb on + strand at 2187.219 kb on + strand at 2187.219 kb on + strand at 2187.219 kb on + strand at 2187.219 kb on + strand at 2187.219 kb on + strand at 2187.220 kb on - strand at 2187.220 kb on - strand at 2187.220 kb on - strand at 2187.220 kb on - strand at 2187.220 kb on - strand at 2187.294 kb on + strand at 2187.294 kb on + strand at 2187.295 kb on - strand at 2187.737 kb on + strand, within A4249_RS10880 at 2187.737 kb on + strand, within A4249_RS10880 at 2187.737 kb on + strand, within A4249_RS10880 at 2187.737 kb on + strand, within A4249_RS10880 at 2187.737 kb on + strand, within A4249_RS10880 at 2187.738 kb on - strand, within A4249_RS10880 at 2187.738 kb on - strand, within A4249_RS10880 at 2187.738 kb on - strand, within A4249_RS10880 at 2187.738 kb on - strand, within A4249_RS10880 at 2187.738 kb on - strand, within A4249_RS10880 at 2187.866 kb on + strand, within A4249_RS10880 at 2187.867 kb on - strand, within A4249_RS10880 at 2187.867 kb on - strand, within A4249_RS10880 at 2187.867 kb on - strand, within A4249_RS10880 at 2187.867 kb on - strand, within A4249_RS10880 at 2187.867 kb on - strand, within A4249_RS10880 at 2187.867 kb on - strand, within A4249_RS10880 at 2188.213 kb on - strand, within A4249_RS10880 at 2188.349 kb on + strand, within A4249_RS10880 at 2188.350 kb on - strand, within A4249_RS10880 at 2188.460 kb on + strand, within A4249_RS10880 at 2188.460 kb on + strand, within A4249_RS10880 at 2188.460 kb on + strand, within A4249_RS10880 at 2188.461 kb on - strand, within A4249_RS10880 at 2188.461 kb on - strand, within A4249_RS10880 at 2188.461 kb on - strand, within A4249_RS10880 at 2188.558 kb on + strand, within A4249_RS10880 at 2188.558 kb on + strand, within A4249_RS10880 at 2188.558 kb on + strand, within A4249_RS10880 at 2188.559 kb on - strand, within A4249_RS10880 at 2188.559 kb on - strand, within A4249_RS10880 at 2188.559 kb on - strand, within A4249_RS10880 at 2188.682 kb on + strand, within A4249_RS10880 at 2188.682 kb on + strand, within A4249_RS10880 at 2188.682 kb on + strand, within A4249_RS10880 at 2188.682 kb on + strand, within A4249_RS10880 at 2188.682 kb on + strand, within A4249_RS10880 at 2188.683 kb on - strand, within A4249_RS10880 at 2188.683 kb on - strand, within A4249_RS10880 at 2188.685 kb on + strand, within A4249_RS10880 at 2188.685 kb on + strand, within A4249_RS10880 at 2188.685 kb on + strand, within A4249_RS10880 at 2188.685 kb on + strand, within A4249_RS10880 at 2188.686 kb on - strand, within A4249_RS10880 at 2188.686 kb on - strand, within A4249_RS10880 at 2188.686 kb on - strand, within A4249_RS10880 at 2188.686 kb on - strand, within A4249_RS10880 at 2188.686 kb on - strand, within A4249_RS10880 at 2188.689 kb on - strand, within A4249_RS10880 at 2188.689 kb on - strand, within A4249_RS10880 at 2188.689 kb on - strand, within A4249_RS10880 at 2188.730 kb on + strand, within A4249_RS10880 at 2188.730 kb on + strand, within A4249_RS10880 at 2188.805 kb on + strand, within A4249_RS10880 at 2188.806 kb on - strand, within A4249_RS10880 at 2188.806 kb on - strand, within A4249_RS10880 at 2188.806 kb on - strand, within A4249_RS10880 at 2188.806 kb on - strand, within A4249_RS10880 at 2188.806 kb on - strand, within A4249_RS10880 at 2188.827 kb on + strand, within A4249_RS10880 at 2188.850 