Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10525

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10515 and A4249_RS10520 are separated by 61 nucleotidesA4249_RS10520 and A4249_RS10525 are separated by 186 nucleotidesA4249_RS10525 and A4249_RS10530 are separated by 74 nucleotides A4249_RS10515: A4249_RS10515 - tRNA dihydrouridine(20/20a) synthase DusA, at 2,114,599 to 2,115,630 _RS10515 A4249_RS10520: A4249_RS10520 - hypothetical protein, at 2,115,692 to 2,116,360 _RS10520 A4249_RS10525: A4249_RS10525 - 3D domain-containing protein, at 2,116,547 to 2,117,104 _RS10525 A4249_RS10530: A4249_RS10530 - hypothetical protein, at 2,117,179 to 2,118,069 _RS10530 Position (kb) 2116 2117 2118Strain fitness (log2 ratio) -2 -1 0 1 2at 2115.628 kb on + strandat 2115.629 kb on - strandat 2115.659 kb on + strandat 2115.659 kb on + strandat 2115.857 kb on + strand, within A4249_RS10520at 2115.857 kb on + strand, within A4249_RS10520at 2115.858 kb on - strand, within A4249_RS10520at 2115.890 kb on + strand, within A4249_RS10520at 2115.890 kb on + strand, within A4249_RS10520at 2115.890 kb on + strand, within A4249_RS10520at 2115.890 kb on + strand, within A4249_RS10520at 2115.890 kb on + strand, within A4249_RS10520at 2115.890 kb on + strand, within A4249_RS10520at 2115.890 kb on + strand, within A4249_RS10520at 2115.890 kb on + strand, within A4249_RS10520at 2115.890 kb on + strand, within A4249_RS10520at 2115.891 kb on - strand, within A4249_RS10520at 2115.891 kb on - strand, within A4249_RS10520at 2115.891 kb on - strand, within A4249_RS10520at 2115.891 kb on - strand, within A4249_RS10520at 2115.891 kb on - strand, within A4249_RS10520at 2115.891 kb on - strand, within A4249_RS10520at 2115.891 kb on - strand, within A4249_RS10520at 2115.891 kb on - strand, within A4249_RS10520at 2115.906 kb on - strand, within A4249_RS10520at 2115.992 kb on + strand, within A4249_RS10520at 2115.992 kb on + strand, within A4249_RS10520at 2115.992 kb on + strand, within A4249_RS10520at 2115.992 kb on + strand, within A4249_RS10520at 2115.993 kb on - strand, within A4249_RS10520at 2115.993 kb on - strand, within A4249_RS10520at 2115.993 kb on - strand, within A4249_RS10520at 2116.136 kb on + strand, within A4249_RS10520at 2116.137 kb on - strand, within A4249_RS10520at 2116.151 kb on - strand, within A4249_RS10520at 2116.255 kb on + strand, within A4249_RS10520at 2116.255 kb on + strand, within A4249_RS10520at 2116.255 kb on + strand, within A4249_RS10520at 2116.255 kb on + strand, within A4249_RS10520at 2116.256 kb on - strand, within A4249_RS10520at 2116.256 kb on - strand, within A4249_RS10520at 2116.256 kb on - strand, within A4249_RS10520at 2116.256 kb on - strand, within A4249_RS10520at 2116.313 kb on + strandat 2116.313 kb on + strandat 2116.313 kb on + strandat 2116.313 kb on + strandat 2116.313 kb on + strandat 2116.314 kb on - strandat 2116.314 kb on - strandat 2116.314 kb on - strandat 2116.314 kb on - strandat 2116.314 kb on - strandat 2116.314 kb on - strandat 2116.314 kb on - strandat 2116.314 kb on - strandat 2116.400 kb on - strandat 2116.403 kb on + strandat 2116.403 kb on + strandat 2117.089 kb on + strandat 2117.089 kb on + strandat 2117.227 kb on - strandat 2117.228 kb on + strandat 2117.228 kb on + strandat 2117.228 kb on + strandat 2117.228 kb on + strandat 2117.228 kb on + strandat 2117.228 kb on + strandat 2117.229 kb on - strandat 2117.229 kb on - strandat 2117.229 kb on - strandat 2117.229 kb on - strandat 