Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10725

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10715 and A4249_RS10720 overlap by 4 nucleotidesA4249_RS10720 and A4249_RS10725 are separated by 48 nucleotidesA4249_RS10725 and A4249_RS10730 overlap by 8 nucleotidesA4249_RS10730 and A4249_RS10735 are separated by 1 nucleotides A4249_RS10715: A4249_RS10715 - imidazole glycerol phosphate synthase subunit HisF, at 2,153,882 to 2,154,649 _RS10715 A4249_RS10720: A4249_RS10720 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 2,154,646 to 2,155,269 _RS10720 A4249_RS10725: A4249_RS10725 - glucose-6-phosphate dehydrogenase, at 2,155,318 to 2,156,778 _RS10725 A4249_RS10730: A4249_RS10730 - 6-phosphogluconolactonase, at 2,156,771 to 2,157,487 _RS10730 A4249_RS10735: A4249_RS10735 - phosphogluconate dehydratase, at 2,157,489 to 2,159,378 _RS10735 Position (kb) 2155 2156 2157Strain fitness (log2 ratio) -2 -1 0 1at 2154.437 kb on + strand, within A4249_RS10715at 2154.438 kb on - strand, within A4249_RS10715at 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.639 kb on + strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.640 kb on - strandat 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.742 kb on + strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.743 kb on - strand, within A4249_RS10720at 2154.744 kb on + strand, within A4249_RS10720at 2154.745 kb on - strand, within A4249_RS10720at 2154.745 kb on - strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.171 kb on + strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.172 kb on - strand, within A4249_RS10720at 2155.201 kb on - strand, within A4249_RS10720at 2155.267 kb on + strandat 2155.274 kb on + strandat 2155.274 kb on + strandat 2155.274 kb on + strandat 2155.274 kb on + strandat 2157.562 kb on - strandat 2157.715 kb on - strand, within A4249_RS10735at 2157.715 kb on - strand, within A4249_RS10735at 2157.715 kb on - strand, within A4249_RS10735at 2157.715 kb on - strand, within A4249_RS10735

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,154,437 + A4249_RS10715 0.72 +0.3
2,154,438 - A4249_RS10715 0.72 +0.8
2,154,639 + +0.1
2,154,639 + +0.9
2,154,639 + +0.4
2,154,639 + -0.5
2,154,639 + +0.3
2,154,639 + -0.3
2,154,639 + -0.4
2,154,639 + +0.3
2,154,639 + +0.3
2,154,639 + -0.1
2,154,640 - +0.3
2,154,640 - -1.6
2,154,640 - -0.1
2,154,640 - +0.7
2,154,640 - -0.1
2,154,640 - -0.7
2,154,640 - -0.2
2,154,640 - -1.1
2,154,742 + A4249_RS10720 0.15 +0.6
2,154,742 + A4249_RS10720 0.15 +0.5
2,154,742 + A4249_RS10720 0.15 +0.4
2,154,742 + A4249_RS10720 0.15 -1.3
2,154,742 + A4249_RS10720 0.15 -0.9
2,154,742 + A4249_RS10720 0.15 -1.4
2,154,742 + A4249_RS10720 0.15 +0.6
2,154,742 + A4249_RS10720 0.15 -0.3
2,154,743 - A4249_RS10720 0.16 -0.4
2,154,743 - A4249_RS10720 0.16 -1.2
2,154,743 - A4249_RS10720 0.16 -0.3
2,154,743 - A4249_RS10720 0.16 -0.4
2,154,743 - A4249_RS10720 0.16 +0.1
2,154,743 - A4249_RS10720 0.16 +0.3
2,154,743 - A4249_RS10720 0.16 -1.4
2,154,743 - A4249_RS10720 0.16 -2.0
2,154,743 - A4249_RS10720 0.16 -2.3
2,154,743 - A4249_RS10720 0.16 -0.0
2,154,743 - A4249_RS10720 0.16 -0.7
2,154,744 + A4249_RS10720 0.16 +0.9
2,154,745 - A4249_RS10720 0.16 +0.3
2,154,745 - A4249_RS10720 0.16 -0.2
2,155,171 + A4249_RS10720 0.84 -0.2
2,155,171 + A4249_RS10720 0.84 -0.9
2,155,171 + A4249_RS10720 0.84 -1.5
2,155,171 + A4249_RS10720 0.84 +0.4
2,155,171 + A4249_RS10720 0.84 +0.8
2,155,172 - A4249_RS10720 0.84 -0.5
2,155,172 - A4249_RS10720 0.84 -0.1
2,155,172 - A4249_RS10720 0.84 -0.1
2,155,172 - A4249_RS10720 0.84 +0.1
2,155,172 - A4249_RS10720 0.84 +0.1
2,155,172 - A4249_RS10720 0.84 -0.2
2,155,172 - A4249_RS10720 0.84 -1.0
2,155,172 - A4249_RS10720 0.84 -0.6
2,155,201 - A4249_RS10720 0.89 +0.2
2,155,267 + +0.4
2,155,274 + +0.6
2,155,274 + -0.2
2,155,274 + -0.3
2,155,274 + -0.7
2,157,562 - +1.1
2,157,715 - A4249_RS10735 0.12 -0.7
2,157,715 - A4249_RS10735 0.12 +0.6
2,157,715 - A4249_RS10735 0.12 -0.4
2,157,715 - A4249_RS10735 0.12 +0.6

Or see this region's nucleotide sequence