Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10880

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10875 and A4249_RS10880 are separated by 70 nucleotidesA4249_RS10880 and A4249_RS10885 are separated by 281 nucleotides A4249_RS10875: A4249_RS10875 - TonB-dependent receptor, at 2,185,320 to 2,187,389 _RS10875 A4249_RS10880: A4249_RS10880 - oligopeptide:H+ symporter, at 2,187,460 to 2,189,394 _RS10880 A4249_RS10885: A4249_RS10885 - hypothetical protein, at 2,189,676 to 2,190,827 _RS10885 Position (kb) 2187 2188 2189 2190Strain fitness (log2 ratio) -2 -1 0 1 2at 2186.794 kb on - strand, within A4249_RS10875at 2187.159 kb on + strand, within A4249_RS10875at 2187.159 kb on + strand, within A4249_RS10875at 2187.159 kb on + strand, within A4249_RS10875at 2187.160 kb on - strand, within A4249_RS10875at 2187.198 kb on + strandat 2187.199 kb on - strandat 2187.199 kb on - strandat 2187.199 kb on - strandat 2187.199 kb on - strandat 2187.219 kb on + strandat 2187.219 kb on + strandat 2187.219 kb on + strandat 2187.219 kb on + strandat 2187.219 kb on + strandat 2187.219 kb on + strandat 2187.219 kb on + strandat 2187.219 kb on + strandat 2187.220 kb on - strandat 2187.220 kb on - strandat 2187.220 kb on - strandat 2187.220 kb on - strandat 2187.220 kb on - strandat 2187.294 kb on + strandat 2187.294 kb on + strandat 2187.295 kb on - strandat 2187.737 kb on + strand, within A4249_RS10880at 2187.737 kb on + strand, within A4249_RS10880at 2187.737 kb on + strand, within A4249_RS10880at 2187.737 kb on + strand, within A4249_RS10880at 2187.737 kb on + strand, within A4249_RS10880at 2187.738 kb on - strand, within A4249_RS10880at 2187.738 kb on - strand, within A4249_RS10880at 2187.738 kb on - strand, within A4249_RS10880at 2187.738 kb on - strand, within A4249_RS10880at 2187.738 kb on - strand, within A4249_RS10880at 2187.866 kb on + strand, within A4249_RS10880at 2187.867 kb on - strand, within A4249_RS10880at 2187.867 kb on - strand, within A4249_RS10880at 2187.867 kb on - strand, within A4249_RS10880at 2187.867 kb on - strand, within A4249_RS10880at 2187.867 kb on - strand, within A4249_RS10880at 2187.867 kb on - strand, within A4249_RS10880at 2188.213 kb on - strand, within A4249_RS10880at 2188.349 kb on + strand, within A4249_RS10880at 2188.350 kb on - strand, within A4249_RS10880at 2188.460 kb on + strand, within A4249_RS10880at 2188.460 kb on + strand, within A4249_RS10880at 2188.460 kb on + strand, within A4249_RS10880at 2188.461 kb on - strand, within A4249_RS10880at 2188.461 kb on - strand, within A4249_RS10880at 2188.461 kb on - strand, within A4249_RS10880at 2188.558 kb on + strand, within A4249_RS10880at 2188.558 kb on + strand, within A4249_RS10880at 2188.558 kb on + strand, within A4249_RS10880at 2188.559 kb on - strand, within A4249_RS10880at 2188.559 kb