2117.229 kb on - strandat 2117.229 kb on - strandat 2117.229 kb on - strandat 2117.242 kb on + strandat 2117.242 kb on + strandat 2117.242 kb on + strandat 2117.242 kb on + strandat 2117.242 kb on + strandat 2117.242 kb on + strandat 2117.242 kb on + strandat 2117.243 kb on - strandat 2117.243 kb on - strandat 2117.243 kb on - strandat 2117.243 kb on - strandat 2117.243 kb on - strandat 2117.249 kb on + strandat 2117.318 kb on + strand, within A4249_RS10530at 2117.319 kb on - strand, within A4249_RS10530at 2117.319 kb on - strand, within A4249_RS10530at 2117.319 kb on - strand, within A4249_RS10530at 2117.337 kb on + strand, within A4249_RS10530at 2117.337 kb on + strand, within A4249_RS10530at 2117.337 kb on + strand, within A4249_RS10530at 2117.338 kb on - strand, within A4249_RS10530at 2117.338 kb on - strand, within A4249_RS10530at 2117.517 kb on + strand, within A4249_RS10530at 2117.517 kb on + strand, within A4249_RS10530at 2117.518 kb on - strand, within A4249_RS10530at 2117.546 kb on + strand, within A4249_RS10530at 2117.546 kb on + strand, within A4249_RS10530at 2117.546 kb on + strand, within A4249_RS10530at 2117.547 kb on - strand, within A4249_RS10530at 2117.547 kb on - strand, within A4249_RS10530at 2117.547 kb on - strand, within A4249_RS10530at 2117.645 kb on + strand, within A4249_RS10530at 2117.645 kb on + strand, within A4249_RS10530at 2117.645 kb on + strand, within A4249_RS10530at 2117.645 kb on + strand, within A4249_RS10530at 2117.645 kb on + strand, within A4249_RS10530at 2117.645 kb on + strand, within A4249_RS10530at 2117.645 kb on + strand, within A4249_RS10530at 2117.646 kb on - strand, within A4249_RS10530at 2117.646 kb on - strand, within A4249_RS10530at 2117.646 kb on - strand, within A4249_RS10530at 2117.646 kb on - strand, within A4249_RS10530at 2117.646 kb on - strand, within A4249_RS10530at 2117.646 kb on - strand, within A4249_RS10530at 2117.646 kb on - strand, within A4249_RS10530at 2117.646 kb on - strand, within A4249_RS10530at 2117.646 kb on - strand, within A4249_RS10530at 2117.666 kb on + strand, within A4249_RS10530at 2117.735 kb on + strand, within A4249_RS10530at 2117.735 kb on + strand, within A4249_RS10530at 2117.963 kb on + strand, within A4249_RS10530at 2117.963 kb on + strand, within A4249_RS10530at 2117.963 kb on + strand, within A4249_RS10530at 2117.963 kb on + strand, within A4249_RS10530at 2117.963 kb on + strand, within A4249_RS10530at 2117.963 kb on + strand, within A4249_RS10530at 2117.964 kb on - strand, within A4249_RS10530at 2117.964 kb on - strand, within A4249_RS10530at 2117.964 kb on - strand, within A4249_RS10530at 2117.964 kb on - strand, within A4249_RS10530at 2117.964 kb on - strand, within A4249_RS10530at 2117.964 kb on - strand, within A4249_RS10530at 2117.964 kb on - strand, within A4249_RS10530

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,115,628 + +0.3
2,115,629 - -0.1
2,115,659 + +0.2
2,115,659 + -0.2
2,115,857 + A4249_RS10520 0.25 +0.6
2,115,857 + A4249_RS10520 0.25 -0.3
2,115,858 - A4249_RS10520 0.25 -0.2
2,115,890 + A4249_RS10520 0.30 -1.0
2,115,890 + A4249_RS10520 0.30 +0.7
2,115,890 + A4249_RS10520 0.30 -0.2
2,115,890 + A4249_RS10520 0.30 +0.1
2,115,890 + A4249_RS10520 0.30 -0.7
2,115,890 + A4249_RS10520 0.30 -1.0
2,115,890 + A4249_RS10520 0.30 -0.2
2,115,890 + A4249_RS10520 0.30 -0.1
2,115,890 + A4249_RS10520 0.30 +0.6
2,115,891 - A4249_RS10520 0.30 +0.1
2,115,891 - A4249_RS10520 0.30 +0.3
2,115,891 - A4249_RS10520 0.30 +0.3