kb on + strand, within A4249_RS10880 at 2188.850 kb on + strand, within A4249_RS10880 at 2188.850 kb on + strand, within A4249_RS10880 at 2188.851 kb on - strand, within A4249_RS10880 at 2188.851 kb on - strand, within A4249_RS10880 at 2188.851 kb on - strand, within A4249_RS10880 at 2188.851 kb on - strand, within A4249_RS10880 at 2188.851 kb on - strand, within A4249_RS10880 at 2188.851 kb on - strand, within A4249_RS10880 at 2188.937 kb on + strand, within A4249_RS10880 at 2188.937 kb on + strand, within A4249_RS10880 at 2188.937 kb on + strand, within A4249_RS10880 at 2188.937 kb on + strand, within A4249_RS10880 at 2188.937 kb on + strand, within A4249_RS10880 at 2188.937 kb on + strand, within A4249_RS10880 at 2188.937 kb on + strand, within A4249_RS10880 at 2188.938 kb on - strand, within A4249_RS10880 at 2189.003 kb on + strand, within A4249_RS10880 at 2189.004 kb on - strand, within A4249_RS10880 at 2189.004 kb on - strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.018 kb on + strand, within A4249_RS10880 at 2189.019 kb on - strand, within A4249_RS10880 at 2189.019 kb on - strand, within A4249_RS10880 at 2189.019 kb on - strand, within A4249_RS10880 at 2189.019 kb on - strand, within A4249_RS10880 at 2189.019 kb on - strand, within A4249_RS10880 at 2189.019 kb on - strand, within A4249_RS10880 at 2189.019 kb on - strand, within A4249_RS10880 at 2189.019 kb on - strand, within A4249_RS10880 at 2189.159 kb on + strand, within A4249_RS10880 at 2189.160 kb on - strand, within A4249_RS10880 at 2189.160 kb on - strand, within A4249_RS10880 at 2189.174 kb on + strand, within A4249_RS10880 at 2189.174 kb on + strand, within A4249_RS10880 at 2189.174 kb on + strand, within A4249_RS10880 at 2189.175 kb on - strand, within A4249_RS10880 at 2189.175 kb on - strand, within A4249_RS10880 at 2189.175 kb on - strand, within A4249_RS10880 at 2189.184 kb on - strand, within A4249_RS10880 at 2189.184 kb on - strand, within A4249_RS10880 at 2189.259 kb on - strand at 2189.259 kb on - strand at 2189.259 kb on - strand at 2189.261 kb on + strand at 2189.261 kb on + strand at 2189.262 kb on - strand at 2189.262 kb on - strand at 2189.262 kb on - strand at 2189.262 kb on - strand at 2189.429 kb on + strand at 2189.429 kb on + strand at 2189.429 kb on + strand at 2189.430 kb on - strand at 2189.430 kb on - strand at 2189.430 kb on - strand at 2189.430 kb on - strand at 2189.430 kb on - strand at 2189.542 kb on + strand at 2189.542 kb on + strand at 2189.542 kb on + strand at 2189.542 kb on + strand at 2189.543 kb on - strand at 2189.543 kb on - strand at 2189.543 kb on - strand at 2189.543 kb on - strand at 2189.543 kb on - strand at 2189.615 kb on + strand at 2189.615 kb on + strand at 2189.615 kb on + strand at 2189.615 kb on + strand at 2189.616 kb on - strand at 2189.616 kb on - strand at 2189.616 kb on - strand at 2189.616 kb on - strand at 2189.616 kb on - strand at 2189.616 kb on - strand at 2189.616 kb on - strand at 2189.617 kb on + strand at 2189.617 kb on + strand at 2189.618 kb on - strand at 2189.618 kb on - strand at 2189.618 kb on - strand at 2189.618 kb on - strand at 2189.618 kb on - strand at 2189.618 kb on - strand at 2189.618 kb on - strand at 2189.618 kb on - strand at 2189.618 kb on - strand at 2189.618 kb on - strand at 2189.625 kb on + strand at 2189.657 kb on + strand at 2189.658 kb on - strand at 2189.887 kb on - strand, within A4249_RS10885 at 2190.006 kb on + strand, within A4249_RS10885 at 2190.006 kb on + strand, within A4249_RS10885 at 2190.007 kb on - strand, within A4249_RS10885 at 2190.042 kb on + strand, within A4249_RS10885 at 2190.042 kb on + strand, within A4249_RS10885 at 2190.042 kb on + strand, within A4249_RS10885 at 2190.043 kb on - strand, within A4249_RS10885 at 2190.043 kb on - strand, within A4249_RS10885 at 2190.043 kb on - strand, within A4249_RS10885 at 2190.283 kb on - strand, within A4249_RS10885 at 2190.283 kb on - strand, within A4249_RS10885
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 2,186,794 - A4249_RS10875 0.71 -0.5 2,187,159 + A4249_RS10875 0.89 -0.0 2,187,159 + A4249_RS10875 0.89 -0.5 2,187,159 + A4249_RS10875 0.89 -0.9 2,187,160 - A4249_RS10875 0.89 +0.2 2,187,198 + +1.0 2,187,199 - -0.6 2,187,199 - +0.2 2,187,199 - +0.0 2,187,199 - +0.2 2,187,219 + +0.1 2,187,219 + +0.1 2,187,219 + -0.5 2,187,219 + -0.3 2,187,219 + -0.3 2,187,219 + -0.1 2,187,219 + -1.6 2,187,219 + +0.0 2,187,220 - -0.1 2,187,220 - +0.1 2,187,220 - -0.2 2,187,220 - -0.2 2,187,220 - -0.3 2,187,294 + +1.6 2,187,294 + +0.3 2,187,295 - -1.6 2,187,737 + A4249_RS10880 0.14 -0.8 2,187,737 + A4249_RS10880 0.14 +1.0 2,187,737 + A4249_RS10880 0.14 -0.7 2,187,737 + A4249_RS10880 0.14 +0.3 2,187,737 + A4249_RS10880 0.14 +1.1 2,187,738 - A4249_RS10880 0.14 -0.9 2,187,738 - A4249_RS10880 0.14 +0.4 2,187,738 - A4249_RS10880 0.14 -0.7 2,187,738 - A4249_RS10880 0.14 -0.4 2,187,738 - A4249_RS10880 0.14 +0.3 2,187,866 + A4249_RS10880 0.21 +0.0 2,187,867 - A4249_RS10880 0.21 +0.7 2,187,867 - A4249_RS10880 0.21 -0.9 2,187,867 - A4249_RS10880 0.21 +0.0 2,187,867 - A4249_RS10880 0.21 +0.2 2,187,867 - A4249_RS10880 0.21 -1.6 2,187,867 - A4249_RS10880 0.21 +0.7 2,188,213 - A4249_RS10880 0.39 +0.5 2,188,349 + A4249_RS10880 0.46 -0.5 2,188,350 - A4249_RS10880 0.46 -0.8 2,188,460 + A4249_RS10880 0.52 -1.0 2,188,460 + A4249_RS10880 0.52 -0.9 2,188,460 + A4249_RS10880 0.52 -0.7 2,188,461 - A4249_RS10880 0.52 -0.2 2,188,461 - A4249_RS10880 0.52 -0.5 2,188,461 - A4249_RS10880 0.52 +0.1 2,188,558 + A4249_RS10880 0.57 -1.6 2,188,558 + A4249_RS10880 0.57 +0.1 2,188,558 + A4249_RS10880 0.57 +0.0 2,188,559 - A4249_RS10880 0.57 +0.3 2,188,559 - A4249_RS10880 0.57 +0.4 2,188,559 - A4249_RS10880 0.57 +0.1 2,188,682 + A4249_RS10880 0.63 -2.6 2,188,682 + A4249_RS10880 0.63 +0.1 2,188,682 + A4249_RS10880 0.63 -0.5 2,188,682 + A4249_RS10880 0.63 -0.2 2,188,682 + A4249_RS10880 0.63 -0.5 2,188,683 - A4249_RS10880 0.63 -2.6 2,188,683 - A4249_RS10880 0.63 -0.4 2,188,685 + A4249_RS10880 0.63 -0.1 2,188,685 + A4249_RS10880 0.63 -1.9 2,188,685 + A4249_RS10880 0.63 +0.8 2,188,685 + A4249_RS10880 0.63 +0.2 2,188,686 - A4249_RS10880 0.63 +1.1 2,188,686 - A4249_RS10880 0.63 +0.5 2,188,686 - A4249_RS10880 0.63 +0.8 2,188,686 - A4249_RS10880 0.63 -0.7 2,188,686 - A4249_RS10880 0.63 -0.1 2,188,689 - A4249_RS10880 0.64 -0.7 2,188,689 - A4249_RS10880 0.64 +0.7 2,188,689 - A4249_RS10880 0.64 -1.0 2,188,730 + A4249_RS10880 0.66 -1.2 2,188,730 + A4249_RS10880 0.66 -0.9 2,188,805 + A4249_RS10880 0.70 -0.3 2,188,806 - A4249_RS10880 0.70 +0.5 2,188,806 - A4249_RS10880 0.70 -0.0 2,188,806 - A4249_RS10880 0.70 +0.8 2,188,806 - A4249_RS10880 