on - strand, within A4249_RS10880at 2188.559 kb on - strand, within A4249_RS10880at 2188.682 kb on + strand, within A4249_RS10880at 2188.682 kb on + strand, within A4249_RS10880at 2188.682 kb on + strand, within A4249_RS10880at 2188.682 kb on + strand, within A4249_RS10880at 2188.682 kb on + strand, within A4249_RS10880at 2188.683 kb on - strand, within A4249_RS10880at 2188.683 kb on - strand, within A4249_RS10880at 2188.685 kb on + strand, within A4249_RS10880at 2188.685 kb on + strand, within A4249_RS10880at 2188.685 kb on + strand, within A4249_RS10880at 2188.685 kb on + strand, within A4249_RS10880at 2188.686 kb on - strand, within A4249_RS10880at 2188.686 kb on - strand, within A4249_RS10880at 2188.686 kb on - strand, within A4249_RS10880at 2188.686 kb on - strand, within A4249_RS10880at 2188.686 kb on - strand, within A4249_RS10880at 2188.689 kb on - strand, within A4249_RS10880at 2188.689 kb on - strand, within A4249_RS10880at 2188.689 kb on - strand, within A4249_RS10880at 2188.730 kb on + strand, within A4249_RS10880at 2188.730 kb on + strand, within A4249_RS10880at 2188.805 kb on + strand, within A4249_RS10880at 2188.806 kb on - strand, within A4249_RS10880at 2188.806 kb on - strand, within A4249_RS10880at 2188.806 kb on - strand, within A4249_RS10880at 2188.806 kb on - strand, within A4249_RS10880at 2188.806 kb on - strand, within A4249_RS10880at 2188.827 kb on + strand, within A4249_RS10880at 2188.850 kb on + strand, within A4249_RS10880at 2188.850 kb on + strand, within A4249_RS10880at 2188.850 kb on + strand, within A4249_RS10880at 2188.851 kb on - strand, within A4249_RS10880at 2188.851 kb on - strand, within A4249_RS10880at 2188.851 kb on - strand, within A4249_RS10880at 2188.851 kb on - strand, within A4249_RS10880at 2188.851 kb on - strand, within A4249_RS10880at 2188.851 kb on - strand, within A4249_RS10880at 2188.937 kb on + strand, within A4249_RS10880at 2188.937 kb on + strand, within A4249_RS10880at 2188.937 kb on + strand, within A4249_RS10880at 2188.937 kb on + strand, within A4249_RS10880at 2188.937 kb on + strand, within A4249_RS10880at 2188.937 kb on + strand, within A4249_RS10880at 2188.937 kb on + strand, within A4249_RS10880at 2188.938 kb on - strand, within A4249_RS10880at 2189.003 kb on + strand, within A4249_RS10880at 2189.004 kb on - strand, within A4249_RS10880at 2189.004 kb on - strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.018 kb on + strand, within A4249_RS10880at 2189.019 kb on - strand, within A4249_RS10880at 2189.019 kb on - strand, within A4249_RS10880at 2189.019 kb on - strand, within A4249_RS10880at 2189.019 kb on - strand, within A4249_RS10880at 2189.019 kb on - strand, within A4249_RS10880at 2189.019 kb on - strand, within A4249_RS10880at 2189.019 kb on - strand, within A4249_RS10880at 2189.019 kb on - strand, within