2,115,891 - A4249_RS10520 0.30 -0.5
2,115,891 - A4249_RS10520 0.30 +2.6
2,115,891 - A4249_RS10520 0.30 +0.1
2,115,891 - A4249_RS10520 0.30 -2.4
2,115,891 - A4249_RS10520 0.30 -2.3
2,115,906 - A4249_RS10520 0.32 +0.5
2,115,992 + A4249_RS10520 0.45 +0.4
2,115,992 + A4249_RS10520 0.45 -0.2
2,115,992 + A4249_RS10520 0.45 +0.4
2,115,992 + A4249_RS10520 0.45 +1.3
2,115,993 - A4249_RS10520 0.45 +0.5
2,115,993 - A4249_RS10520 0.45 -0.1
2,115,993 - A4249_RS10520 0.45 +0.1
2,116,136 + A4249_RS10520 0.66 -0.1
2,116,137 - A4249_RS10520 0.67 +0.4
2,116,151 - A4249_RS10520 0.69 -0.4
2,116,255 + A4249_RS10520 0.84 -0.9
2,116,255 + A4249_RS10520 0.84 -1.6
2,116,255 + A4249_RS10520 0.84 +0.5
2,116,255 + A4249_RS10520 0.84 +2.1
2,116,256 - A4249_RS10520 0.84 -0.0
2,116,256 - A4249_RS10520 0.84 +0.3
2,116,256 - A4249_RS10520 0.84 +0.5
2,116,256 - A4249_RS10520 0.84 +0.0
2,116,313 + -0.3
2,116,313 + -2.4
2,116,313 + +0.2
2,116,313 + +1.5
2,116,313 + +0.2
2,116,314 - -1.9
2,116,314 - -0.5
2,116,314 - +0.3
2,116,314 - -0.8
2,116,314 - -0.3
2,116,314 - -1.2
2,116,314 - +0.6
2,116,314 - -1.6
2,116,400 - +1.8
2,116,403 + +0.3
2,116,403 + +0.6
2,117,089 + +0.5
2,117,089 + +0.6
2,117,227 - +0.2
2,117,228 + +0.4
2,117,228 + -1.1
2,117,228 + -0.4
2,117,228 + -0.6
2,117,228 + -0.2
2,117,228 + -0.1
2,117,229 - +0.6
2,117,229 - -0.3
2,117,229 - -0.3
2,117,229 - +0.6
2,117,229 - +0.3
2,117,229 - +0.1
2,117,229 - +0.2
2,117,242 + +0.1
2,117,242 + -0.0
2,117,242 + -1.2
2,117,242 + -0.1
2,117,242 + -1.5
2,117,242 + -0.3
2,117,242 + +0.3
2,117,243 - +0.4
2,117,243 - -0.4
2,117,243 - +0.1
2,117,243 - -0.2
2,117,243 - -0.9
2,117,249 + -0.2
2,117,318 + A4249_RS10530 0.16 -0.2
2,117,319 - A4249_RS10530 0.16 -0.1
2,117,319 - A4249_RS10530 0.16 +0.4
2,117,319 - A4249_RS10530 0.16 +0.4
2,117,337 + A4249_RS10530 0.18 -0.2
2,117,337 + A4249_RS10530 0.18 +0.9
2,117,337 + A4249_RS10530 0.18 -0.1
2,117,338 - A4249_RS10530 0.18 -0.6
2,117,338 - A4249_RS10530 0.18 -0.9
2,117,517 + A4249_RS10530 0.38 +0.5
2,117,517 + A4249_RS10530 0.38 +0.4
2,117,518 - A4249_RS10530 0.38 -0.5
2,117,546 + A4249_RS10530 0.41 +1.1
2,117,546 + A4249_RS10530 0.41 -0.4
2,117,546 + A4249_RS10530 0.41 -0.1
2,117,547 - A4249_RS10530 0.41 -1.3
2,117,547 - A4249_RS10530 0.41 -0.9
2,117,547 - A4249_RS10530 0.41 -0.1
2,117,645 + A4249_RS10530 0.52 -0.1
2,117,645 + A4249_RS10530 0.52 +0.1
2,117,645 + A4249_RS10530 0.52 -1.0
2,117,645 + A4249_RS10530 0.52 -1.3
2,117,645 + A4249_RS10530 0.52 +1.1
2,117,645 + A4249_RS10530 0.52 -0.5
2,117,645 + A4249_RS10530 0.52 -0.9
2,117,646 - A4249_RS10530 0.52 -0.3
2,117,646 - A4249_RS10530 0.52 +0.1
2,117,646 - A4249_RS10530 0.52 -1.2
2,117,646 - A4249_RS10530 0.52 -0.7
2,117,646 - A4249_RS10530 0.52 -0.9
2,117,646 - A4249_RS10530 0.52 +0.2
2,117,646 - A4249_RS10530 0.52 +0.4
2,117,646 - A4249_RS10530 0.52 +0.1
2,117,646 - A4249_RS10530 0.52 +0.1
2,117,666 + A4249_RS10530 0.55 +0.1
2,117,735 + A4249_RS10530 0.62 -0.2
2,117,735 + A4249_RS10530 0.62 +0.7
2,117,963 + A4249_RS10530 0.88 +0.1
2,117,963 + A4249_RS10530 0.88 +0.7
2,117,963 + A4249_RS10530 0.88 +0.7
2,117,963 + A4249_RS10530 0.88 +0.1
2,117,963 + A4249_RS10530 0.88 +1.1
2,117,963 + A4249_RS10530 0.88 +0.2
2,117,964 - A4249_RS10530 0.88 -0.4
2,117,964 - A4249_RS10530 0.88 -0.3
2,117,964 - A4249_RS10530 0.88 -0.6
2,117,964 - A4249_RS10530 0.88 -0.7
2,117,964 - A4249_RS10530 0.88 -0.0
2,117,964 - A4249_RS10530 0.88 -0.4
2,117,964 - A4249_RS10530 0.88 -0.7

Or see this region's nucleotide sequence