0.70 +1.0 2,188,806 - A4249_RS10880 0.70 -0.5 2,188,827 + A4249_RS10880 0.71 -1.0 2,188,850 + A4249_RS10880 0.72 -0.3 2,188,850 + A4249_RS10880 0.72 +0.0 2,188,850 + A4249_RS10880 0.72 -0.1 2,188,851 - A4249_RS10880 0.72 +1.9 2,188,851 - A4249_RS10880 0.72 -0.5 2,188,851 - A4249_RS10880 0.72 -0.3 2,188,851 - A4249_RS10880 0.72 +0.3 2,188,851 - A4249_RS10880 0.72 +0.5 2,188,851 - A4249_RS10880 0.72 +0.4 2,188,937 + A4249_RS10880 0.76 +1.1 2,188,937 + A4249_RS10880 0.76 +0.4 2,188,937 + A4249_RS10880 0.76 -0.7 2,188,937 + A4249_RS10880 0.76 +0.4 2,188,937 + A4249_RS10880 0.76 +0.7 2,188,937 + A4249_RS10880 0.76 -0.5 2,188,937 + A4249_RS10880 0.76 -0.6 2,188,938 - A4249_RS10880 0.76 -0.6 2,189,003 + A4249_RS10880 0.80 +0.4 2,189,004 - A4249_RS10880 0.80 -1.5 2,189,004 - A4249_RS10880 0.80 +0.2 2,189,018 + A4249_RS10880 0.81 +0.4 2,189,018 + A4249_RS10880 0.81 +0.1 2,189,018 + A4249_RS10880 0.81 +0.6 2,189,018 + A4249_RS10880 0.81 +0.0 2,189,018 + A4249_RS10880 0.81 -1.2 2,189,018 + A4249_RS10880 0.81 +1.9 2,189,018 + A4249_RS10880 0.81 +0.5 2,189,018 + A4249_RS10880 0.81 +0.3 2,189,018 + A4249_RS10880 0.81 -0.0 2,189,018 + A4249_RS10880 0.81 -0.1 2,189,018 + A4249_RS10880 0.81 -0.3 2,189,018 + A4249_RS10880 0.81 +0.8 2,189,018 + A4249_RS10880 0.81 -0.4 2,189,019 - A4249_RS10880 0.81 -0.6 2,189,019 - A4249_RS10880 0.81 -0.5 2,189,019 - A4249_RS10880 0.81 +0.8 2,189,019 - A4249_RS10880 0.81 +0.1 2,189,019 - A4249_RS10880 0.81 +0.9 2,189,019 - A4249_RS10880 0.81 -0.9 2,189,019 - A4249_RS10880 0.81 -1.1 2,189,019 - A4249_RS10880 0.81 -0.6 2,189,159 + A4249_RS10880 0.88 +0.4 2,189,160 - A4249_RS10880 0.88 +2.0 2,189,160 - A4249_RS10880 0.88 +0.3 2,189,174 + A4249_RS10880 0.89 +0.5 2,189,174 + A4249_RS10880 0.89 +1.1 2,189,174 + A4249_RS10880 0.89 -1.2 2,189,175 - A4249_RS10880 0.89 -0.3 2,189,175 - A4249_RS10880 0.89 +0.1 2,189,175 - A4249_RS10880 0.89 +1.1 2,189,184 - A4249_RS10880 0.89 +0.2 2,189,184 - A4249_RS10880 0.89 -0.2 2,189,259 - +0.0 2,189,259 - +0.1 2,189,259 - +0.1 2,189,261 + -0.5 2,189,261 + -0.1 2,189,262 - -0.4 2,189,262 - -0.5 2,189,262 - +0.1 2,189,262 - -0.3 2,189,429 + -0.0 2,189,429 + +0.1 2,189,429 + -0.8 2,189,430 - -0.4 2,189,430 - -0.0 2,189,430 - -0.0 2,189,430 - +0.1 2,189,430 - -0.6 2,189,542 + -1.2 2,189,542 + +0.2 2,189,542 + -1.0 2,189,542 + +0.4 2,189,543 - -0.3 2,189,543 - -0.1 2,189,543 - -0.3 2,189,543 - +0.5 2,189,543 - +0.5 2,189,615 + -2.0 2,189,615 + +0.5 2,189,615 + +0.8 2,189,615 + +1.2 2,189,616 - -0.5 2,189,616 - -0.1 2,189,616 - +1.6 2,189,616 - +0.0 2,189,616 - -0.1 2,189,616 - -0.3 2,189,616 - +0.5 2,189,617 + -2.1 2,189,617 + -0.5 2,189,618 - -0.7 2,189,618 - +1.8 2,189,618 - +0.8 2,189,618 - -0.2 2,189,618 - +0.8 2,189,618 - -0.3 2,189,618 - -0.1 2,189,618 - -1.0 2,189,618 - +1.4 2,189,618 - -2.2 2,189,625 + -0.7 2,189,657 + +0.8 2,189,658 - -0.5 2,189,887 - A4249_RS10885 0.18 +1.0 2,190,006 + A4249_RS10885 0.29 +0.2 2,190,006 + A4249_RS10885 0.29 -0.1 2,190,007 - A4249_RS10885 0.29 +1.0 2,190,042 + A4249_RS10885 0.32 -0.1 2,190,042 + A4249_RS10885 0.32 +0.7 2,190,042 + A4249_RS10885 0.32 +0.1 2,190,043 - A4249_RS10885 0.32 -0.2 2,190,043 - A4249_RS10885 0.32 +0.3 2,190,043 - A4249_RS10885 0.32 +0.3 2,190,283 - A4249_RS10885 0.53 +0.1 2,190,283 - A4249_RS10885 0.53 -1.9
Or see this region's nucleotide sequence