A4249_RS10880at 2189.159 kb on + strand, within A4249_RS10880at 2189.160 kb on - strand, within A4249_RS10880at 2189.160 kb on - strand, within A4249_RS10880at 2189.174 kb on + strand, within A4249_RS10880at 2189.174 kb on + strand, within A4249_RS10880at 2189.174 kb on + strand, within A4249_RS10880at 2189.175 kb on - strand, within A4249_RS10880at 2189.175 kb on - strand, within A4249_RS10880at 2189.175 kb on - strand, within A4249_RS10880at 2189.184 kb on - strand, within A4249_RS10880at 2189.184 kb on - strand, within A4249_RS10880at 2189.259 kb on - strandat 2189.259 kb on - strandat 2189.259 kb on - strandat 2189.261 kb on + strandat 2189.261 kb on + strandat 2189.262 kb on - strandat 2189.262 kb on - strandat 2189.262 kb on - strandat 2189.262 kb on - strandat 2189.429 kb on + strandat 2189.429 kb on + strandat 2189.429 kb on + strandat 2189.430 kb on - strandat 2189.430 kb on - strandat 2189.430 kb on - strandat 2189.430 kb on - strandat 2189.430 kb on - strandat 2189.542 kb on + strandat 2189.542 kb on + strandat 2189.542 kb on + strandat 2189.542 kb on + strandat 2189.543 kb on - strandat 2189.543 kb on - strandat 2189.543 kb on - strandat 2189.543 kb on - strandat 2189.543 kb on - strandat 2189.615 kb on + strandat 2189.615 kb on + strandat 2189.615 kb on + strandat 2189.615 kb on + strandat 2189.616 kb on - strandat 2189.616 kb on - strandat 2189.616 kb on - strandat 2189.616 kb on - strandat 2189.616 kb on - strandat 2189.616 kb on - strandat 2189.616 kb on - strandat 2189.617 kb on + strandat 2189.617 kb on + strandat 2189.618 kb on - strandat 2189.618 kb on - strandat 2189.618 kb on - strandat 2189.618 kb on - strandat 2189.618 kb on - strandat 2189.618 kb on - strandat 2189.618 kb on - strandat 2189.618 kb on - strandat 2189.618 kb on - strandat 2189.618 kb on - strandat 2189.625 kb on + strandat 2189.657 kb on + strandat 2189.658 kb on - strandat 2189.887 kb on - strand, within A4249_RS10885at 2190.006 kb on + strand, within A4249_RS10885at 2190.006 kb on + strand, within A4249_RS10885at 2190.007 kb on - strand, within A4249_RS10885at 2190.042 kb on + strand, within A4249_RS10885at 2190.042 kb on + strand, within A4249_RS10885at 2190.042 kb on + strand, within A4249_RS10885at 2190.043 kb on - strand, within A4249_RS10885at 2190.043 kb on - strand, within A4249_RS10885at 2190.043 kb on - strand, within A4249_RS10885at 2190.283 kb on - strand, within A4249_RS10885at 2190.283 kb on - strand, within A4249_RS10885

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,186,794 - A4249_RS10875 0.71 -0.5
2,187,159 + A4249_RS10875 0.89 -0.0
2,187,159 + A4249_RS10875 0.89 -0.5
2,187,159 + A4249_RS10875 0.89 -0.9
2,187,160 - A4249_RS10875 0.89 +0.2
2,187,198 + +1.0
2,187,199 - -0.6
2,187,199 - +0.2
2,187,199 - +0.0
2,187,199 - +0.2
2,187,219 + +0.1
2,187,219 + +0.1
2,187,219 + -0.5
2,187,219 + -0.3
2,187,219 + -0.3
2,187,219 + -0.1
2,187,219 + -1.6
2,187,219 + +0.0
2,187,220 - -0.1
2,187,220 - +0.1
2,187,220 - -0.2
2,187,220 - -0.2
2,187,220 - -0.3
2,187,294 + +1.6
2,187,294 + +0.3
2,187,295 - -1.6
2,187,737 + A4249_RS10880 0.14 -0.8
2,187,737 + A4249_RS10880 0.14 +1.0
2,187,737 + A4249_RS10880 0.14 -0.7
2,187,737 + A4249_RS10880 0.14 +0.3
2,187,737 + A4249_RS10880 0.14 +1.1
2,187,738 - A4249_RS10880 0.14 -0.9
2,187,738 - A4249_RS10880 0.14 +0.4
2,187,738 - A4249_RS10880 0.14 -0.7
2,187,738 - A4249_RS10880 0.14 -0.4
2,187,738 - A4249_RS10880 0.14 +0.3
2,187,866 + A4249_RS10880 0.21 +0.0
2,187,867 - A4249_RS10880 0.21 +0.7
2,187,867 - A4249_RS10880 0.21 -0.9
2,187,867 - A4249_RS10880 0.21 +0.0
2,187,867 - A4249_RS10880 0.21 +0.2
2,187,867 - A4249_RS10880 0.21 -1.6
2,187,867 - A4249_RS10880 0.21 +0.7
2,188,213 - A4249_RS10880 0.39 +0.5
2,188,349 + A4249_RS10880 0.46 -0.5
2,188,350 - A4249_RS10880 0.46 -0.8
2,188,460 + A4249_RS10880 0.52 -1.0
2,188,460 + A4249_RS10880 0.52 -0.9
2,188,460 + A4249_RS10880 0.52 -0.7
2,188,461 - A4249_RS10880 0.52 -0.2
2,188,461 - A4249_RS10880 0.52 -0.5
2,188,461 - A4249_RS10880 0.52 +0.1
2,188,558 + A4249_RS10880 0.57 -1.6
2,188,558 + A4249_RS10880 0.57 +0.1
2,188,558 + A4249_RS10880 0.57 +0.0
2,188,559 - A4249_RS10880 0.57 +0.3
2,188,559 - A4249_RS10880 0.57 +0.4
2,188,559 - A4249_RS10880 0.57 +0.1
2,188,682 + A4249_RS10880 0.63 -2.6
2,188,682 + A4249_RS10880 0.63 +0.1
2,188,682 + A4249_RS10880 0.63 -0.5
2,188,682 + A4249_RS10880 0.63 -0.2
2,188,682 + A4249_RS10880 0.63 -0.5
2,188,683 - A4249_RS10880 0.63 -2.6
2,188,683 - A4249_RS10880 0.63 -0.4
2,188,685 + A4249_RS10880 0.63 -0.1
2,188,685 + A4249_RS10880 0.63 -1.9
2,188,685 + A4249_RS10880 0.63 +0.8
2,188,685 + A4249_RS10880 0.63 +0.2
2,188,686 - A4249_RS10880 0.63 +1.1
2,188,686 - A4249_RS10880 0.63 +0.5
2,188,686 - A4249_RS10880 0.63 +0.8
2,188,686 - A4249_RS10880 0.63 -0.7
2,188,686 - A4249_RS10880 0.63 -0.1
2,188,689 - A4249_RS10880 0.64 -0.7
2,188,689 - A4249_RS10880 0.64 +0.7
2,188,689 - A4249_RS10880 0.64 -1.0
2,188,730 + A4249_RS10880 0.66 -1.2
2,188,730 + A4249_RS10880 0.66 -0.9
2,188,805 + A4249_RS10880 0.70 -0.3
2,188,806 - A4249_RS10880 0.70 +0.5
2,188,806 - A4249_RS10880 0.70 -0.0
2,188,806 - A4249_RS10880 0.70 +0.8
2,188,806 - A4249_RS10880 0.70 +1.0
2,188,806 - A4249_RS10880 0.70 -0.5
2,188,827 + A4249_RS10880 0.71 -1.0
2,188,850 + A4249_RS10880 0.72 -0.3
2,188,850 + A4249_RS10880 0.72 +0.0
2,188,850 + A4249_RS10880 0.72 -0.1
2,188,851 - A4249_RS10880 0.72 +1.9
2,188,851 - A4249_RS10880 0.72 -0.5
2,188,851 - A4249_RS10880 0.72 -0.3
2,188,851 - A4249_RS10880 0.72 +0.3
2,188,851 - A4249_RS10880 0.72 +0.5
2,188,851 - A4249_RS10880 0.72 +0.4
2,188,937 + A4249_RS10880 0.76 +1.1
2,188,937 + A4249_RS10880 0.76 +0.4
2,188,937 + A4249_RS10880 0.76 -0.7
2,188,937 + A4249_RS10880 0.76 +0.4
2,188,937 + A4249_RS10880 0.76 +0.7
2,188,937 + A4249_RS10880 0.76 -0.5
2,188,937 + A4249_RS10880 0.76 -0.6
2,188,938 - A4249_RS10880 0.76 -0.6
2,189,003 + A4249_RS10880 0.80 +0.4
2,189,004 - A4249_RS10880 0.80 -1.5
2,189,004 - A4249_RS10880 0.80 +0.2
2,189,018 + A4249_RS10880 0.81 +0.4
2,189,018 + A4249_RS10880 0.81 +0.1
2,189,018 + A4249_RS10880 0.81 +0.6
2,189,018 + A4249_RS10880 0.81 +0.0
2,189,018 + A4249_RS10880 0.81 -1.2
2,189,018 + A4249_RS10880 0.81 +1.9
2,189,018 + A4249_RS10880 0.81 +0.5
2,189,018 + A4249_RS10880 0.81 +0.3
2,189,018 + A4249_RS10880 0.81 -0.0
2,189,018 + A4249_RS10880 0.81 -0.1
2,189,018 + A4249_RS10880 0.81 -0.3
2,189,018 + A4249_RS10880 0.81 +0.8
2,189,018 + A4249_RS10880 0.81 -0.4
2,189,019 - A4249_RS10880 0.81 -0.6
2,189,019 - A4249_RS10880 0.81 -0.5
2,189,019 - A4249_RS10880 0.81 +0.8
2,189,019 - A4249_RS10880 0.81 +0.1
2,189,019 - A4249_RS10880 0.81 +0.9
2,189,019 - A4249_RS10880 0.81 -0.9
2,189,019 - A4249_RS10880 0.81 -1.1
2,189,019 - A4249_RS10880 0.81 -0.6
2,189,159 + A4249_RS10880 0.88 +0.4
2,189,160 - A4249_RS10880 0.88 +2.0
2,189,160 - A4249_RS10880 0.88 +0.3
2,189,174 + A4249_RS10880 0.89 +0.5
2,189,174 + A4249_RS10880 0.89 +1.1
2,189,174 + A4249_RS10880 0.89 -1.2
2,189,175 - A4249_RS10880 0.89 -0.3
2,189,175 - A4249_RS10880 0.89 +0.1
2,189,175 - A4249_RS10880 0.89 +1.1
2,189,184 - A4249_RS10880 0.89 +0.2
2,189,184 - A4249_RS10880 0.89 -0.2
2,189,259 - +0.0
2,189,259 - +0.1
2,189,259 - +0.1
2,189,261 + -0.5
2,189,261 + -0.1
2,189,262 - -0.4
2,189,262 - -0.5
2,189,262 - +0.1
2,189,262 - -0.3
2,189,429 + -0.0
2,189,429 + +0.1
2,189,429 + -0.8
2,189,430 - -0.4
2,189,430 - -0.0
2,189,430 - -0.0
2,189,430 - +0.1
2,189,430 - -0.6
2,189,542 + -1.2
2,189,542 + +0.2
2,189,542 + -1.0
2,189,542 + +0.4
2,189,543 - -0.3
2,189,543 - -0.1
2,189,543 - -0.3
2,189,543 - +0.5
2,189,543 - +0.5
2,189,615 + -2.0
2,189,615 + +0.5
2,189,615 + +0.8
2,189,615 + +1.2
2,189,616 - -0.5
2,189,616 - -0.1
2,189,616 - +1.6
2,189,616 - +0.0
2,189,616 - -0.1
2,189,616 - -0.3
2,189,616 - +0.5
2,189,617 + -2.1
2,189,617 + -0.5
2,189,618 - -0.7
2,189,618 - +1.8
2,189,618 - +0.8
2,189,618 - -0.2
2,189,618 - +0.8
2,189,618 - -0.3
2,189,618 - -0.1
2,189,618 - -1.0
2,189,618 - +1.4
2,189,618 - -2.2
2,189,625 + -0.7
2,189,657 + +0.8
2,189,658 - -0.5
2,189,887 - A4249_RS10885 0.18 +1.0
2,190,006 + A4249_RS10885 0.29 +0.2
2,190,006 + A4249_RS10885 0.29 -0.1
2,190,007 - A4249_RS10885 0.29 +1.0
2,190,042 + A4249_RS10885 0.32 -0.1
2,190,042 + A4249_RS10885 0.32 +0.7
2,190,042 + A4249_RS10885 0.32 +0.1
2,190,043 - A4249_RS10885 0.32 -0.2
2,190,043 - A4249_RS10885 0.32 +0.3
2,190,043 - A4249_RS10885 0.32 +0.3
2,190,283 - A4249_RS10885 0.53 +0.1
2,190,283 - A4249_RS10885 0.53 -1.9

Or see this region's nucleotide sequence